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Kravchenko TV, Paramonov AS, Kudzhaev AM, Efimova SS, Khorev AS, Kudryakova GK, Ivanov IA, Chistov AA, Baranova AA, Krasilnikov MS, Lapchinskaya OA, Tyurin AP, Ostroumova OS, Smirnov IV, Terekhov SS, Dontsova OA, Shenkarev ZO, Alferova VA, Korshun VA. Gausemycin Antibiotic Family Acts via Ca 2+-Dependent Membrane Targeting. J Nat Prod 2024. [PMID: 38362867 DOI: 10.1021/acs.jnatprod.3c00612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/17/2024]
Abstract
We report the molecular mechanism of action of gausemycins and the isolation of new members of the family, gausemycins C (1c), D (1d), E (1e), and F (1f), the minor components of the mixture. To elucidate the mechanism of action of gausemycins, we investigated the antimicrobial activity of the most active compounds, gausemycins A and B, in the presence of Ca2+, other metal ions, and phosphate. Gausemycins require a significantly higher Ca2+ concentration for maximum activity than daptomycin but lower than that required for malacidine and cadasides. Species-specific antimicrobial activity was found upon testing against a wide panel of Gram-positive bacteria. Membranoactivity of gausemycins was demonstrated upon their interactions with model lipid bilayers and micelles. The pore-forming ability was found to be dramatically dependent on the Ca2+ concentration and the membrane lipid composition. An NMR study of gausemycin B in zwitterionic and anionic micelles suggested the putative structure of the gausemycin/membrane complex and revealed the binding of Ca2+ by the macrocyclic domain of the antibiotic.
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Affiliation(s)
- Tatyana V Kravchenko
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia
| | - Alexander S Paramonov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Arsen M Kudzhaev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Svetlana S Efimova
- Institute of Cytology of the Russian Academy of Sciences, Tikhoretsky Prospect 4, 194064 St. Petersburg, Russia
| | - Alexey S Khorev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | | | - Igor A Ivanov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Alexey A Chistov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Anna A Baranova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Maxim S Krasilnikov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
- Department of Chemistry, Lomonosov Moscow State University, 1-3 Leninskie Gory, 119992 Moscow, Russia
| | - Olda A Lapchinskaya
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia
| | - Anton P Tyurin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Olga S Ostroumova
- Institute of Cytology of the Russian Academy of Sciences, Tikhoretsky Prospect 4, 194064 St. Petersburg, Russia
| | - Ivan V Smirnov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Stanislav S Terekhov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Olga A Dontsova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
- Department of Chemistry, Lomonosov Moscow State University, 1-3 Leninskie Gory, 119992 Moscow, Russia
| | - Zakhar O Shenkarev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Vera A Alferova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Vladimir A Korshun
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
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2
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Baranova AA, Tyurin AP, Korshun VA, Alferova VA. Sensing of Antibiotic-Bacteria Interactions. Antibiotics (Basel) 2023; 12:1340. [PMID: 37627760 PMCID: PMC10451291 DOI: 10.3390/antibiotics12081340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 08/15/2023] [Accepted: 08/17/2023] [Indexed: 08/27/2023] Open
Abstract
Sensing of antibiotic-bacteria interactions is an important area of research that has gained significant attention in recent years. Antibiotic resistance is a major public health concern, and it is essential to develop new strategies for detecting and monitoring bacterial responses to antibiotics in order to maintain effective antibiotic development and antibacterial treatment. This review summarizes recent advances in sensing strategies for antibiotic-bacteria interactions, which are divided into two main parts: studies on the mechanism of action for sensitive bacteria and interrogation of the defense mechanisms for resistant ones. In conclusion, this review provides an overview of the present research landscape concerning antibiotic-bacteria interactions, emphasizing the potential for method adaptation and the integration of machine learning techniques in data analysis, which could potentially lead to a transformative impact on mechanistic studies within the field.
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Affiliation(s)
| | | | | | - Vera A. Alferova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (A.A.B.); (A.P.T.); (V.A.K.)
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3
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Baranova AA, Alferova VA, Korshun VA, Tyurin AP. Modern Trends in Natural Antibiotic Discovery. Life (Basel) 2023; 13:life13051073. [PMID: 37240718 DOI: 10.3390/life13051073] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Revised: 04/10/2023] [Accepted: 04/21/2023] [Indexed: 05/28/2023] Open
Abstract
Natural scaffolds remain an important basis for drug development. Therefore, approaches to natural bioactive compound discovery attract significant attention. In this account, we summarize modern and emerging trends in the screening and identification of natural antibiotics. The methods are divided into three large groups: approaches based on microbiology, chemistry, and molecular biology. The scientific potential of the methods is illustrated with the most prominent and recent results.
