1
|
Vladimer G, Alt I, Sehlke R, Lobley A, Baumgärtler C, Stulic M, Hackner K, Dzurillova L, Petru E, Hadjari L, Lafleur J, Singer J, Krall N, Šufliarsky J, Hefler L, Fuereder T, Taubert C, Boudesco C, Payne A. 23P Enriching for response: Patient selection criteria for A2AR inhibition by EXS-21546 through ex vivo modelling in primary patient material. Immuno-Oncology and Technology 2022. [DOI: 10.1016/j.iotech.2022.100128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
|
2
|
Godin-Heymann N, Brabetz S, Murillo MM, Saponaro M, Santos CR, Lobley A, East P, Chakravarty P, Matthews N, Kelly G, Jordan S, Castellano E, Downward J. Tumour-suppression function of KLF12 through regulation of anoikis. Oncogene 2016; 35:3324-34. [PMID: 26455320 PMCID: PMC4929484 DOI: 10.1038/onc.2015.394] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2015] [Revised: 08/11/2015] [Accepted: 09/05/2015] [Indexed: 12/14/2022]
Abstract
Suppression of detachment-induced cell death, known as anoikis, is an essential step for cancer metastasis to occur. We report here that expression of KLF12, a member of the Kruppel-like family of transcription factors, is downregulated in lung cancer cell lines that have been selected to grow in the absence of cell adhesion. Knockdown of KLF12 in parental cells results in decreased apoptosis following cell detachment from matrix. KLF12 regulates anoikis by promoting the cell cycle transition through S phase and therefore cell proliferation. Reduced expression levels of KLF12 results in increased ability of lung cancer cells to form tumours in vivo and is associated with poorer survival in lung cancer patients. We therefore identify KLF12 as a novel metastasis-suppressor gene whose loss of function is associated with anoikis resistance through control of the cell cycle.
Collapse
Affiliation(s)
- N Godin-Heymann
- Signal Transduction, Cancer Research UK London Research Institute, London, UK
| | - S Brabetz
- Signal Transduction, Cancer Research UK London Research Institute, London, UK
| | - M M Murillo
- Signal Transduction, Cancer Research UK London Research Institute, London, UK
- The Institute of Cancer Research, London, UK
| | - M Saponaro
- Mechanisms of Gene Transcription Laboratory, Cancer Research UK London Research Institute, Clare Hall Laboratories, Hertfordshire, UK
| | - C R Santos
- Translational Cancer Therapeutics, Cancer Research UK London Research Institute, London, UK
| | - A Lobley
- Bioinformatics and Biostatistics Laboratories, Cancer Research UK London Research Institute, London, UK
| | - P East
- Bioinformatics and Biostatistics Laboratories, Cancer Research UK London Research Institute, London, UK
| | - P Chakravarty
- Bioinformatics and Biostatistics Laboratories, Cancer Research UK London Research Institute, London, UK
| | - N Matthews
- Advanced Sequencing Facility, Cancer Research UK London Research Institute, London, UK
| | - G Kelly
- Bioinformatics and Biostatistics Laboratories, Cancer Research UK London Research Institute, London, UK
| | - S Jordan
- Signal Transduction, Cancer Research UK London Research Institute, London, UK
| | - E Castellano
- Signal Transduction, Cancer Research UK London Research Institute, London, UK
| | - J Downward
- Signal Transduction, Cancer Research UK London Research Institute, London, UK
- The Institute of Cancer Research, London, UK
| |
Collapse
|
3
|
Wallace BA, Lees JG, Orry AJW, Lobley A, Janes RW. Analyses of circular dichroism spectra of membrane proteins. Protein Sci 2003; 12:875-84. [PMID: 12649445 PMCID: PMC2323856 DOI: 10.1110/ps.0229603] [Citation(s) in RCA: 133] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2002] [Revised: 12/19/2002] [Accepted: 12/19/2002] [Indexed: 10/27/2022]
Abstract
Circular dichroism (CD) spectroscopy is a valuable technique for the determination of protein secondary structures. Many linear and nonlinear algorithms have been developed for the empirical analysis of CD data, using reference databases derived from proteins of known structures. To date, the reference databases used by the various algorithms have all been derived from the spectra of soluble proteins. When applied to the analysis of soluble protein spectra, these methods generally produce calculated secondary structures that correspond well with crystallographic structures. In this study, however, it was shown that when applied to membrane protein spectra, the resulting calculations produce considerably poorer results. One source of this discrepancy may be the altered spectral peak positions (wavelength shifts) of membrane proteins due to the different dielectric of the membrane environment relative to that of water. These results have important consequences for studies that seek to use the existing soluble protein reference databases for the analyses of membrane proteins.
Collapse
Affiliation(s)
- B A Wallace
- Department of Crystallography, Birkbeck College, University of London, London WC1E 7HX, UK.
| | | | | | | | | |
Collapse
|
4
|
Abstract
A user-friendly website for the analysis of protein secondary structures from Circular Dichroism (CD) and Synchrotron Radiation Circular Dichroism (SRCD) spectra has been created.
Collapse
Affiliation(s)
- A Lobley
- Department of Crystallography, Birkbeck College, University of London, London WC1E 7HX, UK
| | | | | |
Collapse
|