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Zhou L, Zhou L, Wu H, Jing T, Li T, Li J, Kong L, Zhu F. Application of Chlorophyll Fluorescence Analysis Technique in Studying the Response of Lettuce ( Lactuca sativa L.) to Cadmium Stress. Sensors (Basel) 2024; 24:1501. [PMID: 38475037 DOI: 10.3390/s24051501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Revised: 02/16/2024] [Accepted: 02/24/2024] [Indexed: 03/14/2024]
Abstract
To reveal the impact of cadmium stress on the physiological mechanism of lettuce, simultaneous determination and correlation analyses of chlorophyll content and photosynthetic function were conducted using lettuce seedlings as the research subject. The changes in relative chlorophyll content, rapid chlorophyll fluorescence induction kinetics curve, and related chlorophyll fluorescence parameters of lettuce seedling leaves under cadmium stress were detected and analyzed. Furthermore, a model for estimating relative chlorophyll content was established. The results showed that cadmium stress at 1 mg/kg and 5 mg/kg had a promoting effect on the relative chlorophyll content, while cadmium stress at 10 mg/kg and 20 mg/kg had an inhibitory effect on the relative chlorophyll content. Moreover, with the extension of time, the inhibitory effect became more pronounced. Cadmium stress affects both the donor and acceptor sides of photosystem II in lettuce seedling leaves, damaging the electron transfer chain and reducing energy transfer in the photosynthetic system. It also inhibits water photolysis and decreases electron transfer efficiency, leading to a decline in photosynthesis. However, lettuce seedling leaves can mitigate photosystem II damage caused by cadmium stress through increased thermal dissipation. The model established based on the energy captured by a reaction center for electron transfer can effectively estimate the relative chlorophyll content of leaves. This study demonstrates that chlorophyll fluorescence techniques have great potential in elucidating the physiological mechanism of cadmium stress in lettuce, as well as in achieving synchronized determination and correlation analyses of chlorophyll content and photosynthetic function.
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Affiliation(s)
- Lina Zhou
- College of Engineering and Technology, Jilin Agricultural University, Changchun 130118, China
| | - Leijinyu Zhou
- College of Engineering and Technology, Jilin Agricultural University, Changchun 130118, China
| | - Hongbo Wu
- College of Engineering and Technology, Jilin Agricultural University, Changchun 130118, China
| | - Tingting Jing
- College of Engineering and Technology, Jilin Agricultural University, Changchun 130118, China
| | - Tianhao Li
- College of Engineering and Technology, Jilin Agricultural University, Changchun 130118, China
| | - Jinsheng Li
- College of Engineering and Technology, Jilin Agricultural University, Changchun 130118, China
| | - Lijuan Kong
- College of Engineering and Technology, Jilin Agricultural University, Changchun 130118, China
| | - Fengwu Zhu
- College of Engineering and Technology, Jilin Agricultural University, Changchun 130118, China
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Li X, Zhang Z, Lv S, Liang T, Zou J, Ning T, Jiang C. Detection of breakage and impurity ratios for raw sugarcane based on estimation model and MDSC-DeepLabv3. Front Plant Sci 2023; 14:1283230. [PMID: 38023873 PMCID: PMC10663215 DOI: 10.3389/fpls.2023.1283230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 10/20/2023] [Indexed: 12/01/2023]
Abstract
Broken cane and impurities such as top, leaf in harvested raw sugarcane significantly influence the yield of the sugar manufacturing process. It is crucial to determine the breakage and impurity ratios for assessing the quality and price of raw sugarcane in sugar refineries. However, the traditional manual sampling approach for detecting breakage and impurity ratios suffers from subjectivity, low efficiency, and result discrepancies. To address this problem, a novel approach combining an estimation model and semantic segmentation method for breakage and impurity ratios detection was developed. A machine vision-based image acquisition platform was designed, and custom image and mass datasets of cane, broken cane, top, and leaf were created. For cane, broken cane, top, and leaf, normal fitting of mean surface densities based on pixel information and measured mass was conducted. An estimation model for the mass of each class and the breakage and impurity ratios was established using the mean surface density and pixels. Furthermore, the MDSC-DeepLabv3+ model was developed to accurately and efficiently segment pixels of the four classes of objects. This model integrates improved MobileNetv2, atrous spatial pyramid pooling with deepwise separable convolution and strip pooling module, and coordinate attention mechanism to achieve high segmentation accuracy, deployability, and efficiency simultaneously. Experimental results based on the custom image and mass datasets showed that the estimation model achieved high accuracy for breakage and impurity ratios between estimated and measured value with R2 values of 0.976 and 0.968, respectively. MDSC-DeepLabv3+ outperformed the compared models with mPA and mIoU of 97.55% and 94.84%, respectively. Compared to the baseline DeepLabv3+, MDSC-DeepLabv3+ demonstrated significant improvements in mPA and mIoU and reduced Params, FLOPs, and inference time, making it suitable for deployment on edge devices and real-time inference. The average relative errors of breakage and impurity ratios between estimated and measured values were 11.3% and 6.5%, respectively. Overall, this novel approach enables high-precision, efficient, and intelligent detection of breakage and impurity ratios for raw sugarcane.