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Affiliation(s)
- Anna A Baranova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, 119021 Moscow, Russia
| | - Vera A Alferova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, 119021 Moscow, Russia
| | - Vladimir A Korshun
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Anton P Tyurin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
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4
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Baranova AA, Zakalyukina YV, Ovcharenko AA, Korshun VA, Tyurin AP. Antibiotics from Insect-Associated Actinobacteria. Biology (Basel) 2022; 11:1676. [PMID: 36421390 PMCID: PMC9687666 DOI: 10.3390/biology11111676] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 11/13/2022] [Accepted: 11/16/2022] [Indexed: 11/10/2023]
Abstract
Actinobacteria are involved into multilateral relationships between insects, their food sources, infectious agents, etc. Antibiotics and related natural products play an essential role in such systems. The literature from the January 2016-August 2022 period devoted to insect-associated actinomycetes with antagonistic and/or enzyme-inhibiting activity was selected. Recent progress in multidisciplinary studies of insect-actinobacterial interactions mediated by antibiotics is summarized and discussed.
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Affiliation(s)
- Anna A. Baranova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
- Gause Institute of New Antibiotics, Bol’shaya Pirogovskaya 11, 119021 Moscow, Russia
| | - Yuliya V. Zakalyukina
- Department of Soil Science, Lomonosov Moscow State University, Leninskie Gory 1-12, 119991 Moscow, Russia
| | - Anna A. Ovcharenko
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
- Higher Chemical College RAS, Mendeleev University of Chemical Technology of Russia, Miusskaya sq. 9, 125047 Moscow, Russia
| | - Vladimir A. Korshun
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
| | - Anton P. Tyurin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia
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5
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Ikonnikova VA, Solyev PN, Terekhov SS, Alferova VA, Tyurin AP, Korshun VA, Baranov MS, Mikhaylov AA. Total Synthesis of Elmenols A and B and Related Rearranged Angucyclinones. ChemistrySelect 2021. [DOI: 10.1002/slct.202103755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Viktoria A. Ikonnikova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Higher Chemical College Mendeleev University of Chemical Technology of Russia 9 Miusskaya sq. 125047 Moscow Russia
| | - Pavel N. Solyev
- Engelhardt Institute of Molecular Biology of the Russian Academy of Sciences 32 Vavilova St. Moscow 119991 Russia
| | - Stanislav S. Terekhov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Department of Chemistry Lomonosov Moscow State University, 1-3 Leninskiye Gory Moscow 119991 Russia
| | - Vera A. Alferova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Gause Institute of New Antibiotics 11 B. Pirogovskaya Moscow 119021 Russia
| | - Anton P. Tyurin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Gause Institute of New Antibiotics 11 B. Pirogovskaya Moscow 119021 Russia
| | - Vladimir A. Korshun
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Gause Institute of New Antibiotics 11 B. Pirogovskaya Moscow 119021 Russia
| | - Mikhail S. Baranov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
| | - Andrey A. Mikhaylov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- National Research University Higher School of Economics Faculty of Chemistry 20 Myasnitskaya St. Moscow 101000 Russia
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6
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Tyurin AP, Alferova VA, Paramonov AS, Shuvalov MV, Kudryakova GK, Rogozhin EA, Zherebker AY, Brylev VA, Chistov AA, Baranova AA, Biryukov MV, Ivanov IA, Prokhorenko IA, Grammatikova NE, Kravchenko TV, Isakova EB, Mirchink EP, Gladkikh EG, Svirshchevskaya EV, Mardanov AV, Beletsky AV, Kocharovskaya MV, Kulyaeva VV, Shashkov AS, Tsvetkov DE, Nifantiev NE, Apt AS, Majorov KB, Efimova SS, Ravin NV, Nikolaev EN, Ostroumova OS, Katrukha GS, Lapchinskaya OA, Dontsova OA, Terekhov SS, Osterman IA, Shenkarev ZO, Korshun VA. Inside Cover: Gausemycins A,B: Cyclic Lipoglycopeptides from
Streptomyces
sp. (Angew. Chem. Int. Ed. 34/2021). Angew Chem Int Ed Engl 2021. [DOI: 10.1002/anie.202107693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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7
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Tyurin AP, Alferova VA, Paramonov AS, Shuvalov MV, Kudryakova GK, Rogozhin EA, Zherebker AY, Brylev VA, Chistov AA, Baranova AA, Biryukov MV, Ivanov IA, Prokhorenko IA, Grammatikova NE, Kravchenko TV, Isakova EB, Mirchink EP, Gladkikh EG, Svirshchevskaya EV, Mardanov AV, Beletsky AV, Kocharovskaya MV, Kulyaeva VV, Shashkov AS, Tsvetkov DE, Nifantiev NE, Apt AS, Majorov KB, Efimova SS, Ravin NV, Nikolaev EN, Ostroumova OS, Katrukha GS, Lapchinskaya OA, Dontsova OA, Terekhov SS, Osterman IA, Shenkarev ZO, Korshun VA. Gausemycins A,B: Cyclic Lipoglycopeptides from
Streptomyces
sp.**. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202104528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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8
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Abstract
Antiviral action of various photosensitizers is already summarized in several comprehensive reviews, and various mechanisms have been proposed for it. However, a critical consideration of the matter of the area is complicated, since the exact mechanisms are very difficult to explore and clarify, and most publications are of an empirical and "phenomenological" nature, reporting a dependence of the antiviral action on illumination, or a correlation of activity with the photophysical properties of the substances. Of particular interest is substance-assisted photogeneration of highly reactive singlet oxygen (1O2). The damaging action of 1O2 on the lipids of the viral envelope can probably lead to a loss of the ability of the lipid bilayer of enveloped viruses to fuse with the lipid membrane of the host cell. Thus, lipid bilayer-affine 1O2 photosensitizers have prospects as broad-spectrum antivirals against enveloped viruses. In this short review, we want to point out the main types of antiviral photosensitizers with potential affinity to the lipid bilayer and summarize the data on new compounds over the past three years. Further understanding of the data in the field will spur a targeted search for substances with antiviral activity against enveloped viruses among photosensitizers able to bind to the lipid membranes.
