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Bongurala AR, Fatima A, Kashyap R. Rare Case of Double Esophageal Web in a Two-Year-Old. Cureus 2024; 16:e57784. [PMID: 38590975 PMCID: PMC10999376 DOI: 10.7759/cureus.57784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 04/07/2024] [Indexed: 04/10/2024] Open
Abstract
Congenital esophageal stenosis (CES) is an uncommon condition that poses diagnostic and therapeutic challenges due to its rarity and clinical presentation similar to other esophageal disorders. Symptoms typically start with dysphagia around the introduction of solid foods. A broad range of potential differential diagnoses contributes to a delay in obtaining a definitive diagnosis and administering the proper treatment. We report a two-year-old boy who presented with difficulty swallowing solid foods since 11 months of age, manifesting as choking and gagging. Initial evaluation revealed a double esophageal web, with proximal stenosis detected in an esophagram. Despite two endoscopic dilations and cauterization of the proximal web, a second web in the middle third of the esophagus was found. Subsequent dilatation successfully improved symptoms, and the child began tolerating table foods. This case report aims to contribute to the limited existing literature on CES and to add to the clinical practice in the diagnosis and treatment of this uncommon congenital anomaly.
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Affiliation(s)
| | | | - Rahul Kashyap
- Medicine, Drexel University College of Medicine, Philadelphia, USA
- Global Clinical Scholars Research Training (GCSRT), Harvard Medical School, Boston, USA
- Research, Global Remote Research Program, St Paul, USA
- Critical Care Medicine, Mayo Clinic, Rochester, USA
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Kumar M, Harvey RN, Osei SK, Fatima A, Menning AZ, Akay B, Brahmamdam P, Stallion A, Novotny NM. The Evolving Effectiveness of Biologics in Avoiding Surgery in Children With Ulcerative Colitis: At what Nutritional Cost? Am Surg 2023; 89:5584-5591. [PMID: 36869696 DOI: 10.1177/00031348231161701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
Abstract
BACKGROUND Pediatric ulcerative colitis (UC) treatment has changed dramatically with the introduction of multiple biologics. The goal of this study was to determine the effectiveness of these new biologics on achieving remission, nutritional impact, and eventual need for surgery in children. METHODS We retrospectively analyzed hospital records of UC patients (ages 1-19) seen at a pediatric gastroenterology clinic between January 2012 andAugust 2020. Patients were divided into groups: 1) medically without biologics or surgery; 2) patients treated with one biologic; and 3) patients treated with multiple biologics 4)patients that underwent colectomy. RESULTS There were 115 UC patients with a mean follow-up of 5.9 ± 3.7 years (1 month-15.3 years). PUCAI score at diagnosis was mild in 52 patients (45%), moderate in 25 (21%), and severe in 5 (4.3%). PUCAI score for 33 patients (29%) could not be calculated. There were 48 (41.3%) in group 1 with 58% remission, 34 (29.6%) in group 2 with 71% remission, 24 (20.8%) in group 3 with 29% remission, and only 9 (7.8%) in group 4 with 100% remission. The majority (55%) of surgical patients had colectomy within the first year of diagnosis. BMI improved after surgery (P = 0.001). The change from one biologic to others did not improve nutrition over time. DISCUSSION New biologics are changing the landscape in maintaining remission from UC. The current need for surgery is much lower than previously published studies. In medically refractive UC, nutritional status only improved after surgery. Addition of another biologic for medically refractory ulcerative colitis in order to avoid surgery must take into account the positive impact surgery has on nutrition and disease remission.