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Affiliation(s)
| | | | - Shengping Lv
- College of Engineering, South China Agricultural University, Guangzhou, China
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Manriquez-Padilla CG, Cueva-Perez I, Dominguez-Gonzalez A, Elvira-Ortiz DA, Perez-Cruz A, Saucedo-Dorantes JJ. State of Charge Estimation Model Based on Genetic Algorithms and Multivariate Linear Regression with Applications in Electric Vehicles. Sensors (Basel) 2023; 23:2924. [PMID: 36991633 PMCID: PMC10059725 DOI: 10.3390/s23062924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 02/23/2023] [Accepted: 02/27/2023] [Indexed: 06/19/2023]
Abstract
Nowadays, the use of renewable, green/eco-friendly technologies is attracting the attention of researchers, with a view to overcoming recent challenges that must be faced to guarantee the availability of Electric Vehicles (EVs). Therefore, this work proposes a methodology based on Genetic Algorithms (GA) and multivariate regression for estimating and modeling the State of Charge (SOC) in Electric Vehicles. Indeed, the proposal considers the continuous monitoring of six load-related variables that have an influence on the SOC (State of Charge), specifically, the vehicle acceleration, vehicle speed, battery bank temperature, motor RPM, motor current, and motor temperature. Thus, these measurements are evaluated in a structure comprised of a Genetic Algorithm and a multivariate regression model in order to find those relevant signals that better model the State of Charge, as well as the Root Mean Square Error (RMSE). The proposed approach is validated under a real set of data acquired from a self-assembly Electric Vehicle, and the obtained results show a maximum accuracy of approximately 95.5%; thus, this proposed method can be applied as a reliable diagnostic tool in the automotive industry.
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Xie X, Qiu J, Feng X, Hou Y, Wang S, Jia S, Liu S, Hou X, Dou S. Spatial Distribution and Estimation Model of Soil pH in Coastal Eastern China. Int J Environ Res Public Health 2022; 19:16855. [PMID: 36554730 PMCID: PMC9779465 DOI: 10.3390/ijerph192416855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 12/12/2022] [Accepted: 12/13/2022] [Indexed: 06/17/2023]
Abstract
Soil pH is an essential indicator for assessing soil quality and soil health. In this study, based on the Chinese farmland soil survey dataset and meteorological dataset, the spatial distribution characteristics of soil pH in coastal eastern China were analyzed using kriging interpolation. The relationships between hydrothermal conditions and soil pH were explored using regression analysis with mean annual precipitation (MAP), mean annual temperature (MAT), the ratio of precipitation to temperature (P/T), and the product of precipitation and temperature (P*T) as the main explanatory variables. Based on this, a model that can rapidly estimate soil pH was established. The results showed that: (a) The spatial heterogeneity of soil pH in coastal eastern China was obvious, with the values gradually decreasing from north to south, ranging from 4.5 to 8.5; (b) soil pH was significantly correlated with all explanatory variables at the 0.01 level. In general, MAP was the main factor affecting soil pH (r = -0.7244), followed by P/T (r = -0.6007). In the regions with MAP < 800 mm, soil pH was negatively correlated with MAP (r = -0.4631) and P/T (r = -0.7041), respectively, and positively correlated with MAT (r = 0.6093) and P*T (r = 0.3951), respectively. In the regions with MAP > 800 mm, soil pH was negatively correlated with MAP (r = -0.6651), MAT (r = -0.5047), P/T (r = -0.3268), and P*T (r = -0.5808), respectively. (c) The estimation model of soil pH was: y = 23.4572 - 6.3930 × lgMAP + 0.1312 × MAT. It has been verified to have a high accuracy (r = 0.7743, p < 0.01). The mean error, the mean absolute error, and the root mean square error were 0.0450, 0.5300, and 0.7193, respectively. It provides a new path for rapid estimation of the regional soil pH, which is important for improving the management of agricultural production and slowing down soil degradation.