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Affiliation(s)
- Kseniya A. Mariewskaya
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (K.A.M.); (A.P.T.); (A.A.C.); (V.A.K.)
- Higher Chemical College of the Russian Academy of Sciences, Mendeleev University of Chemical Technology, Miusskaya sq. 9, 125047 Moscow, Russia
| | - Anton P. Tyurin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (K.A.M.); (A.P.T.); (A.A.C.); (V.A.K.)
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia
| | - Alexey A. Chistov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (K.A.M.); (A.P.T.); (A.A.C.); (V.A.K.)
| | - Vladimir A. Korshun
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (K.A.M.); (A.P.T.); (A.A.C.); (V.A.K.)
| | - Vera A. Alferova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (K.A.M.); (A.P.T.); (A.A.C.); (V.A.K.)
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia
| | - Alexey V. Ustinov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (K.A.M.); (A.P.T.); (A.A.C.); (V.A.K.)
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9
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Tyurin AP, Alferova VA, Paramonov AS, Shuvalov MV, Kudryakova GK, Rogozhin EA, Zherebker AY, Brylev VA, Chistov AA, Baranova AA, Biryukov MV, Ivanov IA, Prokhorenko IA, Grammatikova NE, Kravchenko TV, Isakova EB, Mirchink EP, Gladkikh EG, Svirshchevskaya EV, Mardanov AV, Beletsky AV, Kocharovskaya MV, Kulyaeva VV, Shashkov AS, Tsvetkov DE, Nifantiev NE, Apt AS, Majorov KB, Efimova SS, Ravin NV, Nikolaev EN, Ostroumova OS, Katrukha GS, Lapchinskaya OA, Dontsova OA, Terekhov SS, Osterman IA, Shenkarev ZO, Korshun VA. Gausemycins A,B: Cyclic Lipoglycopeptides from Streptomyces sp.*. Angew Chem Int Ed Engl 2021; 60:18694-18703. [PMID: 34009717 DOI: 10.1002/anie.202104528] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Indexed: 11/10/2022]
Abstract
We report a novel family of natural lipoglycopeptides produced by Streptomyces sp. INA-Ac-5812. Two major components of the mixture, named gausemycins A and B, were isolated, and their structures were elucidated. The compounds are cyclic peptides with a unique peptide core and several remarkable structural features, including unusual positions of d-amino acids, lack of the Ca2+ -binding Asp-X-Asp-Gly (DXDG) motif, tyrosine glycosylation with arabinose, presence of 2-amino-4-hydroxy-4-phenylbutyric acid (Ahpb) and chlorinated kynurenine (ClKyn), and N-acylation of the ornithine side chain. Gausemycins have pronounced activity against Gram-positive bacteria. Mechanistic studies highlight significant differences compared to known glyco- and lipopeptides. Gausemycins exhibit only slight Ca2+ -dependence of activity and induce no pore formation at low concentrations. Moreover, there is no detectable accumulation of cell wall biosynthesis precursors under treatment with gausemycins.