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Affiliation(s)
- Mohineesh Kumar
- Department of Surgery, Corewell Health William Beaumont University Hospital, Royal Oak, MI, USA
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
| | - Rachel N Harvey
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
| | - Samuel K Osei
- Department of Surgery, Corewell Health William Beaumont University Hospital, Royal Oak, MI, USA
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
| | - Ayesha Fatima
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
- Section of Pediatric Gastroenterology, Corewell Health William Beaumont University Hospital, Royal Oak, MI, USA
| | - Alexander Z Menning
- Department of Surgery, Corewell Health William Beaumont University Hospital, Royal Oak, MI, USA
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
| | - Begum Akay
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
- Section of Pediatric Surgery, Corewell Health William Beaumont University Hospital, Royal Oak, MI, USA
| | - Pavan Brahmamdam
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
- Section of Pediatric Surgery, Corewell Health William Beaumont University Hospital, Royal Oak, MI, USA
| | - Anthony Stallion
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
- Section of Pediatric Surgery, Corewell Health William Beaumont University Hospital, Royal Oak, MI, USA
| | - Nathan M Novotny
- Oakland University William Beaumont School of Medicine, Oakland, MI, USA
- Section of Pediatric Surgery, Corewell Health William Beaumont University Hospital, Royal Oak, MI, USA
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Mahmoudi Azar L, Öncel MM, Karaman E, Soysal LF, Fatima A, Choi SB, Eyupoglu AE, Erman B, Khan AM, Uysal S. Human ACE2 orthologous peptide sequences show better binding affinity to SARS-CoV-2 RBD domain: Implications for drug design. Comput Struct Biotechnol J 2023; 21:4096-4109. [PMID: 37671240 PMCID: PMC10475354 DOI: 10.1016/j.csbj.2023.07.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 07/17/2023] [Accepted: 07/19/2023] [Indexed: 09/07/2023] Open
Abstract
Computational methods coupled with experimental validation play a critical role in the identification of novel inhibitory peptides that interact with viral antigenic determinants. The interaction between the receptor binding domain (RBD) of SARS-CoV-2 spike protein and the helical peptide of human angiotensin-converting enzyme-2 (ACE2) is a necessity for the initiation of viral infection. Herein, natural orthologs of human ACE2 helical peptide were evaluated for competitive inhibitory binding to the viral RBD by use of a computational approach, which was experimentally validated. A total of 624 natural ACE2 orthologous 32-amino acid long peptides were identified through a similarity search. Molecular docking was used to virtually screen and rank the peptides based on binding affinity metrics, benchmarked against human ACE2 peptide docked to the RBD. Molecular dynamics (MD) simulations were done for the human reference and the Nipponia nippon peptide as it exhibited the highest binding affinity (Gibbs free energy; -14 kcal/mol) predicted from the docking results. The MD simulation confirmed the stability of the assessed peptide in the complex (-12.3 kcal/mol). The top three docked-peptides (from Chitinophaga sancti, Nipponia nippon, and Mus musculus) and the human reference were experimentally validated by use of surface plasmon resonance technology. The human reference exhibited the weakest binding affinity (Kd of 318-441 pM) among the peptides tested, in agreement with the docking prediction, while the peptide from Nipponia nippon was the best, with 267-538-fold higher affinity than the reference. The validated peptides merit further investigation. This work showcases that the approach herein can aid in the identification of inhibitory biosimilar peptides for other viruses.
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Affiliation(s)
- Lena Mahmoudi Azar
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul 34820, Turkiye
| | - Muhammed Miran Öncel
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul 34820, Turkiye
| | - Elif Karaman
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul 34820, Turkiye
- Department of Biotechnology, Institute of Health Sciences, Bezmialem Vakif University, Istanbul 34093, Turkiye
| | - Levent Faruk Soysal
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul 34820, Turkiye
