Heavy metal and trace element concentrations in the blood of scalloped hammerhead sharks (Sphyrna lewini) from La Paz Bay, México

Sharks are particularly susceptible to bioaccumulation due to their life history characteristics and trophic position within marine ecosystems. Despite this, studies of bioaccumulation cover only a small proportion of extant species. In this study we report concentrations of trace elements and heavy metals in blood samples of Sphyrna lewini for the first time. We report high concentrations of several trace elements and heavy metals, with concentrations of some elements exceeding the limit determined safe for human consumption. High elemental concentrations may reflect biochemical differences between blood plasma and other tissues; however, they may also be symptomatic of high levels of exposure triggered by anthropogenic activities. We also provide evidence of elemental accumulation through ontogeny, the nature of which differs from that previously reported. Ultimately, this baseline study increases our understanding of interspecific and intraspecific variation in bioaccumulation and ecotoxicology in elasmobranchs which may prove important in ensuring adequate management.

Selection of climate variables in ant species distribution models: case study in South Korea

The selection of explanatory variables is important in modeling prediction of changes in species distribution in response to climate change. In this study, we evaluated the importance of variable selection in species distribution models. We compared two different types of models for predicting the distribution of ant species: temperature-only and both temperature and precipitation. Ants were collected at 343 forest sites across South Korea from 2006 through 2009. We used a generalized additive model (GAM) to predict the future distribution of 16 species that showed significant responses to changes in climatic factors (temperature and/or precipitation). Four types of GAMs were constructed: temperature, temperature with interaction of precipitation, temperature and precipitation without interaction, and temperature and precipitation with interaction. Most species displayed similar results between the temperatureonly and the temperature and precipitation models. The results for predicted changes in species richness were different from the temperature-only model. This indicates higher uncertainty in the prediction of species richness, which is obtained by combining the prediction results of distribution change for each species, than in the prediction of distribution change. The turnover rate of the ant assemblages was predicted to increase with decreases in temperature and increases in elevation, which was consistent with other studies. Finally, our results showed that the prediction of the distribution or diversity of organisms responding to climate change is uncertain because of the high variability of the model outputs induced by the variables used in the models.

Determination of single-molecule transport activity of OATP2B1 by measuring the number of transporter molecules using electrophysiological approach

Transporter-mediated clearance is determined by two factors, its single-molecule clearance, and expression level. However, no reliable method has been developed to evaluate them separately. This study aimed to develop a reliable method for evaluating the single-molecule activity of membrane transporters, such as organic anion transporting polypeptide (OATP) 2B1. HEK293 cells that co-expressed large conductance calcium-activated potassium (BK) channel and OATP2B1 were established and used for the following experiments. i) BK channel-mediated whole-cell conductance was measured using patch-clamp technique and divided by its unitary conductance to estimate the number of channels on plasma membrane (QI). ii) Using plasma membrane fraction, quantitative targeted absolute proteomics determined the stoichiometric ratio (ρ) of OATP2B1 to BK channel. iii) The uptake of estrone 3-sulfate was evaluated to calculate the Michaelis constant and uptake clearance (CL) per cell. Single-molecule clearance (CLint) was calculated by dividing CL by QI·ρ. QI and ρ values were estimated to be 916 and 2.16, respectively, yielding CLint of 5.23 fL/min/molecule. We successfully developed a novel method to reliably measure the single-molecule activity of a transporter, which could be used to evaluate the influences of factors such as genetic variations and post-translational modifications on the intrinsic activity of transporters.