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Affiliation(s)
- Xiansheng Xie
- Guangxi Geographical Indication Crops Research Center of Big Data Mining and Experimental Engineering Technology, Nanning Normal University, Nanning 530001, China
- Research Institute of Forestry Policy and Information, Chinese Academy of Forestry, Beijing 100091, China
| | - Jianfei Qiu
- Jilin Academy of Agricultural Sciences, Changchun 130033, China
| | - Xinxin Feng
- School of Geography and Planning, Nanning Normal University, Nanning 530001, China
| | - Yanlin Hou
- Guangxi Geographical Indication Crops Research Center of Big Data Mining and Experimental Engineering Technology, Nanning Normal University, Nanning 530001, China
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf (Ministry of Education), Nanning Normal University, Nanning 530001, China
- Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Nanning Normal University, Nanning 530001, China
| | - Shuojin Wang
- Guangxi Geographical Indication Crops Research Center of Big Data Mining and Experimental Engineering Technology, Nanning Normal University, Nanning 530001, China
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf (Ministry of Education), Nanning Normal University, Nanning 530001, China
- Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Nanning Normal University, Nanning 530001, China
| | - Shugang Jia
- Guangxi Geographical Indication Crops Research Center of Big Data Mining and Experimental Engineering Technology, Nanning Normal University, Nanning 530001, China
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf (Ministry of Education), Nanning Normal University, Nanning 530001, China
- Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Nanning Normal University, Nanning 530001, China
| | - Shutian Liu
- Guangxi Geographical Indication Crops Research Center of Big Data Mining and Experimental Engineering Technology, Nanning Normal University, Nanning 530001, China
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf (Ministry of Education), Nanning Normal University, Nanning 530001, China
- Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Nanning Normal University, Nanning 530001, China
| | - Xianda Hou
- Guangxi Geographical Indication Crops Research Center of Big Data Mining and Experimental Engineering Technology, Nanning Normal University, Nanning 530001, China
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf (Ministry of Education), Nanning Normal University, Nanning 530001, China
- Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Nanning Normal University, Nanning 530001, China
| | - Sen Dou
- College of Resource and Environmental Science, Jilin Agricultural University, Changchun 130118, China
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Kitajima T, Schüz J, Morita A, Ikeda W, Tanaka H, Togawa K, Gabazza EC, Taki M, Toriyabe K, Ikeda T, Sokejima S. Measurement of Intermediate Frequency Magnetic Fields Generated by Household Induction Cookers for Epidemiological Studies and Development of an Exposure Estimation Model. Int J Environ Res Public Health 2022; 19:11912. [PMID: 36231220 PMCID: PMC9565691 DOI: 10.3390/ijerph191911912] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Revised: 09/10/2022] [Accepted: 09/15/2022] [Indexed: 06/16/2023]
Abstract
INTRODUCTION Exposure assessment of intermediate frequency (IF) electromagnetic fields (EMFs) is difficult and epidemiological studies are limited. In the present study, we aimed to estimate the exposure of pregnant women to IF-EMFs generated by induction cookers in the household using a questionnaire and discussed its applicability to epidemiological studies. METHOD Two main home-visit surveys were conducted: a Phase 1 survey to develop an estimation model and a Phase 2 survey to validate the model. The estimation model included the following variables: wattage, cookware diameter, and distance from the hob center (center of the stove). Four models were constructed to determine the importance of each variable and the general applicability for epidemiological studies. In addition, estimated exposure values were calculated based on the Phase 2 survey questionnaire responses and compared with the actual measured values using the Spearman rank correlation coefficient. RESULT The average value of the magnetic field measured in the Phase 1 survey was 0.23 μT (variance: 0.13) at a horizontal distance of 30 cm at the height of the cooking table. The highest validity model was inputted distance from the hob center to the body surface that is variable (correlation coefficient = 0.54, 95% confidence interval: 0.22-0.75). No clear differences were identified in the correlation coefficients for each model (z-value: 0.09-0.18, p-value: 0.86-0.93). DISCUSSION AND CONCLUSIONS No differences were found in the validity of the four models. This could be due to the biased wattage of the validation population, and for versatility it would be preferable to use three variables (distance, wattage, and estimation using the diameter of the cookware) whenever possible. To our knowledge, this is the first systematic measurement of magnetic fields generated by more than 70 induction cookers in a real household environment. This study will contribute to finding dose-response relationships in epidemiological studies of intermediate-frequency exposure without the use of instrumentation. One of the limitations of this study is it estimates instantaneous exposure in place during cooking only.
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Affiliation(s)
- Takumi Kitajima
- Department of Public Health and Occupational Medicine, Mie University Graduate School of Medicine, Tsu 514-8507, Japan
| | - Joachim Schüz
- International Agency for Research on Cancer (IARC), WHO, 69372 Lyon, France
| | - Akemi Morita
- Department of Public Health and Occupational Medicine, Mie University Graduate School of Medicine, Tsu 514-8507, Japan
| | - Wakaha Ikeda
- Epidemiology Centre for Disease Control and Prevention, Mie University Hospital, Tsu 514-8507, Japan
| | - Hirokazu Tanaka
- Division of Surveillance and Policy Evaluation, National Cancer Center Japan Institute for Cancer Control, Chuo-ku, Tokyo 104-0045, Japan
| | - Kayo Togawa
- International Agency for Research on Cancer (IARC), WHO, 69372 Lyon, France