| | - Ayesha Fatima
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul 34820, Turkiye
| | - Sy Bing Choi
- Centre for Bioinformatics, School of Data Sciences, Perdana University, Kuala Lumpur 50490, Malaysia
| | - Alp Ertunga Eyupoglu
- Department of Molecular Biology and Genetics, Faculty of Arts and Sciences, Bogazici University, Istanbul 34450 Turkiye
| | - Batu Erman
- Department of Molecular Biology and Genetics, Faculty of Arts and Sciences, Bogazici University, Istanbul 34450 Turkiye
| | - Asif M. Khan
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul 34820, Turkiye
- Centre for Bioinformatics, School of Data Sciences, Perdana University, Kuala Lumpur 50490, Malaysia
| | - Serdar Uysal
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul 34820, Turkiye
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Othman MA, Fadel R, Tayem Y, Jaradat A, Rashid A, Fatima A, Al-Mahameed AE, Nasr El-Din WA. Caffeine protects against hippocampal alterations in type 2 diabetic rats via modulation of gliosis, inflammation and apoptosis. Cell Tissue Res 2022; 392:443-466. [PMID: 36577880 DOI: 10.1007/s00441-022-03735-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Accepted: 12/21/2022] [Indexed: 12/30/2022]
Abstract
Type 2 diabetes (T2D) is implicated in the injury of several organs, including the brain resulting in neuronal damage, which may lead to cognitive impairment and dementia. Additionally, it is linked to inflammation, cytokine release, apoptosis and various degenerative conditions. Astrocytes and microglia might have a role in mediating these processes. Caffeine, a psychoactive beverage, has been shown to reduce the risk of cognitive and memory impairment. This study proposes anti-inflammatory and anti-apoptotic role of caffeine, which can be mediated via microglia/astrocyte activation and overexpression of pro-inflammatory molecules. T2D was induced in rats by feeding with high fat high sugar diet and injecting a single low dose streptozotocin (STZ) intraperitoneally. Other diabetic rats were given caffeine orally (in two doses) for 5 weeks, starting 1 week before STZ injection. Measurement of plasma cytokines, TNFα and IL6, was performed using enzyme-linked immunosorbent assay (ELISA) technique. After sacrificing animals, brains were obtained and processed for histological evaluation. Immunohistochemistry was also performed using the following primary antibodies, anti-astrocyte marker GFAP, anti-microglia marker CD11b and apoptotic marker (anti-cleaved caspase-3). There was upregulation of IL6 and TNF-α in diabetic rats. Additionally, histological evaluation of the hippocampus of diabetic rats revealed cellular degeneration. There was increased immunostaining of GFAP, CD11b and cleaved caspase-3 in diabetic rats. Pretreatment with caffeine to diabetic rats, resulted in improvement of structural changes and decrease in cytokine levels and immuno-markers, expression, and this was in a dose-dependent manner. In conclusion, caffeine had an ameliorative role in enhancing hippocampal degenerative changes in T2D.
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Affiliation(s)
- Manal A Othman
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, P.O. Box 26671, Manama, Bahrain
- Department of Histology and Cell Biology, Faculty of Medicine, Assiut University, Assiut, Egypt
| | - Raouf Fadel
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, P.O. Box 26671, Manama, Bahrain
- Department of Human Anatomy and Embryology, Faculty of Medicine, Suez Canal University, Ismailia, Egypt
| | - Yasin Tayem
- Department of Pharmacology, College of Medicine and Medical Sciences, Arabian Gulf University, Manama, Bahrain
| | - Ahmed Jaradat
- Department of Family and Community Medicine, College of Medicine and Medical Sciences, Arabian Gulf University, Manama, Bahrain
| | - Aisha Rashid
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, P.O. Box 26671, Manama, Bahrain
| | - Ayesha Fatima
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, P.O. Box 26671, Manama, Bahrain
| | - Ali E Al-Mahameed
- Department of Microbiology, Immunology & Infectious Diseases, College of Medicine and Medical Sciences, Arabian Gulf University, Manama, Bahrain
| | - Wael Amin Nasr El-Din
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, P.O. Box 26671, Manama, Bahrain.
- Department of Human Anatomy and Embryology, Faculty of Medicine, Suez Canal University, Ismailia, Egypt.