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Affiliation(s)
- Anton P Tyurin
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia
| | - Vera A Alferova
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia.,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Alexander S Paramonov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Maxim V Shuvalov
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia.,Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1-3, 119992, Moscow, Russia
| | | | - Eugene A Rogozhin
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia.,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Alexander Y Zherebker
- Skolkovo Institute of Science and Technology, Nobel Street 3, Skolkovo, 143026, Moscow Region, Russia
| | - Vladimir A Brylev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Alexey A Chistov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Anna A Baranova
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia.,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Mikhail V Biryukov
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia.,Department of Biology, Lomonosov Moscow State University, Leninskie Gory 1-3, 119992, Moscow, Russia
| | - Igor A Ivanov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Igor A Prokhorenko
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia.,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | | | - Tatyana V Kravchenko
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia.,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Elena B Isakova
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia
| | - Elena P Mirchink
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia
| | - Elena G Gladkikh
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia
| | - Elena V Svirshchevskaya
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
| | - Andrey V Mardanov
- Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Prospect 33-2, 119071, Moscow, Russia
| | - Aleksey V Beletsky
- Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Prospect 33-2, 119071, Moscow, Russia
| | - Milita V Kocharovskaya
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia.,Moscow Institute of Physics and Technology, Institutsky Lane 9, Dolgoprydny, 141700, Moscow region, Russia
| | - Valeriya V Kulyaeva
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia
| | - Alexander S Shashkov
- Zelinsky Institute of Organic Chemistry RAS, Leninsky Prospect 47, 119991, Moscow, Russia
| | - Dmitry E Tsvetkov
- Zelinsky Institute of Organic Chemistry RAS, Leninsky Prospect 47, 119991, Moscow, Russia
| | - Nikolay E Nifantiev
- Zelinsky Institute of Organic Chemistry RAS, Leninsky Prospect 47, 119991, Moscow, Russia
| | - Alexander S Apt
- Central Tuberculosis Research Institute, Yauzskaya Alley 2, 107564, Moscow, Russia
| | - Konstantin B Majorov
- Central Tuberculosis Research Institute, Yauzskaya Alley 2, 107564, Moscow, Russia
| | - Svetlana S Efimova
- Institute of Cytology RAS, Tikhoretsky Prospect 4, 194064, St. Petersburg, Russia
| | - Nikolai V Ravin
- Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Prospect 33-2, 119071, Moscow, Russia
| | - Evgeny N Nikolaev
- Skolkovo Institute of Science and Technology, Nobel Street 3, Skolkovo, 143026, Moscow Region, Russia
| | - Olga S Ostroumova
- Institute of Cytology RAS, Tikhoretsky Prospect 4, 194064, St. Petersburg, Russia
| | - Genrikh S Katrukha
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia
| | - Olda A Lapchinskaya
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia
| | - Olga A Dontsova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia.,Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1-3, 119992, Moscow, Russia.,Skolkovo Institute of Science and Technology, Nobel Street 3, Skolkovo, 143026, Moscow Region, Russia
| | - Stanislav S Terekhov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia.,Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1-3, 119992, Moscow, Russia
| | - Ilya A Osterman
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1-3, 119992, Moscow, Russia.,Skolkovo Institute of Science and Technology, Nobel Street 3, Skolkovo, 143026, Moscow Region, Russia
| | - Zakhar O Shenkarev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia.,Moscow Institute of Physics and Technology, Institutsky Lane 9, Dolgoprydny, 141700, Moscow region, Russia
| | - Vladimir A Korshun
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021, Moscow, Russia.,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997, Moscow, Russia
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10
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Tyurin AP, Alferova VA, Paramonov AS, Shuvalov MV, Kudryakova GK, Rogozhin EA, Zherebker AY, Brylev VA, Chistov AA, Baranova AA, Biryukov MV, Ivanov IA, Prokhorenko IA, Grammatikova NE, Kravchenko TV, Isakova EB, Mirchink EP, Gladkikh EG, Svirshchevskaya EV, Mardanov AV, Beletsky AV, Kocharovskaya MV, Kulyaeva VV, Shashkov AS, Tsvetkov DE, Nifantiev NE, Apt AS, Majorov KB, Efimova SS, Ravin NV, Nikolaev EN, Ostroumova OS, Katrukha GS, Lapchinskaya OA, Dontsova OA, Terekhov SS, Osterman IA, Shenkarev ZO, Korshun VA. Innentitelbild: Gausemycins A,B: Cyclic Lipoglycopeptides from
Streptomyces
sp. (Angew. Chem. 34/2021). Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202107693] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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11
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Baranova AA, Chistov AA, Shuvalov MV, Tyurin AP, Biryukov MV, Ivanov IA, Sadykova VS, Kurakov AV, Sergeeva AI, Korshun VA, Alferova VA. Identification of isocyclosporins by collision-induced dissociation of doubly protonated species. Talanta 2021; 225:121930. [PMID: 33592699 DOI: 10.1016/j.talanta.2020.121930] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Revised: 11/21/2020] [Accepted: 11/26/2020] [Indexed: 11/26/2022]
Abstract
Nonribosomal cyclopeptide cyclosporin A (CsA), produced by fungus Tolypocladium inflatum, is an extremely important immunosuppressive drug used in organ transplantations and for therapy of autoimmune diseases. Here we report for the first time production of CsA, along with related cyclosporins B and C, by Tolypocladium inflatum strains of marine origin (White Sea). Cyclosporins A-C contain an unusual amino acid, (4R)-4-((E)-2-butenyl)-4,N-dimethyl-l-threonine (MeBmt), and are prone to isomerization to non-active isocyclosporin by N→O acyl shift of valine connected to MeBmt in acidic conditions. CsA and isoCsA are not distinguishable in MS analysis of [M+H]+ ions due to rapid [CsA + H]+→[isoCsA + H]+ conversion. We found that the N→O acyl shift is completely suppressed in cyclosporine [M+2H]2+ ions, and their collision-induced dissociation (CID) can be used for rapid and unambiguous analysis of cyclosporins and isocylosporins. Fragmentation patterns of [CsA+2H]2+ and [isoCsA+2H]2+ ions were analyzed and explained. The developed approach could be useful for MS analysis of other peptides containing β-hydroxy-α-amino acids.