- Division of Surveillance and Policy Evaluation, National Cancer Center Japan Institute for Cancer Control, Chuo-ku, Tokyo 104-0045, Japan
| | - Esteban C. Gabazza
- Department of Immunology, Division of Molecular and Experimental Medicine, Mie University Graduate School of Medicine, Tsu 514-8507, Japan
| | - Masao Taki
- Department of Systems Design, Tokyo Metropolitan University, Hachioji 192-0397, Japan
- Electromagnetic Compatibility Laboratory, National Institute of Information and Communications Technology, Koganei 184-0015, Japan
| | - Kuniaki Toriyabe
- Department of Obstetrics and Gynecology, Mie University Graduate School of Medicine, Tsu 514-8507, Japan
| | - Tomoaki Ikeda
- Department of Obstetrics and Gynecology, Mie University Graduate School of Medicine, Tsu 514-8507, Japan
| | - Shigeru Sokejima
- Department of Public Health and Occupational Medicine, Mie University Graduate School of Medicine, Tsu 514-8507, Japan
- Epidemiology Centre for Disease Control and Prevention, Mie University Hospital, Tsu 514-8507, Japan
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Park HY, Jung H, Lee S, Kim JW, Cho HL, Nam SS. Estimated Artificial Neural Network Modeling of Maximal Oxygen Uptake Based on Multistage 10-m Shuttle Run Test in Healthy Adults. Int J Environ Res Public Health 2021; 18:8510. [PMID: 34444259 DOI: 10.3390/ijerph18168510] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Revised: 08/11/2021] [Accepted: 08/11/2021] [Indexed: 11/17/2022]
Abstract
We aimed to develop an artificial neural network (ANN) model to estimate the maximal oxygen uptake (VO2max) based on a multistage 10 m shuttle run test (SRT) in healthy adults. For ANN-based VO2max estimation, 118 healthy Korean adults (59 men and 59 women) in their twenties and fifties (38.3 ± 11.8 years, men aged 37.8 ± 12.1 years, and women aged 38.8 ± 11.6 years) participated in this study; data included age, sex, blood pressure (systolic blood pressure (SBP), diastolic blood pressure (DBP)), waist circumference, hip circumference, waist-to-hip ratio (WHR), body composition (weight, height, body mass index (BMI), percent skeletal muscle, and percent body), 10 m SRT parameters (number of round trips and final speed), and VO2max by graded exercise test (GXT) using a treadmill. The best estimation results (R2 = 0.8206, adjusted R2 = 0.7010, root mean square error; RMSE = 3.1301) were obtained in case 3 (using age, sex, height, weight, BMI, waist circumference, hip circumference, WHR, SBP, DBP, number of round trips in 10 m SRT, and final speed in 10 m SRT), while the worst results (R2 = 0.7765, adjusted R2 = 0.7206, RMSE = 3.494) were obtained for case 1 (using age, sex, height, weight, BMI, number of round trips in 10 m SRT, and final speed in 10 m SRT). The estimation results of case 2 (using age, sex, height, weight, BMI, waist circumference, hip circumference, WHR, number of round trips in 10 m SRT, and final speed in 10 m SRT) were lower (R2 = 0.7909, adjusted R2 = 0.7072, RMSE = 3.3798) than those of case 3 and higher than those of case 1. However, all cases showed high performance (R2) in the estimation results. This brief report developed an ANN-based estimation model to predict the VO2max of healthy adults, and the model’s performance was confirmed to be excellent.
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Li L, Lin D, Wang J, Yang L, Wang Y. Multivariate Analysis Models Based on Full Spectra Range and Effective Wavelengths Using Different Transformation Techniques for Rapid Estimation of Leaf Nitrogen Concentration in Winter Wheat. Front Plant Sci 2020; 11:755. [PMID: 32676083 PMCID: PMC7333249 DOI: 10.3389/fpls.2020.00755] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Accepted: 05/12/2020] [Indexed: 05/29/2023]
Abstract
To develop a stable estimation model and identify effective wavelengths that could explain the variations in leaf nitrogen (N) concentration with different N supplies, growing seasons, ecological locations, growth stages, and wheat cultivars. Four field experiments were performed during two consecutive years (2017-2019) at three sites (Yuanyang, Hebi, and Wenxian) in Henan, China. In situ canopy spectral reflectance data under the aforementioned N supply conditions were obtained over a range of 400-950 nm (visible and near-infrared region). On the basis of the canopy raw spectral reflectance data and their subsequent transformation by two different techniques, first-derivative reflectance (FDR) and continuum removal (CR), four multivariate regression methods were comparatively analyzed and used to develop predictive models for estimating leaf N concentration: multiple linear regression (MLR), principal component regression (PCR), partial least square (PLS), and support vector machine (SVM). Results showed that leaf N concentration and canopy reflectance significantly varied with the levels of N fertilization, and a good correlation was observed for all the spectral techniques. Seven wavelengths with relatively higher r values than the bands of the raw spectra centered at 508, 525, 572, 709, 780, 876, and 925 nm were specified using the FDR technique. Based on the full wavelengths, the FDR-SVM model exhibited a good performance for leaf N concentration estimation, with coefficients of determination (r 2 val) for the validation datasets and corresponding relative percent deviations (RPDval) values of 0.842 and 2.383, respectively. However, the FDR-PLS yielded a more accurate assessment of the leaf N concentration than did the other methods, with r 2 val and RPDval values of 0.857 and 2.535, respectively. The variable importance in projection (VIP) scores from the FDR-PLS with the all canopy spectral region were used to screen the effective wavelengths of the spectral data. Therefore, six effective wavelengths centered at 525, 573, 710, 780, 875, and 924 nm were identified for leaf N concentration estimation. The SVM regression method with the effective wavelengths showed excellent performance for leaf N concentration estimation with r 2 val = 0.823 and RPDval = 2.280. These results demonstrated that the in situ canopy spectral technique is promising for the estimation of leaf N concentration in winter wheat based on the FDR-PLS regression model and the effective wavelengths identified.