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Fatima A, Kanth SS, Sireesha B. Computational, Equilibrium, Structural, and Biological Study of the Novel 1-Formyl-4-phenyl-3-semicarbazide and Its Complexes. RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s1070363222120210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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6
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Rehan S, Asad A, Usman L, Fatima A, Hussain H, Nashwan A. Association of socioeconomic status and education with cerebral stroke – Are the poor nations at higher risk of cerebrovascular accidents? Ethics, Medicine and Public Health 2022; 25:100855. [DOI: 10.1016/j.jemep.2022.100855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/11/2023]
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7
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Fatima A. Factors affecting Quality of Life among breast cancer survivors. Eur J Cancer 2022. [DOI: 10.1016/s0959-8049(22)01373-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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8
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Fatima A. Finding patient-reported deterrents to adjunct Breast Cancer screening among patients with dense breast tissues. A cross sectional study in Pakistan. Eur J Cancer 2022. [DOI: 10.1016/s0959-8049(22)01464-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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9
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Jubair N, R. M, Fatima A, Mahdi YK, Abdullah NH. Evaluation of Catechin Synergistic and Antibacterial Efficacy on Biofilm Formation and acrA Gene Expression of Uropathogenic E. coli Clinical Isolates. Antibiotics (Basel) 2022; 11:antibiotics11091223. [PMID: 36140002 PMCID: PMC9495025 DOI: 10.3390/antibiotics11091223] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 08/29/2022] [Accepted: 08/29/2022] [Indexed: 11/16/2022] Open
Abstract
Uropathogenic Escherichia coli has a propensity to build biofilms to resist host defense and antimicrobials. Recurrent urinary tract infection (UTI) caused by multidrug-resistant, biofilm-forming E. coli is a significant public health problem. Consequently, searching for alternative medications has become essential. This study was undertaken to investigate the antibacterial, synergistic, and antibiofilm activities of catechin isolated from Canarium patentinervium Miq. against three E. coli ATCC reference strains (ATCC 25922, ATCC 8739, and ATCC 43895) and fifteen clinical isolates collected from UTI patients in Baghdad, Iraq. In addition, the expression of the biofilm-related gene, acrA, was evaluated with and without catechin treatment. Molecular docking was performed to evaluate the binding mode between catechin and the target protein using Autodock Vina 1.2.0 software. Catechin demonstrated significant bactericidal activity with a minimum inhibitory concentration (MIC) range of 1–2 mg/mL and a minimum bactericidal concentration (MBC) range of 2–4 mg/mL and strong synergy when combined with tetracycline at the MBC value. In addition, catechin substantially reduced E. coli biofilm by downregulating the acrA gene with a reduction percent ≥ 60%. In silico analysis revealed that catechin bound with high affinity (∆G = −8.2 kcal/mol) to AcrB protein (PDB-ID: 5ENT), one of the key AcrAB-TolC efflux pump proteins suggesting that catechin might inhibit the acrA gene indirectly by docking at the active site of AcrB protein.
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Affiliation(s)
- Najwan Jubair
- Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur 56000, Malaysia
- Correspondence: (N.J.); (M.R.)
| | - Mogana R.
- Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur 56000, Malaysia
- Correspondence: (N.J.); (M.R.)
| | - Ayesha Fatima
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, 34820 Istanbul, Turkey
| | - Yasir K. Mahdi
- Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur 56000, Malaysia
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Fatima A, Arif Khan M, Aslam S, Ashraf K, Khalid Mahmood A, Asif M, Shah S, Hussain N. Comparative evaluation of different techniques for herniorrhaphy in calves. Pol J Vet Sci 2022; 25:207-212. [PMID: 35861963 DOI: 10.24425/pjvs.2022.141804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Umbilical hernia is one of the most common problems in young calves. This problem occurs in dairy sector as well as in the local farmers. Present study was conducted to compare outcomes of four different techniques of herniorrhaphy. Twenty four young calves (n=24) were divided in 4 groups (A, B, C, and D) which underwent four different surgical techniques. Group A underwent vicryl plus suture material and pants-over-west technique, Group B underwent mesh application with Dexon suture material by using simple interrupted suture pattern, Group C underwent closed method with Nylon No. 3 suture material by using vertical mattress suture pattern and Group D underwent clamp application method with Silk No. 2 suture material by using simple interrupted suture pattern. The result showed that mesh application method was comparatively better with respect to feed intake, body weight gain and healing time. There was no reoccurrence with non-significant hematological changes (p≤0.05). It is concluded that mesh application method is safer than other three techniques and there are no systemic effects of this surgical intervention on calves' health.
