A Fusion Algorithm Based on a Constant Velocity Model for Improving the Measurement of Saccade Parameters with Electrooculography

Electrooculography (EOG) serves as a widely employed technique for tracking saccadic eye movements in a diverse array of applications. These encompass the identification of various medical conditions and the development of interfaces facilitating human-computer interaction. Nonetheless, EOG signals are often met with skepticism due to the presence of multiple sources of noise interference. These sources include electroencephalography, electromyography linked to facial and extraocular muscle activity, electrical noise, signal artifacts, skin-electrode drifts, impedance fluctuations over time, and a host of associated challenges. Traditional methods of addressing these issues, such as bandpass filtering, have been frequently utilized to overcome these challenges but have the associated drawback of altering the inherent characteristics of EOG signals, encompassing their shape, magnitude, peak velocity, and duration, all of which are pivotal parameters in research studies. In prior work, several model-based adaptive denoising strategies have been introduced, incorporating mechanical and electrical model-based state estimators. However, these approaches are really complex and rely on brain and neural control models that have difficulty processing EOG signals in real time. In this present investigation, we introduce a real-time denoising method grounded in a constant velocity model, adopting a physics-based model-oriented approach. This approach is underpinned by the assumption that there exists a consistent rate of change in the cornea-retinal potential during saccadic movements. Empirical findings reveal that this approach remarkably preserves EOG saccade signals, resulting in a substantial enhancement of up to 29% in signal preservation during the denoising process when compared to alternative techniques, such as bandpass filters, constant acceleration models, and model-based fusion methods.

An Adaptively Parameterized Algorithm Estimating Respiratory Rate from a Passive Wearable RFID Smart Garment

Currently, wired respiratory rate sensors tether patients to a location and can potentially obscure their body from medical staff. In addition, current wired respiratory rate sensors are either inaccurate or invasive. Spurred by these deficiencies, we have developed the Bellyband, a less invasive smart garment sensor, which uses wireless, passive Radio Frequency Identification (RFID) to detect bio-signals. Though the Bellyband solves many physical problems, it creates a signal processing challenge, due to its noisy, quantized signal. Here, we present an algorithm by which to estimate respiratory rate from the Bellyband. The algorithm uses an adaptively parameterized Savitzky-Golay (SG) filter to smooth the signal. The adaptive parameterization enables the algorithm to be effective on a wide range of respiratory frequencies, even when the frequencies change sharply. Further, the algorithm is three times faster and three times more accurate than the current Bellyband respiratory rate detection algorithm and is able to run in real time. Using an off-the-shelf respiratory monitor and metronome-synchronized breathing, we gathered 25 sets of data and tested the algorithm against these trials. The algorithm's respiratory rate estimates diverged from ground truth by an average Root Mean Square Error (RMSE) of 4.1 breaths per minute (BPM) over all 25 trials. Further, preliminary results suggest that the algorithm could be made as or more accurate than widely used algorithms that detect the respiratory rate of non-ventilated patients using data from an Electrocardiogram (ECG) or Impedance Plethysmography (IP).

Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top-Down Mass Spectrometry

Complex proteoforms contain various primary structural alterations resulting from variations in genes, RNA, and proteins. Top-down mass spectrometry is commonly used for analyzing complex proteoforms because it provides whole sequence information of the proteoforms. Proteoform identification by top-down mass spectral database search is a challenging computational problem because the types and/or locations of some alterations in target proteoforms are in general unknown. Although spectral alignment and mass graph alignment algorithms have been proposed for identifying proteoforms with unknown alterations, they are extremely slow to align millions of spectra against tens of thousands of protein sequences in high throughput proteome level analyses. Many software tools in this area combine efficient protein sequence filtering algorithms and spectral alignment algorithms to speed up database search. As a result, the performance of these tools heavily relies on the sensitivity and efficiency of their filtering algorithms. Here, we propose two efficient approximate spectrum-based filtering algorithms for proteoform identification. We evaluated the performances of the proposed algorithms and four existing ones on simulated and real top-down mass spectrometry data sets. Experiments showed that the proposed algorithms outperformed the existing ones for complex proteoform identification. In addition, combining the proposed filtering algorithms and mass graph alignment algorithms identified many proteoforms missed by ProSightPC in proteome-level proteoform analyses.

ECG artefact identification and removal in mHealth systems for continuous patient monitoring

Continuous patient monitoring systems acquire enormous amounts of data that is either manually analysed by doctors or automatically processed using intelligent algorithms. Sections of data acquired over long period of time can be corrupted with artefacts due to patient movement, sensor placement and interference from other sources. Owing to the large volume of data these artefacts need to be automatically identified so that the analysis systems and doctors are aware of them while making medical diagnosis. Three important factors are explored that must be considered and quantified for the design and evaluation of automatic artefact identification algorithms: signal quality, interpretation quality and computational complexity. The first two are useful to determine the effectiveness of an algorithm, whereas the third is particularly vital in mHealth systems where computational resources are heavily constrained. A series of artefact identification and filtering algorithms are then presented focusing on the electrocardiography data. These algorithms are quantified using the three metrics to demonstrate how different algorithms can be evaluated and compared to select the best ones for a given wireless sensor network.