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Affiliation(s)
- Lantao Li
- College of Resources and Environment, Henan Agricultural University, Zhengzhou, China
| | - Di Lin
- College of Forestry, Henan Agricultural University, Zhengzhou, China
| | - Jin Wang
- Soil and Fertilizer Station of Jiaozuo City, Jiaozuo, China
| | - Liu Yang
- College of Forestry, Henan Agricultural University, Zhengzhou, China
| | - Yilun Wang
- College of Resources and Environment, Henan Agricultural University, Zhengzhou, China
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Tao H, Feng H, Xu L, Miao M, Yang G, Yang X, Fan L. Estimation of the Yield and Plant Height of Winter Wheat Using UAV-Based Hyperspectral Images. Sensors (Basel) 2020; 20:E1231. [PMID: 32102358 DOI: 10.3390/s20041231] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Revised: 02/21/2020] [Accepted: 02/22/2020] [Indexed: 12/04/2022]
Abstract
Crop yield is related to national food security and economic performance, and it is therefore important to estimate this parameter quickly and accurately. In this work, we estimate the yield of winter wheat using the spectral indices (SIs), ground-measured plant height (H), and the plant height extracted from UAV-based hyperspectral images (HCSM) using three regression techniques, namely partial least squares regression (PLSR), an artificial neural network (ANN), and Random Forest (RF). The SIs, H, and HCSM were used as input values, and then the PLSR, ANN, and RF were trained using regression techniques. The three different regression techniques were used for modeling and verification to test the stability of the yield estimation. The results showed that: (1) HCSM is strongly correlated with H (R2 = 0.97); (2) of the regression techniques, the best yield prediction was obtained using PLSR, followed closely by ANN, while RF had the worst prediction performance; and (3) the best prediction results were obtained using PLSR and training using a combination of the SIs and HCSM as inputs (R2 = 0.77, RMSE = 648.90 kg/ha, NRMSE = 10.63%). Therefore, it can be concluded that PLSR allows the accurate estimation of crop yield from hyperspectral remote sensing data, and the combination of the SIs and HCSM allows the most accurate yield estimation. The results of this study indicate that the crop plant height extracted from UAV-based hyperspectral measurements can improve yield estimation, and that the comparative analysis of PLSR, ANN, and RF regression techniques can provide a reference for agricultural management.
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Popp WL, Schneider S, Bär J, Bösch P, Spengler CM, Gassert R, Curt A. Wearable Sensors in Ambulatory Individuals With a Spinal Cord Injury: From Energy Expenditure Estimation to Activity Recommendations. Front Neurol 2019; 10:1092. [PMID: 31736845 PMCID: PMC6838774 DOI: 10.3389/fneur.2019.01092] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Accepted: 09/30/2019] [Indexed: 12/13/2022] Open
Abstract
Inappropriate physical inactivity is a global health problem increasing the risk of cardiometabolic diseases. Wearable sensors show great potential to promote physical activity and thus a healthier lifestyle. While commercial activity trackers are available to estimate energy expenditure (EE) in non-disabled individuals, they are not designed for reliable assessments in individuals with an incomplete spinal cord injury (iSCI). Furthermore, activity recommendations for this population are currently rather vague and not tailored to their individual needs, and activity guidelines provided for the non-disabled population may not be easily translated for this population. However, especially in iSCI individuals with impaired abilities to stand and walk, the assessment of physical activities and appropriate recommendations for a healthy lifestyle are challenging. Therefore, the study aimed at developing an EE estimation model for iSCI individuals able to walk based on wearable sensor data. Additionally, the data collected within this study was used to translate common activity recommendations for the non-disabled population to easily understandable activity goals for ambulatory individuals with an iSCI. In total, 30 ambulatory individuals with an iSCI were equipped with wearable sensors while performing 12 different physical activities. EE was measured continuously and demographic and anthropometric variables, clinical assessment scores as well as wearable-sensor-derived features were used to develop different EE estimation models. The best EE estimation model comprised the estimation of resting EE using the updated Harris-Benedict equation, classifying activities using a k-nearest neighbor algorithm, and applying a multiple linear regression-based EE estimation model for each activity class. The mean absolute estimation error of this model was 15.2 ± 6.3% and the corresponding mean signed error was −3.4 ± 8.9%. Translating activity recommendations of global health institutions, we suggest a minimum of 2,000–3,000 steps per day for ambulatory individuals with an iSCI. If ambulatory individuals with an iSCI targeted the popular 10,000 steps a day recommendation for the non-disabled population, their equivalent would be around 8,000 steps a day. The combination of the presented dedicated EE estimation model for ambulatory individuals with an iSCI and the translated activity recommendations is an important step toward promoting an active lifestyle in this population.