Metabolic deuterium oxide (D2O) labeling in quantitative omics studies: A tutorial review

Mass spectrometry (MS) is an invaluable tool for sensitive detection and characterization of individual biomolecules in omics studies. MS combined with stable isotope labeling enables the accurate and precise determination of quantitative changes occurring in biological samples. Metabolic isotope labeling, wherein isotopes are introduced into biomolecules through biosynthetic metabolism, is one of the main labeling strategies. Among the precursors employed in metabolic isotope labeling, deuterium oxide (D₂O) is cost-effective and easy to implement in any biological systems. This tutorial review aims to explain the basic principle of D₂O labeling and its applications in omics research. D₂O labeling incorporates D into stable C-H bonds in various biomolecules, including nucleotides, proteins, lipids, and carbohydrates. Typically, D₂O labeling is performed at low enrichment of 1%-10% D₂O, which causes subtle changes in the isotopic distribution of a biomolecule, instead of the complete separation between labeled and unlabeled samples in a mass spectrum. D₂O labeling has been employed in various omics studies to determine the metabolic flux, turnover rate, and relative quantification. Moreover, the advantages and challenges of D₂O labeling and its future prospects in quantitative omics are discussed. The economy, versatility, and convenience of D₂O labeling will be beneficial for the long-term omics studies for higher organisms.

Litterfall biomass and nutrient cycling in karst and nearby non-karst forests in tropical China: A 10-year comparison

Litterfall helps maintaining primary production and nutrient cycling in forest ecosystems. However, few studies have investigated long-term characteristics of litterfall in tropical karst and non-karst forests co-occurring in the same region. A 10-year comparative study was conducted to estimate the biomass, litter accumulation, turnover rate, nutrient return and nutrient use efficiency associated with litterfall in a karst forest (KF) and a nearby non-karst forest (NKF) in northern tropical China. Significant spatial-temporal variation was observed in monthly and annual litterfall biomass in the two forests. Annual mean litterfall biomass in KF (9.75 Mg ha^-1 year^-1) was obviously lower than that in NKF (10.49 Mg ha^-1 year^-1). The litterfall biomass in NKF was significantly correlated with maximum air temperature, wind speed and total solar radiation, whereas that in KF was significantly correlated with relative humidity, wind speed and low temperature. Average stand litter in KF (2.92 Mg ha^-1 year^-1) was significantly higher than that in NKF (2.38 Mg ha^-1 year^-1). Stand litter mostly occurred during the cool and dry season, which coincided with litterfall input and exhibited bimodal pattern. Turnover rate was 1.3 time higher in NKF than in KF, suggesting that litter decomposed slowly in karst habitats. Distinct temporal dynamic and significant differences were observed in chemical composition of litterfall between KF and NKF. Total amounts of C, P, K and total nutrients returned to the topsoil in KF were significantly lower than those in NKF. The KF exhibited relatively high P and K use efficiency because of their low availability in karst soils. Compared with the non-karst habitat, the tropical karst habitats are more likely to develop a plant community with certain nutrient concentrations of litterfall and with a nutrient cycling mechanism that is well-adapted to harsh and heterogeneous condition.

Mineral density differences between femoral cortical bone and trabecular bone are not explained by turnover rate alone

Bone mineral density distributions (BMDDs) are a measurable property of bone tissues that depends strongly on bone remodelling and mineralisation processes. These processes can vary significantly in health and disease and across skeletal sites, so there is high interest in analysing these processes from experimental BMDDs. Here, we propose a rigorous hypothesis-testing approach based on a mathematical model of mineral heterogeneity in bone due to remodelling and mineralisation, to help explain differences observed between the BMDD of human femoral cortical bone and the BMDD of human trabecular bone. Recent BMDD measurements show that femoral cortical bone possesses a higher bone mineral density, but a similar mineral heterogeneity around the mean compared to trabecular bone. By combining this data with the mathematical model, we are able to test whether this difference in BMDD can be explained by (i) differences in turnover rate; (ii) differences in osteoclast resorption behaviour; and (iii) differences in mineralisation kinetics between the two bone types. We find that accounting only for differences in turnover rate is inconsistent with the fact that both BMDDs have a similar spread around the mean, and that accounting for differences in osteoclast resorption behaviour leads to biologically inconsistent bone remodelling patterns. We conclude that the kinetics of mineral accumulation in bone matrix must therefore be different in femoral cortical bone and trabecular bone. Although both cortical and trabecular bone are made up of lamellar bone, the different mineralisation kinetics in the two types of bone point towards more profound structural differences than usually assumed.