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Affiliation(s)
- Anna A Baranova
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, Moscow, 119021, Russia; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, Moscow, 117997, Russia
| | - Alexey A Chistov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, Moscow, 117997, Russia; Orekhovich Research Institute of Biomedical Chemistry, Pogodinskaya 10, Moscow, 119121, Russia
| | - Maxim V Shuvalov
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, Moscow, 119021, Russia; Lomonosov Moscow State University, 1 Leninskiye Gory, 119992, Moscow, Russia
| | - Anton P Tyurin
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, Moscow, 119021, Russia; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, Moscow, 117997, Russia
| | - Mikhail V Biryukov
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, Moscow, 119021, Russia; Lomonosov Moscow State University, 1 Leninskiye Gory, 119992, Moscow, Russia
| | - Igor A Ivanov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, Moscow, 117997, Russia
| | - Vera S Sadykova
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, Moscow, 119021, Russia
| | | | - Albina I Sergeeva
- Lomonosov Moscow State University, 1 Leninskiye Gory, 119992, Moscow, Russia
| | - Vladimir A Korshun
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, Moscow, 119021, Russia; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, Moscow, 117997, Russia.
| | - Vera A Alferova
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, Moscow, 119021, Russia; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, Moscow, 117997, Russia.
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12
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Baranova AA, Chistov AA, Tyurin AP, Prokhorenko IA, Korshun VA, Biryukov MV, Alferova VA, Zakalyukina YV. Chemical Ecology of Streptomyces albidoflavus Strain A10 Associated with Carpenter Ant Camponotus vagus. Microorganisms 2020; 8:microorganisms8121948. [PMID: 33316994 PMCID: PMC7763447 DOI: 10.3390/microorganisms8121948] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Revised: 12/03/2020] [Accepted: 12/07/2020] [Indexed: 12/22/2022] Open
Abstract
Antibiotics produced by symbiotic microorganisms were previously shown to be of crucial importance for ecological communities, including ants. Previous works on ant–actinobacteria symbiosis are mainly focused on farming ants, which use antifungal microbial secondary metabolites to control pathogens in their fungal gardens. In this work, we studied microorganisms associated with carpenter ant Camponotus vagus. Pronounced antifungal activity of isolated actinobacteria strain A10 was found to be facilitated by biosynthesis of the antimycin A complex, consisting of small hydrophobic depsipeptides with high antimicrobial and cytotoxic activity. The actinomycete strain A10 was identified as Streptomyces albidoflavus. We studied the antagonistic activity of strain A10 against several entomopathogenic microorganisms. The antifungal activity of this strain potentially indicates a defensive symbiosis with the host ant, producing antimycins to protect carpenter ants against infections. The nature of this ant-microbe association however remains to be established.
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Affiliation(s)
- Anna A. Baranova
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia; (A.A.B.); (A.P.T.); (I.A.P.); (V.A.K.); (M.V.B.)
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia;
| | - Alexey A. Chistov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia;
- Orekhovich Research Institute of Biomedical Chemistry, Pogodinskaya 10, 119121 Moscow, Russia
| | - Anton P. Tyurin
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia; (A.A.B.); (A.P.T.); (I.A.P.); (V.A.K.); (M.V.B.)
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia;
| | - Igor A. Prokhorenko
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia; (A.A.B.); (A.P.T.); (I.A.P.); (V.A.K.); (M.V.B.)
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia;
| | - Vladimir A. Korshun
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia; (A.A.B.); (A.P.T.); (I.A.P.); (V.A.K.); (M.V.B.)