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Affiliation(s)
- Werner L Popp
- Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland.,Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Eidgenössische Technische Hochschule (ETH) Zürich, Zurich, Switzerland
| | - Sophie Schneider
- Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland
| | - Jessica Bär
- Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland
| | - Philipp Bösch
- Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland.,Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Eidgenössische Technische Hochschule (ETH) Zürich, Zurich, Switzerland
| | - Christina M Spengler
- Exercise Physiology Lab, Department of Health Sciences and Technology, Eidgenössische Technische Hochschule (ETH) Zürich, Zurich, Switzerland
| | - Roger Gassert
- Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Eidgenössische Technische Hochschule (ETH) Zürich, Zurich, Switzerland
| | - Armin Curt
- Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland
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Park SC, Lee K, Kim YO, Won S, Chun J. Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size. Front Microbiol 2019; 10:834. [PMID: 31068915 PMCID: PMC6491781 DOI: 10.3389/fmicb.2019.00834] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Accepted: 04/01/2019] [Indexed: 11/13/2022] Open
Abstract
For more than a decade, pan-genome analysis has been applied as an effective method for explaining the genetic contents variation of prokaryotic species. However, genomic characteristics and detailed structures of gene pools have not been fully clarified, because most studies have used a small number of genomes. Here, we constructed pan-genomes of seven species in order to elucidate variations in the genetic contents of >27,000 genomes belonging to Streptococcus pneumoniae, Staphylococcus aureus subsp. aureus, Salmonella enterica subsp. enterica, Escherichia coli and Shigella spp., Mycobacterium tuberculosis complex, Pseudomonas aeruginosa, and Acinetobacter baumannii. This work showed the pan-genomes of all seven species has open property. Additionally, systematic evaluation of the characteristics of their pan-genome revealed that phylogenetic distance provided valuable information for estimating the parameters for pan-genome size among several models including Heaps' law. Our results provide a better understanding of the species and a solution to minimize sampling biases associated with genome-sequencing preferences for pathogenic strains.
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Affiliation(s)
- Sang-Cheol Park
- Institute of Health and Environment, Seoul National University, Seoul, South Korea
| | - Kihyun Lee
- Department of Systems Biotechnology, Chung-Ang University, Anseong, South Korea
| | - Yeong Ouk Kim
- Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, South Korea
| | - Sungho Won
- Institute of Health and Environment, Seoul National University, Seoul, South Korea.,Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, South Korea.,Department of Public Health Sciences, Seoul National University, Seoul, South Korea
| | - Jongsik Chun
- Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, South Korea.,Department of Biological Sciences and Institute of Molecular Biology and Genetics, Seoul National University, Seoul, South Korea
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11
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Popp WL, Richner L, Brogioli M, Wilms B, Spengler CM, Curt AEP, Starkey ML, Gassert R. Estimation of Energy Expenditure in Wheelchair-Bound Spinal Cord Injured Individuals Using Inertial Measurement Units. Front Neurol 2018; 9:478. [PMID: 30018586 PMCID: PMC6037746 DOI: 10.3389/fneur.2018.00478] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Accepted: 06/01/2018] [Indexed: 01/29/2023] Open
Abstract
A healthy lifestyle reduces the risk of cardio-vascular disease. As wheelchair-bound individuals with spinal cord injury (SCI) are challenged in their activities, promoting and coaching an active lifestyle is especially relevant. Although there are many commercial activity trackers available for the able-bodied population, including those providing feedback about energy expenditure (EE), activity trackers for the SCI population are largely lacking, or are limited to a small set of activities performed in controlled settings. The aims of the present study were to develop and validate an algorithm based on inertial measurement unit (IMU) data to continuously monitor EE in wheelchair-bound individuals with a SCI, and to establish reference activity values for a healthy lifestyle in this population. For this purpose, EE was measured in 30 subjects each wearing four IMUs during 12 different physical activities, randomly selected from a list of 24 activities of daily living. The proposed algorithm consists of three parts: resting EE estimation based on multi-linear regression, an activity classification using a k-nearest-neighbors algorithm, and EE estimation based on artificial neural networks (ANNs). The mean absolute estimation error for the ANN-based algorithm was 14.4% compared to indirect calorimeter measurements. Based on reference values from the literature and the data collected within this study, we recommend wheeling 3 km per day for a healthy lifestyle in wheelchair-bound SCI individuals. Combining the proposed algorithm with a recommendation for physical activity provides a powerful tool for the promotion of an active lifestyle in the SCI population, thereby reducing the risk for secondary diseases.