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Affiliation(s)
- A Fatima
- Department of Veterinary Surgery and Pet Sciences, University of Veterinary and Animal Sciences, Out fall road 54000, Lahore-Pakistan
| | - M Arif Khan
- Department of Veterinary Surgery and Pet Sciences, University of Veterinary and Animal Sciences, Out fall road 54000, Lahore-Pakistan
| | - S Aslam
- Department of Veterinary Surgery and Pet Sciences, University of Veterinary and Animal Sciences, Out fall road 54000, Lahore-Pakistan
| | - K Ashraf
- Department of Parasitology, University of Veterinary and Animal Sciences, Out fall road 54000, Lahore-Pakistan
| | - A Khalid Mahmood
- Department of Veterinary Surgery and Pet Sciences, University of Veterinary and Animal Sciences, Out fall road 54000, Lahore-Pakistan
| | - M Asif
- Department of Veterinary Surgery and Pet Sciences, University of Veterinary and Animal Sciences, Out fall road 54000, Lahore-Pakistan
| | - S Shah
- Department of Veterinary Surgery and Pet Sciences, University of Veterinary and Animal Sciences, Out fall road 54000, Lahore-Pakistan
| | - N Hussain
- Department of Veterinary Surgery and Pet Sciences, University of Veterinary and Animal Sciences, Out fall road 54000, Lahore-Pakistan
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Zulkipli M, Mahbub N, Fatima A, Wan-Lin SL, Khoo TJ, Mahboob T, Rajagopal M, Samudi C, Kathirvalu G, Abdullah NH, Pinho AR, Oliveira SMR, Pereira MDL, Rahmatullah M, Hasan A, Paul AK, Butler MS, Nawaz M, Wilairatana P, Nissapatorn V, Wiart C. Isolation and Characterization of Werneria Chromene and Dihydroxyacidissimol from Burkillanthus malaccensis (Ridl.) Swingle. Plants (Basel) 2022; 11:1388. [PMID: 35684161 PMCID: PMC9182682 DOI: 10.3390/plants11111388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 05/16/2022] [Accepted: 05/17/2022] [Indexed: 06/15/2023]
Abstract
The secondary metabolites of endemic plants from the Rutaceae family, such as Burkillanthusmalaccensis (Ridl.) Swingle from the rainforest of Malaysia, has not been studied. Burkillanthusmalaccensis (Ridl.) Swingle may produce antibacterial and antibiotic-potentiating secondary metabolites. Hexane, chloroform, and methanol extracts of leaves, bark, wood, pericarps, and endocarps were tested against bacteria by broth microdilution assay and their antibiotic-potentiating activities. Chromatographic separations of hexane extracts of seeds were conducted to investigate effective phytochemicals and their antibacterial activities. Molecular docking studies of werneria chromene and dihydroxyacidissiminol against SARS-CoV-2 virus infection were conducted using AutoDock Vina. The methanol extract of bark inhibited the growth of Staphylococcusaureus, Escherichiacoli, and Pseudomonasaeruginosa with the minimum inhibitory concentration of 250, 500, and 250 µg/mL, respectively. The chloroform extract of endocarps potentiated the activity of imipenem against imipenem-resistant Acinetobacterbaumannii. The hexane extract of seeds increased the sensitivity of P. aeruginosa against ciprofloxacin and levofloxacin. The hexane extract of seeds and chloroform extract of endocarps were chromatographed, yielding werneria chromene and dihydroxyacidissiminol. Werneria chromene was bacteriostatic for P.aeruginosa and P.putida, with MIC/MBC values of 1000 > 1000 µg/mL. Dihydroxyacidissiminol showed the predicted binding energies of −8.1, −7.6, −7.0, and −7.5 kcal/mol with cathepsin L, nsp13 helicase, SARS-CoV-2 main protease, and SARS-CoV-2 spike protein receptor-binding domain S-RBD. Burkillanthusmalaccensis (Ridl.) Swingle can be a potential source of natural products with antibiotic-potentiating activity and that are anti-SARS-CoV-2.