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia;
| | - Mikhail V. Biryukov
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia; (A.A.B.); (A.P.T.); (I.A.P.); (V.A.K.); (M.V.B.)
- Department of Biology, Lomonosov Moscow State University, 119991 Moscow, Russia
| | - Vera A. Alferova
- Gause Institute of New Antibiotics, B. Pirogovskaya 11, 119021 Moscow, Russia; (A.A.B.); (A.P.T.); (I.A.P.); (V.A.K.); (M.V.B.)
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia;
- Correspondence: (V.A.A.); (Y.V.Z.); Tel.: +7-9266113649 (V.A.A.); +7-9175548004 (Y.V.Z.)
| | - Yuliya V. Zakalyukina
- Department of Soil Science, Lomonosov Moscow State University, 119991 Moscow, Russia
- Correspondence: (V.A.A.); (Y.V.Z.); Tel.: +7-9266113649 (V.A.A.); +7-9175548004 (Y.V.Z.)
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13
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Slesarchuk NA, Khvatov EV, Chistov AA, Proskurin GV, Nikitin TD, Lazarevich AI, Ulanovskaya AA, Ulashchik EA, Orlov AA, Jegorov AV, Ustinov AV, Tyurin AP, Shmanai VV, Ishmukhametov AA, Korshun VA, Osolodkin DI, Kozlovskaya LI, Aralov AV. Simplistic perylene-related compounds as inhibitors of tick-borne encephalitis virus reproduction. Bioorg Med Chem Lett 2020; 30:127100. [PMID: 32199731 DOI: 10.1016/j.bmcl.2020.127100] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2020] [Revised: 02/28/2020] [Accepted: 03/07/2020] [Indexed: 12/12/2022]
Abstract
Rigid amphipathic fusion inhibitors are potent broad-spectrum antivirals based on the perylene scaffold, usually decorated with a hydrophilic group linked via ethynyl or triazole. We have sequentially simplified these structures by removing sugar moiety, then converting uridine to aniline, then moving to perylenylthiophenecarboxylic acids and to perylenylcarboxylic acid. All these polyaromatic compounds, as well as antibiotic heliomycin, still showed pronounced activity against tick-borne encephalitis virus (TBEV) with limited toxicity in porcine embryo kidney (PEK) cell line. 5-(Perylen-3-yl)-2-thiophenecarboxylic acid (5a) showed the highest antiviral activity with 50% effective concentration of approx. 1.6 nM.
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Affiliation(s)
- Nikita A Slesarchuk
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia; Department of Biology and Biotechnology, National Research University Higher School of Economics, Moscow 117312, Russia
| | - Evgeny V Khvatov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; FSBSI «Chumakov FSC R&D IBP RAS», Moscow 108819, Russia
| | - Alexey A Chistov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; Department of Biology and Biotechnology, National Research University Higher School of Economics, Moscow 117312, Russia
| | - Gleb V Proskurin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia
| | - Timofei D Nikitin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Anastasiya I Lazarevich
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; Mendeleev University of Chemical Technology, Moscow 125047, Russia
| | - Angelina A Ulanovskaya
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; Mendeleev University of Chemical Technology, Moscow 125047, Russia
| | | | | | - Artjom V Jegorov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia
| | - Alexey V Ustinov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; Department of Biology and Biotechnology, National Research University Higher School of Economics, Moscow 117312, Russia.
| | - Anton P Tyurin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; Department of Biology and Biotechnology, National Research University Higher School of Economics, Moscow 117312, Russia; Gause Institute of New Antibiotics, Moscow 119021, Russia
| | - Vadim V Shmanai
- Institute of Physico-Organic Chemistry, Minsk 220072, Belarus
| | - Aydar A Ishmukhametov
- FSBSI «Chumakov FSC R&D IBP RAS», Moscow 108819, Russia; Institute of Translational Medicine and Biotechnology, Sechenov First Moscow State Medical University, Moscow 119991, Russia
| | - Vladimir A Korshun
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia; Department of Biology and Biotechnology, National Research University Higher School of Economics, Moscow 117312, Russia; Gause Institute of New Antibiotics, Moscow 119021, Russia
| | - Dmitry I Osolodkin
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia; FSBSI «Chumakov FSC R&D IBP RAS», Moscow 108819, Russia; Institute of Translational Medicine and Biotechnology, Sechenov First Moscow State Medical University, Moscow 119991, Russia.