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Affiliation(s)
- Werner L Popp
- Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland.,Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland
| | - Lea Richner
- Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland.,Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland
| | - Michael Brogioli
- Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland
| | - Britta Wilms
- Exercise Physiology Lab, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland.,Department of Internal Medicine I, University of Lübeck, Lübeck, Germany
| | - Christina M Spengler
- Exercise Physiology Lab, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland
| | - Armin E P Curt
- Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland
| | - Michelle L Starkey
- Spinal Cord Injury Center, Balgrist University Hospital, Zurich, Switzerland.,Department of Clinical Neurosciences & MRC Centre for Stem Cell Biology and Regenerative Medicine, University of Cambridge, Cambridge, United Kingdom
| | - Roger Gassert
- Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland
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12
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Liu Z, Li H, Cao G. Quick Estimation Model for the Concentration of Indoor Airborne Culturable Bacteria: An Application of Machine Learning. Int J Environ Res Public Health 2017; 14:ijerph14080857. [PMID: 28758941 PMCID: PMC5580561 DOI: 10.3390/ijerph14080857] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/03/2017] [Revised: 07/22/2017] [Accepted: 07/27/2017] [Indexed: 11/25/2022]
Abstract
Indoor airborne culturable bacteria are sometimes harmful to human health. Therefore, a quick estimation of their concentration is particularly necessary. However, measuring the indoor microorganism concentration (e.g., bacteria) usually requires a large amount of time, economic cost, and manpower. In this paper, we aim to provide a quick solution: using knowledge-based machine learning to provide quick estimation of the concentration of indoor airborne culturable bacteria only with the inputs of several measurable indoor environmental indicators, including: indoor particulate matter (PM2.5 and PM10), temperature, relative humidity, and CO2 concentration. Our results show that a general regression neural network (GRNN) model can sufficiently provide a quick and decent estimation based on the model training and testing using an experimental database with 249 data groups.
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Affiliation(s)
- Zhijian Liu
- Department of Power Engineering, School of Energy, Power and Mechanical Engineering, North China Electric Power University, Baoding 071003, China.
| | - Hao Li
- Department of Chemistry, The University of Texas at Austin, 105 E. 24th Street, Stop A5300, Austin, TX 78712, USA.
- Institute for Computational and Engineering Sciences, The University of Texas at Austin, 105 E. 24th Street, Stop A5300, Austin, TX 78712, USA.
| | - Guoqing Cao
- Institute of Building Environment and Energy, China Academy of Building Research, Beijing 100013, China.
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13
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Endoh K, Matsui Y, Takeshita M, Katashima M, Yasunaga K, Kuriki K. Actual Daily Intakes of Tea Catechins and Thier Estimation According to Four Season 3 Day Weighed Dietary Records and a Short Food Frequency Questionnaire among Japanese Men and Women. Asian Pac J Cancer Prev 2017; 18:2875-2881. [PMID: 29072829 PMCID: PMC5747417 DOI: 10.22034/apjcp.2017.18.10.2875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Background: Tea catechins are considered to be important preventive factors of cancer on several organs; however,
the relationships of the actual daily intakes (ADIs) on the preventive effects have not been adequately addressed. We
measured the ADIs of tea catechins as annual averages derived from every their ingested cups recorded by each subject,
and the estimation models were established considering tea origin. Methods: Fifty-nine Japanese men and women
completed four season 3 day weighed dietary records (WDRs) and a food frequency questionnaire (FFQ), and samples
of green, oolong and black teas, ingested during a total 12 days were collected for the analysis. The ADIs of the total and
composed catechins of all tea samples were measured by a high-performance liquid chromatography. The estimation
models for the ADIs (R2: coefficient of determination) based on the WDRs and FFQ were established with multiple
regression analysis using appropriate confounding factors. Results: The ADIs of total catechins and epigallocatechin
gallate (EGCg) were 110 and 21.4 mg/day in men and 157 and 34.7 mg/day in women, respectively. The total catechins
ADIs were positively associated with green tea consumption based on WDRs and FFQ (adjusted R2 =0.421 and 0.341
for men and 0.346 and 0.238 for women, p<0.05 for all, respectively). Likewise, the EGCg ADIs were associated with
green tea intake derived from WDRs and FFQ, respectively. Conclusions: We revealed the ADIs of total catechins
and EGCg as annual averages could establish their estimation models. These provide reference information to clarify
their relationships with cancer risks.
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Affiliation(s)
- Kaori Endoh
- Laboratory of Public Health, Division of Nutritional Sciences, School of Food and Nutritional Sciences, University of Shizuoka, Shizuoka, Japan
| | - Yuji Matsui
- R and D, Department Research- Health Care Food Research, Kao Corporation, Tokyo, Japan
| | - Masao Takeshita
- R and D, Department Research- Health Care Food Research, Kao Corporation, Tokyo, Japan
| | - Mitsuhiro Katashima
- R and D, Department Research- Health Care Food Research, Kao Corporation, Tokyo, Japan
| | - Koichi Yasunaga
- R and D, Department Research- Health Care Food Research, Kao Corporation, Tokyo, Japan
| | - Kiyonori Kuriki
- Laboratory of Public Health, Division of Nutritional Sciences, School of Food and Nutritional Sciences, University of Shizuoka, Shizuoka, Japan,For Correspondence:
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14
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Yang XL, Wei XR, Shao MA. [Stem biomass estimation models for dominant shrubs on the northern Loess Plateau of China]. Ying Yong Sheng Tai Xue Bao 2016; 27:3164-3172. [PMID: 29726141 DOI: 10.13287/j.1001-9332.201610.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
A total of 200 stems of Caragana korshinskii and 210 stems of Salix psammophila were collected in the late August of 2015 in the Liudaogou catchment of Shenmu County, Shaanxi Pro-vince, China. Basal diameter (D), length (H), water content (W0), fresh mass (WF) and dry mass (W) were measured for each stem of the two species. Exponential and allometric equations were used to establish relationship models relating stem biomass to its morphological parameters. Altogether four models were established for each species, and their accuracy of estimation was also validated. The results showed that, the allometric model that used D2H as input variable was optimal in estimating stem biomass for C. korshinskii and S. psammophila, after transformed into its linear form. Meanwhile, the heteroscedasticity of the biomass data was greatly eliminated. This model had a maximum value of coefficient of determination (R2), and meanwhile minimum values of mean error (ME), mean absolute error (MAE), total relative error (TRE), mean systematic error (MSE), and mean absolute percentage error (MPSE), thus basically meeting the requirement of the accuracy in ecological study.
