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Brackenier Y, Wang N, Liao C, Cao X, Schauman S, Yurt M, Cordero-Grande L, Malik SJ, Kerr A, Hajnal JV, Setsompop K. Rapid and accurate navigators for motion and B 0 tracking using QUEEN: Quantitatively enhanced parameter estimation from navigators. Magn Reson Med 2024; 91:2028-2043. [PMID: 38173304 DOI: 10.1002/mrm.29976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2023] [Revised: 11/28/2023] [Accepted: 11/29/2023] [Indexed: 01/05/2024]
Abstract
PURPOSE To develop a framework that jointly estimates rigid motion and polarizing magnetic field (B0 ) perturbations (δ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ ) for brain MRI using a single navigator of a few milliseconds in duration, and to additionally allow for navigator acquisition at arbitrary timings within any type of sequence to obtain high-temporal resolution estimates. THEORY AND METHODS Methods exist that match navigator data to a low-resolution single-contrast image (scout) to estimate either motion orδ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ . In this work, called QUEEN (QUantitatively Enhanced parameter Estimation from Navigators), we propose combined motion andδ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ estimation from a fast, tailored trajectory with arbitrary-contrast navigator data. To this end, the concept of a quantitative scout (Q-Scout) acquisition is proposed from which contrast-matched scout data is predicted for each navigator. Finally, navigator trajectories, contrast-matched scout, andδ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ are integrated into a motion-informed parallel-imaging framework. RESULTS Simulations and in vivo experiments show the need to modelδ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ to obtain accurate motion parameters estimated in the presence of strongδ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ . Simulations confirm that tailored navigator trajectories are needed to robustly estimate both motion andδ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ . Furthermore, experiments show that a contrast-matched scout is needed for parameter estimation from multicontrast navigator data. A retrospective, in vivo reconstruction experiment shows improved image quality when using the proposed Q-Scout and QUEEN estimation. CONCLUSIONS We developed a framework to jointly estimate rigid motion parameters andδ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ from navigators. Combing a contrast-matched scout with the proposed trajectory allows for navigator deployment in almost any sequence and/or timing, which allows for higher temporal-resolution motion andδ B 0 $$ \delta {\mathbf{B}}_{\mathbf{0}} $$ estimates.
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Affiliation(s)
| | - Nan Wang
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Congyu Liao
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Xiaozhi Cao
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Sophie Schauman
- Department of Radiology, Stanford University, Stanford, California, USA
| | - Mahmut Yurt
- Department of Radiology, Stanford University, Stanford, California, USA
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - Lucilio Cordero-Grande
- Biomedical Image Technologies, ETSI Telecomunicación, Universidad Politécnica de Madrid and CIBER-BNN, Madrid, Spain
| | - Shaihan J Malik
- Biomedical Engineering Department, School of Biomedical Engineering and Imaging Sciences, King's College London, London, UK
- Center for the Developing Brain, School of Biomedical Engineering and Imaging Sciences, King's College London, London, UK
| | - Adam Kerr
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
- Cognitive and Neurobiological Imaging, Stanford University, Stanford, California, USA
| | - Joseph V Hajnal
- Biomedical Engineering Department, School of Biomedical Engineering and Imaging Sciences, King's College London, London, UK
- Center for the Developing Brain, School of Biomedical Engineering and Imaging Sciences, King's College London, London, UK
| | - Kawin Setsompop
- Department of Radiology, Stanford University, Stanford, California, USA
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
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Qing K, Yue NJ, Hathout L, Ma C, Reyhan M, Zhu J, Nie K, Monte G, Vergalasova I. The combined use of 2D scout and 3D axial CT images to accurately determine the catheter tips for high-dose-rate brachytherapy plans. J Appl Clin Med Phys 2021; 22:273-278. [PMID: 33638579 PMCID: PMC7984491 DOI: 10.1002/acm2.13184] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Revised: 11/23/2020] [Accepted: 02/06/2021] [Indexed: 11/09/2022] Open
Abstract
Purpose To develop a method combining CT scout images with axial images to improve the localization accuracy of catheter tips in high‐dose‐rate (HDR) brachytherapy treatments. Materials and Methods CT scout images were utilized along with conventionally reconstructed axial images to aid the localization of catheter tips used during HDR treatment planning. A method was developed to take advantage of the finer image resolution of the scout images to more precisely identify the tip coordinates. The accuracies of this method were compared with the conventional method based on the axial CT images alone, for various slice thicknesses, in a computed tomography dose index (CTDI) head phantom. A clinical case which involved multiple interstitial catheters was also selected for the evaluation of this method. Locations of the catheter tips were reconstructed with the conventional CT‐based method and this newly developed method, respectively. Location coordinates obtained via both methods were quantitatively compared. Results Combination of the scout and axial CT images improved the accuracy of identification and reconstruction of catheter tips along the longitudinal direction (i.e., head‐to‐foot direction, more or less parallel to the catheter tracks), compared to relying on the axial CT images alone. The degree of improvement was dependent on CT slice thickness. For the clinical patient case, the coordinate differences of the reconstructed catheter tips were 2.6 mm ± 0.9 mm in the head‐to‐foot direction, 0.4 mm ± 0.2 mm in the left‐to‐right direction, and 0.6 mm ± 0.2 mm in the anterior‐to‐posterior direction, respectively. Conclusion Combining CT scout and axial images demonstrates the ability to provide a more accurate identification and reconstruction of the interstitial catheter tips for HDR brachytherapy treatment, especially in the longitudinal direction. The method developed in this work has the potential to be implemented clinically together with automatic segmentation in modern brachytherapy treatment planning systems, in order to improve the reconstruction accuracy of HDR catheters.