Allocation and stoichiometric regulation of phosphorus in a freshwater zooplankton under limited conditions: Implication for nutrient cycling

Because zooplankton is potentially limited by phosphorus (P) in freshwater, they may modify their body P distributions in different biochemical and anatomic components depending on the environmental P levels. In the present study, we quantified the distribution and regulation of P in a freshwater zooplankton Daphnia magna under P-limited conditions by using ³³P as a radiotracer. We demonstrated that the P allocation patterns in D. magna were independent of the ontogenic development. Carapace accounted for 35-54% of total body P, followed by small molecules and nucleic acids (11-30%), whereas phospholipids represented only a minor P pool. The proportion of body P allocated into carapace decreased from 51.8% in +P adults to 16.5% in the -P adults, and a lower proportion of body P was also allocated to eggs in the -P adults than in the +P adults (3.8 vs. 16.5%). Meanwhile, no difference in allocation pattern was detected in the juveniles under +P and -P conditions, demonstrating an interaction between effects of P condition and ontogeny. Furthermore, the P turnover rates of nucleic acids and phospholipids in the -P juveniles were only half of those found in the +P individuals, suggesting a reduced metabolic rate under P-deficient conditions. However, the P turnover rate of small molecules, nucleic acids and phospholipids did not vary with the P condition in adults. It appeared that the adults could maintain their basic P metabolism by down-regulating the P allocation to carapace and eggs. Our results provide an insight into the tolerance of zooplankton to P-deficiency and bear implications on involvement of Daphnia in regulation of P cycling and availability in the epilimnion.

LDPE microplastics significantly alter the temporal turnover of soil microbial communities

Although the ubiquitous presence of microplastics in various environments is increasingly well studied, knowledge of the effects of microplastics on ambient microbial communities is still insufficient. To estimate the response of soil bacterial community succession and temporal turnover to microplastic amendment, a soil microcosm experiment was carried out with polyethylene microplastics. The soil samples under control and microplastic amendment conditions were collected for sequencing analysis using Illumina MiSeq technology. Microplastic amendment was found to significantly alter soil bacterial community structure, and the community differences were increased linearly with the incubation time. Compared with the turnover rate of bacterial community in the control samples (0.0103, p < .05, based on Bray-Curtis similarity), the succession rate was significantly (p < .001) higher in the soil with microplastic amendment (0.0309, p < .001). In addition, the effects of microplastic amendment on the time-decay relationships (TDRs) on taxonomic divisions revealed considerable variations of TDRs values, indicating the effects were lineage dependent. Our results propose that the presence of microbial in soil ecosystem may lead to a faster succession rate of soil bacterial community, which provides new insights into the evolutionary consequences of microplastics in terrestrial environment.

Patterns of plant communities along vertical gradient in Dhauladhar Mountains in Lesser Himalayas in North-Western India

Mountains are definitely the most rugged, yet frail resources and biodiversity-rich regions of the world. Environmental variables directly affect species composition, growth patterns, and the ecosystem resulting in a drastic change in the vegetation composition along ascending elevations. The present study investigated vegetation composition, nestedness, and turnover in plant communities along a vertical gradient (2000 to 4000 m) in Dhauladhar Mountains, Lesser Himalayas, India. We determined how α-diversity pattern and nestedness-related processes or turnover (β-diversity) causes dissimilarity in plant communities' composition along the vertical gradient. Overall, 21 permanent plots (20 × 20 m²) at every 100 m interval from 2000 to 4000 m were established. A sampling of shrubs and herbaceous species was done by marking sub-plots of 5 × 5 m² and 1 × 1 m², respectively, within permanent plots. We observed an inverted hump-shaped pattern for evenness index (E), a unimodal hump-shaped pattern for Shannon index (H'), Margalef's richness index, and β-Whittaker (β_w) diversity, and mild-hump-shaped pattern for Simpson index (λ) across the elevational gradient. Turnover (β_sim) and the nestedness-resultant component of β-diversity (β_sne) significantly differed across the elevational gradient. The observed β-diversity patterns revealed that the species replacement rate was less in the mid-altitude communities as compared to lower and higher altitude communities. It was largely attributed to the ecotonic nature of mid-altitudes, which benefited mid-elevational communities rather than low or high altitude communities. Besides lower altitudes, the increased human interference has led to disturbance and subsequent homogenization of flora across the mid-altitudes. With respect to this, the present study signifies the need for preserving the mid-altitudinal communities, without undermining the importance of conserving the low and high altitude communities.