| | - Liubov I Kozlovskaya
- FSBSI «Chumakov FSC R&D IBP RAS», Moscow 108819, Russia; Institute of Translational Medicine and Biotechnology, Sechenov First Moscow State Medical University, Moscow 119991, Russia
| | - Andrey V Aralov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow 117997, Russia
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14
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Alferova VA, Shuvalov MV, Novikov RA, Trenin AS, Dezhenkova LG, Gladkikh EG, Lapchinskaya OA, Kulyaeva VV, Bychkova OP, Mirchink EP, Solyev PN, Kudryakova GK, Korshun VA, Tyurin AP. Structure-activity studies of irumamycin type macrolides from Streptomyces sp. INA-Ac-5812. Tetrahedron Lett 2019. [DOI: 10.1016/j.tetlet.2019.04.051] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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15
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Alferova VA, Novikov RA, Bychkova OP, Rogozhin EA, Shuvalov MV, Prokhorenko IA, Sadykova VS, Kulko AB, Dezhenkova LG, Stepashkina EA, Efremov MA, Sineva ON, Kudryakova GK, Peregudov AS, Solyev PN, Tkachev YV, Fedorova GB, Terekhova LP, Tyurin AP, Trenin AS, Korshun VA. Astolides A and B, antifungal and cytotoxic naphthoquinone-derived polyol macrolactones from Streptomyces hygroscopicus. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.11.015] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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16
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Tyurin AP, Alferova VA, Korshun VA. Chemical Elicitors of Antibiotic Biosynthesis in Actinomycetes. Microorganisms 2018; 6:microorganisms6020052. [PMID: 29890642 PMCID: PMC6027282 DOI: 10.3390/microorganisms6020052] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Revised: 06/04/2018] [Accepted: 06/06/2018] [Indexed: 12/21/2022] Open
Abstract
Whole genome sequencing of actinomycetes has uncovered a new immense realm of microbial chemistry and biology. Most biosynthetic gene clusters present in genomes were found to remain “silent” under standard cultivation conditions. Some small molecules—chemical elicitors—can be used to induce the biosynthesis of antibiotics in actinobacteria and to expand the chemical diversity of secondary metabolites. Here, we outline a brief account of the basic principles of the search for regulators of this type and their application.
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Affiliation(s)
- Anton P Tyurin
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, 119021 Moscow, Russia.
| | - Vera A Alferova
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, 119021 Moscow, Russia.
| | - Vladimir A Korshun
- Gause Institute of New Antibiotics, Bolshaya Pirogovskaya 11, 119021 Moscow, Russia.
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997 Moscow, Russia.
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17
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Jiang ZK, Tuo L, Huang DL, Osterman IA, Tyurin AP, Liu SW, Lukyanov DA, Sergiev PV, Dontsova OA, Korshun VA, Li FN, Sun CH. Diversity, Novelty, and Antimicrobial Activity of Endophytic Actinobacteria From Mangrove Plants in Beilun Estuary National Nature Reserve of Guangxi, China. Front Microbiol 2018; 9:868. [PMID: 29780376 PMCID: PMC5945994 DOI: 10.3389/fmicb.2018.00868] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2017] [Accepted: 04/16/2018] [Indexed: 11/13/2022] Open
Abstract
Endophytic actinobacteria are one of the important pharmaceutical resources and well known for producing different types of bioactive substances. Nevertheless, detection of the novelty, diversity, and bioactivity on endophytic actinobacteria isolated from mangrove plants are scarce. In this study, five different mangrove plants, Avicennia marina, Aegiceras corniculatum, Kandelia obovota, Bruguiera gymnorrhiza, and Thespesia populnea, were collected from Beilun Estuary National Nature Reserve in Guangxi Zhuang Autonomous Region, China. A total of 101 endophytic actinobacteria strains were recovered by culture-based approaches. They distributed in 7 orders, 15 families, and 28 genera including Streptomyces, Curtobacterium, Mycobacterium, Micrococcus, Brevibacterium, Kocuria, Nocardioides, Kineococcus, Kytococcus, Marmoricola, Microbacterium, Micromonospora, Actinoplanes, Agrococcus, Amnibacterium, Brachybacterium, Citricoccus, Dermacoccus, Glutamicibacter, Gordonia, Isoptericola, Janibacter, Leucobacter, Nocardia, Nocardiopsis, Pseudokineococcus, Sanguibacter, and Verrucosispora. Among them, seven strains were potentially new species of genera Nocardioides, Streptomyces, Amnibacterium, Marmoricola, and Mycobacterium. Above all, strain 8BXZ-J1 has already been characterized as a new species of the genus Marmoricola. A total of 63 out of 101 strains were chosen to screen antibacterial activities by paper-disk diffusion method and inhibitors of ribosome and DNA biosynthesis by means of a double fluorescent protein reporter. A total of 31 strains exhibited positive results in at least one antibacterial assay. Notably, strain 8BXZ-J1 and three other potential novel species, 7BMP-1, 5BQP-J3, and 1BXZ-J1, all showed antibacterial bioactivity. In addition, 21 strains showed inhibitory activities against at least one "ESKAPE" resistant pathogens. We also found that Streptomyces strains 2BBP-J2 and 1BBP-1 produce bioactive compound with inhibitory activity on protein biosynthesis as result of translation stalling. Meanwhile, Streptomyces strain 3BQP-1 produces bioactive compound inducing SOS-response due to DNA damage. In conclusion, this study proved mangrove plants harbored a high diversity of cultivable endophytic actinobacteria, which can be a promising source for discovery of novel species and bioactive compounds.