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Affiliation(s)
- Kun Qing
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA.,Department of Radiation Oncology, City of Hope National Medical Center, Duarte, CA, 91010, USA
| | - Ning J Yue
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Lara Hathout
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Chi Ma
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Meral Reyhan
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Jiahua Zhu
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Ke Nie
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Gilbert Monte
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Irina Vergalasova
- Department of Radiation Oncology, Cancer Institute of New Jersey, Rutgers University, New Brunswick, NJ, 08901, USA
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Cook CN, Mosquiero T, Brent CS, Ozturk C, Gadau J, Pinter-Wollman N, Smith BH. Individual differences in learning and biogenic amine levels influence the behavioural division between foraging honeybee scouts and recruits. J Anim Ecol 2019; 88:236-246. [PMID: 30289166 PMCID: PMC6379132 DOI: 10.1111/1365-2656.12911] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Accepted: 08/31/2018] [Indexed: 11/29/2022]
Abstract
Animals must effectively balance the time they spend exploring the environment for new resources and exploiting them. One way that social animals accomplish this balance is by allocating these two tasks to different individuals. In honeybees, foraging is divided between scouts, which tend to explore the landscape for novel resources, and recruits, which tend to exploit these resources. Exploring the variation in cognitive and physiological mechanisms of foraging behaviour will provide a deeper understanding of how the division of labour is regulated in social insect societies. Here, we uncover how honeybee foraging behaviour may be shaped by predispositions in performance of latent inhibition (LI), which is a form of non-associative learning by which individuals learn to ignore familiar information. We compared LI between scouts and recruits, hypothesizing that differences in learning would correlate with differences in foraging behaviour. Scouts seek out and encounter many new odours while locating novel resources, while recruits continuously forage from the same resource, even as its quality degrades. We found that scouts show stronger LI than recruits, possibly reflecting their need to discriminate forage quality. We also found that scouts have significantly elevated tyramine compared to recruits. Furthermore, after associative odour training, recruits have significantly diminished octopamine in their brains compared to scouts. These results suggest that individual variation in learning behaviour shapes the phenotypic behavioural differences between different types of honeybee foragers. These differences in turn have important consequences for how honeybee colonies interact with their environment. Uncovering the proximate mechanisms that influence individual variation in foraging behaviour is crucial for understanding the ecological context in which societies evolve.
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Affiliation(s)
- Chelsea N Cook
- Arizona State University, School of Life Sciences, Tempe, Arizona
| | - Thiago Mosquiero
- University of California at Los Angeles, Department of Evolutionary Biology, Los Angeles, California
| | - Colin S. Brent
- USDA – ALARC, Department of Pest Management, Maricopa, Arizona
| | - Cahit Ozturk
- Arizona State University, School of Life Sciences, Tempe, Arizona
| | - Jürgen Gadau
- Institute for Evolution and Biodiversity, University of Münster Germany
| | - Noa Pinter-Wollman
- University of California at Los Angeles, Department of Evolutionary Biology, Los Angeles, California
| | - Brian H. Smith
- Arizona State University, School of Life Sciences, Tempe, Arizona
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