Job satisfaction, work commitment and intention to leave among pharmacists: a cross-sectional study

OBJECTIVES

We assessed job satisfaction, work commitment and intention to leave among pharmacists working in different healthcare settings in Saudi Arabia.

DESIGN

This was a cross-sectional study utilising a previously validated questionnaire.

SETTING

We surveyed the workforce at different healthcare settings in Riyadh, Saudi Arabia.

PARTICIPANTS

The participants were pharmacists licensed by the Saudi Commission for Health Specialties.

OUTCOME MEASURES

We examined job satisfaction, work commitment and intention to leave.

RESULTS

In total, 325 out of 515 pharmacists completed the questionnaire, yielding a response rate of 63%. Over half of them were women (57.8%), 78.2% were Saudi Arabian nationals and 61.8% were married. The majority (88.1%) worked between 36 and 44 hours per week; 96.6% were full-time employees, and 63.4% were government employees working in public hospitals or primary healthcare centres. Although most of the pharmacists were satisfied (satisfied and slightly satisfied) with their current job (39.1% and 24.6%, respectively), about two-thirds (61.9%) had the intention to leave. Multiple logistic regression analysis showed that the most important predictors of pharmacists' intentions to leave were related to job satisfaction and work commitment (OR=0.923; 95% CI 0.899 to 0.947; p<0.001 and OR=1.044; 95% CI 1.014 to 1.08; p=0.004, respectively), whereas respondents' demographic characteristics had no effect.

CONCLUSIONS

Although the pharmacists surveyed were satisfied and committed to their current job, they had the intention to leave. Further research is recommended to clarify why pharmacists in Saudi Arabia have the intention to leave their pharmacy practice job.

Consistent patterns of debris on South African beaches indicate that industrial pellets and other mesoplastic items mostly derive from local sources

Identifying the sources of small plastic fragments is challenging because the original source item seldom can be identified. South Africa provides a useful model system to understand the factors influencing the distribution of beach litter because it has an open coastline with four equally-spaced urban-industrial centres distant from other major source areas. We sampled mesodebris (∼2-25 mm) at 82 South African beaches in 1994, 2005 and 2015. Plastic items comprised 99% by number and 95% by mass of litter items. Industrial pellets were the most abundant plastic items, but fragments of rigid plastic items comprised most of the mass of debris. Strong correlations between industrial pellets and other plastic items indicate that common factors influence the distribution of both pellets and secondary mesoplastics. The abundance of mesodebris at beaches also was correlated in successive surveys, suggesting that beach-specific factors (e.g. aspect, slope, local currents, etc.) influence the amounts of debris on each beach. Sample year had no effect on mesodebris abundance, indicating that there has been little change in the amounts of mesodebris over the last two decades. There were consistently higher densities of both industrial pellets and other plastic items at beaches close to urban-industrial centres; there were only weak correlations with human population density and no correlation with local runoff. The size of industrial pellets decreased away from local urban centres, further supporting the conclusion that, like macroplastic litter, most mesoplastic pollution on continental beaches derives from local, land-based sources. This finding means that local actions to reduce plastics entering the sea will have local benefits, and that it may be possible to assess the efficacy of mitigation measures to reduce marine inputs of mesoplastic items.

