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Szatmári Á, Cserép GB, Molnár TÁ, Söveges B, Biró A, Várady G, Szabó E, Németh K, Kele P. A Genetically Encoded Isonitrile Lysine for Orthogonal Bioorthogonal Labeling Schemes. Molecules 2021; 26:molecules26164988. [PMID: 34443576 PMCID: PMC8402055 DOI: 10.3390/molecules26164988] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 07/30/2021] [Accepted: 08/12/2021] [Indexed: 01/11/2023] Open
Abstract
Bioorthogonal click-reactions represent ideal means for labeling biomolecules selectively and specifically with suitable small synthetic dyes. Genetic code expansion (GCE) technology enables efficient site-selective installation of bioorthogonal handles onto proteins of interest (POIs). Incorporation of bioorthogonalized non-canonical amino acids is a minimally perturbing means of enabling the study of proteins in their native environment. The growing demand for the multiple modification of POIs has triggered the quest for developing orthogonal bioorthogonal reactions that allow simultaneous modification of biomolecules. The recently reported bioorthogonal [4 + 1] cycloaddition reaction of bulky tetrazines and sterically demanding isonitriles has prompted us to develop a non-canonical amino acid (ncAA) bearing a suitable isonitrile function. Herein we disclose the synthesis and genetic incorporation of this ncAA together with studies aiming at assessing the mutual orthogonality between its reaction with bulky tetrazines and the inverse electron demand Diels–Alder (IEDDA) reaction of bicyclononyne (BCN) and tetrazine. Results showed that the new ncAA, bulky-isonitrile-carbamate-lysine (BICK) is efficiently and specifically incorporated into proteins by genetic code expansion, and despite the slow [4 + 1] cycloaddition, enables the labeling of outer membrane receptors such as insulin receptor (IR) with a membrane-impermeable dye. Furthermore, double labeling of protein structures in live and fixed mammalian cells was achieved using the mutually orthogonal bioorthogonal IEDDA and [4 + 1] cycloaddition reaction pair, by introducing BICK through GCE and BCN through a HaloTag technique.
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Affiliation(s)
- Ágnes Szatmári
- Chemical Biology Research Group, Institute of Organic Chemistry, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.B.C.); (T.Á.M.); (B.S.); (A.B.)
- Correspondence: (Á.S.); (K.N.); (P.K.)
| | - Gergely B. Cserép
- Chemical Biology Research Group, Institute of Organic Chemistry, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.B.C.); (T.Á.M.); (B.S.); (A.B.)
| | - Tibor Á. Molnár
- Chemical Biology Research Group, Institute of Organic Chemistry, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.B.C.); (T.Á.M.); (B.S.); (A.B.)
| | - Bianka Söveges
- Chemical Biology Research Group, Institute of Organic Chemistry, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.B.C.); (T.Á.M.); (B.S.); (A.B.)
| | - Adrienn Biró
- Chemical Biology Research Group, Institute of Organic Chemistry, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.B.C.); (T.Á.M.); (B.S.); (A.B.)
| | - György Várady
- Molecular Cell Biology Research Group, Institute of Enzymology, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.V.); (E.S.)
| | - Edit Szabó
- Molecular Cell Biology Research Group, Institute of Enzymology, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.V.); (E.S.)
| | - Krisztina Németh
- Chemical Biology Research Group, Institute of Organic Chemistry, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.B.C.); (T.Á.M.); (B.S.); (A.B.)
- Correspondence: (Á.S.); (K.N.); (P.K.)
| | - Péter Kele
- Chemical Biology Research Group, Institute of Organic Chemistry, ELKH Research Centre for Natural Sciences, Magyar Tudósok Krt 2, H-1117 Budapest, Hungary; (G.B.C.); (T.Á.M.); (B.S.); (A.B.)
- Correspondence: (Á.S.); (K.N.); (P.K.)
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