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Affiliation(s)
- Zhong-ke Jiang
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Li Tuo
- Research Center for Medicine and Biology, Zunyi Medical University, Zunyi, China
| | - Da-lin Huang
- College of Basic Medical Sciences, Guilin Medical University, Guilin, China
| | - Ilya A. Osterman
- Department of Chemistry, A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia
- Skolkovo Institute of Science and Technology, Moscow, Russia
| | - Anton P. Tyurin
- Gause Institute of New Antibiotics, Moscow, Russia
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia
| | - Shao-wei Liu
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Dmitry A. Lukyanov
- Department of Chemistry, A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia
| | - Petr V. Sergiev
- Department of Chemistry, A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia
- Skolkovo Institute of Science and Technology, Moscow, Russia
| | - Olga A. Dontsova
- Department of Chemistry, A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia
- Skolkovo Institute of Science and Technology, Moscow, Russia
| | - Vladimir A. Korshun
- Gause Institute of New Antibiotics, Moscow, Russia
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia
| | - Fei-na Li
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Cheng-hang Sun
- Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
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18
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Tyurin AP, Alferova VA, Paramonov AS, Shuvalov MV, Malanicheva IA, Grammatikova NE, Solyev PN, Liu S, Sun C, Prokhorenko IA, Efimenko TA, Terekhova LP, Efremenkova OV, Shenkarev ZO, Korshun VA. Crystallomycin revisited after 60 years: aspartocins B and C. Medchemcomm 2018; 9:667-675. [PMID: 30108957 PMCID: PMC6071864 DOI: 10.1039/c8md00002f] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Accepted: 02/25/2018] [Indexed: 11/21/2022]
Abstract
The study of an archived sample of crystallomycin complex using HPLC, ESI HRMS, and 2D NMR showed that two major components of the antibiotic, compounds 1 and 2, are lipopeptides having the same peptide core, Asp1-cyclo(Dab2-Pip3-MeAsp4-Asp5-Gly6-Asp7-Gly8-Dab9-Val10-Pro11-), N-acylated either with Δ3-iso-tetradecenoyl or Δ3-anteiso-pentadecenoyl that are identical to aspartocins C and B, respectively. According to the 2D NMR study, compound 2 in DMSO solution exists as a mixture of four conformers. The producing strain was identified as Streptomyces griseorubens. Compounds 1 and 2 have considerable Ca2+-dependent activity against Gram-positive bacteria including five MRSA strains.
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Affiliation(s)
- Anton P Tyurin
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry , Miklukho-Maklaya 16/10 , Moscow 117997 , Russia .
| | - Vera A Alferova
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
| | - Alexander S Paramonov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry , Miklukho-Maklaya 16/10 , Moscow 117997 , Russia .
| | - Maxim V Shuvalov
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
- Department of Chemistry , Lomonosov Moscow State University , 1-3 Leninskie Gory , Moscow 119992 , Russia
| | - Irina A Malanicheva
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
| | | | - Pavel N Solyev
- Engelhardt Institute of Molecular Biology , Vavilova 32 , Moscow 119991 , Russia
| | - Shaowei Liu
- Institute of Medicinal Biotechnology , Chinese Academy of Medical Sciences & Peking Union Medical College , Tian Tan Xi Li 1 , Beijing 100050 , China
| | - Chenghang Sun
- Institute of Medicinal Biotechnology , Chinese Academy of Medical Sciences & Peking Union Medical College , Tian Tan Xi Li 1 , Beijing 100050 , China
| | - Igor A Prokhorenko
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry , Miklukho-Maklaya 16/10 , Moscow 117997 , Russia .
| | - Tatyana A Efimenko
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
| | - Larisa P Terekhova
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
| | - Olga V Efremenkova
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
| | - Zakhar O Shenkarev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry , Miklukho-Maklaya 16/10 , Moscow 117997 , Russia .
- Moscow Institute of Physics and Technology , Institutsky lane 9, Dolgoprydny , Moscow region 141700 , Russia
| | - Vladimir A Korshun
- Gause Institute of New Antibiotics , B. Pirogovskaya 11 , Moscow 119021 , Russia .
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry , Miklukho-Maklaya 16/10 , Moscow 117997 , Russia .
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