Maternal dietary of n-3 polyunsaturated fatty acids affects the neurogenesis and neurochemical in female rat at weaning

Long-chain polyunsaturated fatty acids (LC-PUFAs) are rapidly accumulated in brain during pre- and neonatal life, which is important for the development and function of central nervous system. Deficiency of biologically important n-3 PUFA docosahexaenoic acid (C22:6n-3, DHA) is associated with impaired visual, attention and cognition, and would precipitate psychiatric symptoms. However, clinical studies of the potential mechanism on the effect of dietary DHA deficiency on neural development remain unclear. In addition, the effects of n-6 PUFAs and n-3 PUFAs ingestion on the dynamic process of the cell proliferation in neurogenesis of offspring were investigated using immunefluorescence. And GC-MS was used to determine the fatty acid content in the liver of offspring. To further investigate the neurochemical influence on maternal PUFAs levels, we assessed the functioning of various neurotransmitter systems including glutamatergic, dopaminergic, norepinephrinergic and serotoninergic systems in the brain of female rats at weaning by HPLC-MS/MS. Lastly, we analyzed the turnover rates and between-metabolite ratios (the ratios between metabolites of monoamine neurotransmitters) to seek potential links between the neurotransmitters and dietary fatty acids compositions. There were significant differences between the deficiency group and the control or supplementary group in liver fatty acids compositions, showing that n-3 PUFAs were largely replaced by n-6 PUFAs. The generation of n-3 PUFAs deficiency rats exhibited abnormal neurogenesis and neurochemical. Altered dopamine or norepinephrine transmission and between-metabolite ratios in brain areas may be a key neuronal mechanism that contributes to the potential detrimental effects of n-3 PUFAs deficiency for mental health.

Plant traits and environment: floating leaf blade production and turnover of waterlilies

Floating leaf blades of waterlilies fulfill several functions in wetland ecosystems by production, decomposition and turnover as well as exchange processes. Production and turnover rates of floating leaf blades of three waterlily species, Nuphar lutea (L.) Sm., Nymphaea alba L. and Nymphaea candida Presl, were studied in three freshwater bodies, differing in trophic status, pH and alkalinity. Length and percentages of leaf loss of marked leaf blades were measured weekly during the growing season. Area and biomass were calculated based on leaf length and were used to calculate the turnover rate of floating leaf blades. Seasonal changes in floating leaf production showed that values decreased in the order: Nymphaea alba, Nuphar lutea, Nymphaea candida. The highest production was reached for Nuphar lutea and Nymphaea alba in alkaline, eutrophic water bodies. The production per leaf was relatively high for both species in the acid water body. Nymphaea candida showed a very short vegetation period and low turnover rates. The ratio Total potential leaf biomass/Maximum potential leaf biomass (P/B_max) of the three species ranged from 1.35–2.25. The ratio Vegetation period (Period with floating leaves)/Mean leaf life span ranged from 2.94–4.63, the ratio Growth period (Period with appearance of new floating leaves)/Vegetation period from 0.53–0.73. The clear differences between Nymphaea candida versus Nuphar lutea and Nymphaea alba, may be due to adaptations of Nymphaea candida to an Euro-Siberic climate with short-lasting summer conditions.

More than a century of Grain for Green Program is expected to restore soil carbon stock on alpine grassland revealed by field (13)C pulse labeling

Anthropogenic changes in land use/cover have altered the vegetation, soil, and carbon (C) cycling on the Qinghai-Tibetan Plateau (QTP) over the last ~50years. As a result, the Grain for Green Program (GfGP) has been widely implemented over the last 10years to mitigate the impacts of cultivation. To quantify the effects of the GfGP on C partitioning and turnover rates at the ecosystem scale, an in situ (13)C pulse labeling experiment was conducted on natural and GfGP grasslands in an agro-pastoral ecotone in the Lake Qinghai region on the QTP. We found that there were significant differences in the C stocks of all the considered pools in both the natural and GfGP grasslands, with higher CO2 uptake rates in the GfGP grassland than that in the natural grassland. Partitioning of photoassimilate (% of recovered (13)C) in C pools of both grasslands was similar 25days after labeling, except in the roots of the 0-15 and 5-15cm soil layer. Soil organic C (SOC) sequestration rate in the GfGP grassland was 11.59±1.89gCm(-2)yr(-1) significantly greater than that in the natural grassland. The results confirmed that the GfGP is an efficient approach for grassland restoration and C sequestration. However, it will take more than a century (119.19±20.26yr) to restore the SOC stock from the current cropland baseline level to the approximate level of natural grassland. We suggest that additional measures are needed in the selection of suitable plant species for vegetation restoration, and in reasonable grazing management.