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Affiliation(s)
- Xian Long Yang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China.,State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Xiao Rong Wei
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China.,State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Ming An Shao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, Shaanxi, China.,Institute of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China
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15
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Dong J, Dai W, Xu J, Li S. Spectral Estimation Model Construction of Heavy Metals in Mining Reclamation Areas. Int J Environ Res Public Health 2016; 13:ijerph13070640. [PMID: 27367708 PMCID: PMC4962181 DOI: 10.3390/ijerph13070640] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2016] [Revised: 06/13/2016] [Accepted: 06/22/2016] [Indexed: 11/29/2022]
Abstract
The study reported here examined, as the research subject, surface soils in the Liuxin mining area of Xuzhou, and explored the heavy metal content and spectral data by establishing quantitative models with Multivariable Linear Regression (MLR), Generalized Regression Neural Network (GRNN) and Sequential Minimal Optimization for Support Vector Machine (SMO-SVM) methods. The study results are as follows: (1) the estimations of the spectral inversion models established based on MLR, GRNN and SMO-SVM are satisfactory, and the MLR model provides the worst estimation, with R2 of more than 0.46. This result suggests that the stress sensitive bands of heavy metal pollution contain enough effective spectral information; (2) the GRNN model can simulate the data from small samples more effectively than the MLR model, and the R2 between the contents of the five heavy metals estimated by the GRNN model and the measured values are approximately 0.7; (3) the stability and accuracy of the spectral estimation using the SMO-SVM model are obviously better than that of the GRNN and MLR models. Among all five types of heavy metals, the estimation for cadmium (Cd) is the best when using the SMO-SVM model, and its R2 value reaches 0.8628; (4) using the optimal model to invert the Cd content in wheat that are planted on mine reclamation soil, the R2 and RMSE between the measured and the estimated values are 0.6683 and 0.0489, respectively. This result suggests that the method using the SMO-SVM model to estimate the contents of heavy metals in wheat samples is feasible.
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Affiliation(s)
- Jihong Dong
- School of Environment Science and Spatial Informatics, China University of Mining & Technology, Xuzhou 221116, China.
- Jiangsu Key Laboratory of Resources and Environmental Information Engineering, China University of Mining & Technology, Xuzhou 221116, China.
| | - Wenting Dai
- School of Environment Science and Spatial Informatics, China University of Mining & Technology, Xuzhou 221116, China.
- Jiangsu Key Laboratory of Resources and Environmental Information Engineering, China University of Mining & Technology, Xuzhou 221116, China.
| | - Jiren Xu
- School of Geography, University of Leeds, Leeds LS2 9JT, UK.
| | - Songnian Li
- School of Environment Science and Spatial Informatics, China University of Mining & Technology, Xuzhou 221116, China.
- Department of Civil Engineering, Ryerson University, Toronto, ON M5B 2K3, Canada.
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Wittek A, Karatolios K, Bihari P, Schmitz-Rixen T, Moosdorf R, Vogt S, Blase C. In vivo determination of elastic properties of the human aorta based on 4D ultrasound data. J Mech Behav Biomed Mater 2013; 27:167-83. [PMID: 23668998 DOI: 10.1016/j.jmbbm.2013.03.014] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2012] [Revised: 03/20/2013] [Accepted: 03/22/2013] [Indexed: 11/15/2022]
Abstract
Computational analysis of the biomechanics of the vascular system aims at a better understanding of its physiology and pathophysiology. To be of clinical use, however, these models and thus their predictions, have to be patient specific regarding geometry, boundary conditions and material. In this paper we present an approach to determine individual material properties of human aortae based on a new type of in vivo full field displacement data acquired by dimensional time resolved three dimensional ultrasound (4D-US) imaging. We developed a nested iterative Finite Element Updating method to solve two coupled inverse problems: The prestrains that are present in the imaged diastolic configuration of the aortic wall are determined. The solution of this problem is integrated in an iterative method to identify the nonlinear hyperelastic anisotropic material response of the aorta to physiologic deformation states. The method was applied to 4D-US data sets of the abdominal aorta of five healthy volunteers and verified by a numerical experiment. This non-invasive in vivo technique can be regarded as a first step to determine patient individual material properties of the human aorta.
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Affiliation(s)
- Andreas Wittek
- Institute for Cell Biology and Neuroscience, Goethe University, Max-von-Laue-Strasse 13, 60438 Frankfurt/Main, Germany
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