Turnover rates in microorganisms by laser ablation electrospray ionization mass spectrometry and pulse-chase analysis

Biochemical processes rely on elaborate networks containing thousands of compounds participating in thousands of reaction. Rapid turnover of diverse metabolites and lipids in an organism is an essential part of homeostasis. It affects energy production and storage, two important processes utilized in bioengineering. Conventional approaches to simultaneously quantify a large number of turnover rates in biological systems are currently not feasible. Here we show that pulse-chase analysis followed by laser ablation electrospray ionization mass spectrometry (LAESI-MS) enable the simultaneous and rapid determination of metabolic turnover rates. The incorporation of ion mobility separation (IMS) allowed an additional dimension of analysis, i.e., the detection and identification of isotopologs based on their collision cross sections. We demonstrated these capabilities by determining metabolite, lipid, and peptide turnover in the photosynthetic green algae, Chlamydomonas reinhardtii, in the presence of (15)N-labeled ammonium chloride as the main nitrogen source. Following the reversal of isotope patterns in the chase phase by LAESI-IMS-MS revealed the turnover rates and half-lives for biochemical species with a wide range of natural concentrations, e.g., chlorophyll metabolites, lipids, and peptides. For example, the half-lives of lyso-DGTS(16:0) and DGTS(18:3/16:0), t1/2 = 43.6 ± 4.5 h and 47.6 ± 2.2 h, respectively, provided insight into lipid synthesis and degradation in this organism. Within the same experiment, half-lives for chlorophyll a, t1/2 = 24.1 ± 2.2 h, and a 2.8 kDa peptide, t1/2 = 10.4 ± 3.6 h, were also determined.

Inhibition of transketolase by oxythiamine altered dynamics of protein signals in pancreatic cancer cells

Oxythiamine (OT), an analogue of anti-metabolite, can suppress the nonoxidative synthesis of ribose and induce cell apoptosis by causing a G1 phase arrest in vitro and in vivo. However, the molecular mechanism remains unclear yet. In the present study, a quantitative proteomic analysis using the modified SILAC method (mSILAC) was performed to determine the effect of metabolic inhibition on dynamic changes of protein expression in MIA PaCa-2 cancer cells treated with OT at various doses (0 μM, 5 μM, 50 μM and 500 μM) and time points (0 h, 12 h and 48 h). A total of 52 differential proteins in MIA PaCa-2 cells treated with OT were identified, including 14 phosphorylated proteins. Based on the dynamic expression pattern, these proteins were categorized in three clusters, straight down-regulation (cluster 1, 37% of total proteins), upright "V" shape expression pattern (cluster 2, 47.8% total), and downright "V" shape pattern (cluster 3, 15.2% total). Among them, Annexin A1 expression was significantly down-regulated by OT treatment in time-dependent manner, while no change of this protein was observed in OT dose-dependent fashion. Pathway analysis suggested that inhibition of transketolase resulted in changes of multiple cellular signaling pathways associated with cell apoptosis. The temporal expression patterns of proteins revealed that OT altered dynamics of protein expression in time-dependent fashion by suppressing phosphor kinase expression, resulting in cancer cell apoptosis. Results from this study suggest that interference of single metabolic enzyme activity altered multiple cellular signaling pathways.

Rapid turnover of traps in Utricularia vulgaris L

Utricularia vulgaris growing at Wicken Fen, England, showed rapid turnover of the trapping apparatus. New groups of leaves, each bearing many traps, were produced at a rate of 1.4-2.8 groups per day from April to September, 1987. Old leaves decayed at a comparable rate, so that individual leaves survived for less than 50 days. In July, trapping efficiency of individual bladders was greatest between 1 and 6 days of age and then declined rapidly. Very few traps more than 19 days old could capture prey and most were lost from the leaves within 32 days. The lifespan of traps was closely related to their size and position on the leaves. Because of the rapidity of changes in trap condition with age, trap age is a vital consideration in any studies of the functional ecology of U. vulgaris.