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Affiliation(s)
- Masyitah Zulkipli
- School of Pharmacy, University of Nottingham Malaysia Campus, Semenyih 43500, Malaysia; (M.Z.); (N.M.); (S.L.W.-L.); (T.-J.K.)
| | - Nuzum Mahbub
- School of Pharmacy, University of Nottingham Malaysia Campus, Semenyih 43500, Malaysia; (M.Z.); (N.M.); (S.L.W.-L.); (T.-J.K.)
| | - Ayesha Fatima
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul 34093, Turkey;
| | - Stefanie Lim Wan-Lin
- School of Pharmacy, University of Nottingham Malaysia Campus, Semenyih 43500, Malaysia; (M.Z.); (N.M.); (S.L.W.-L.); (T.-J.K.)
| | - Teng-Jin Khoo
- School of Pharmacy, University of Nottingham Malaysia Campus, Semenyih 43500, Malaysia; (M.Z.); (N.M.); (S.L.W.-L.); (T.-J.K.)
| | - Tooba Mahboob
- Department of Medical Microbiology, University of Malaya, Kuala Lumpur 50603, Malaysia; (T.M.); (C.S.); (G.K.)
| | - Mogana Rajagopal
- Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur 56000, Malaysia;
| | - Chandramathi Samudi
- Department of Medical Microbiology, University of Malaya, Kuala Lumpur 50603, Malaysia; (T.M.); (C.S.); (G.K.)
| | - Gheetanjali Kathirvalu
- Department of Medical Microbiology, University of Malaya, Kuala Lumpur 50603, Malaysia; (T.M.); (C.S.); (G.K.)
| | - Nor Hayati Abdullah
- Natural Product Division, Forest Research Institute Malaysia (FRIM), Kepong 52109, Malaysia;
| | - Ana Rita Pinho
- Department of Medical Sciences, University of Aveiro, 3810-193 Aveiro, Portugal; (A.R.P.); (M.d.L.P.)
- Neuroscience and Signaling Laboratory, Institute of Biomedicine-IBIMED, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Sonia M. R. Oliveira
- CICECO-Aveiro Institute of Materials, University of Aveiro, 3810-193 Aveiro, Portugal;
- Hunter Medical Research Institute (HMRI), New Lambton Heights, NSW 2305, Australia
| | - Maria de Lourdes Pereira
- Department of Medical Sciences, University of Aveiro, 3810-193 Aveiro, Portugal; (A.R.P.); (M.d.L.P.)
- CICECO-Aveiro Institute of Materials, University of Aveiro, 3810-193 Aveiro, Portugal;
| | - Mohammed Rahmatullah
- Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka 1207, Bangladesh; (M.R.); (A.H.)
| | - Anamul Hasan
- Department of Biotechnology & Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka 1207, Bangladesh; (M.R.); (A.H.)
| | - Alok K. Paul
- School of Pharmacy and Pharmacology, University of Tasmania, Hobart, TAS 7001, Australia;
| | - Mark S. Butler
- Institute for Molecular Bioscience, University of Queensland, Brisbane, QLD 4072, Australia;
| | - Muhammad Nawaz
- Department of Nano-Medicine, Institute for Research and Medical Consultations (IRM), Imam Abdulrahman Bin Faisal University, Dammam 34212, Saudi Arabia;
| | - Polrat Wilairatana
- Department of Clinical Tropical Medicine, Faculty of Tropical Medicine, Mahidol University, Bangkok 10400, Thailand
| | - Veeranoot Nissapatorn
- School of Allied Health Sciences, World Union for Herbal Drug Discovery (WUHeDD), Research Excellence Center for Innovation and Health Products (RECIHP), Walailak University, Nakhon Si Thammarat 80160, Thailand
| | - Christophe Wiart
- Institute for Tropical Biology and Conservation, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu 88400, Malaysia
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Cuscino N, Fatima A, Di Pilato V, Bulati M, Alfano C, Monaca E, Di Mento G, Di Carlo D, Cardinale F, Monaco F, Rossolini GM, Khan AM, Conaldi PG, Douradinha B. Computational design and characterization of a multiepitope vaccine against carbapenemase-producing Klebsiella pneumoniae strains, derived from antigens identified through reverse vaccinology. Comput Struct Biotechnol J 2022; 20:4446-4463. [PMID: 36051872 PMCID: PMC9418682 DOI: 10.1016/j.csbj.2022.08.035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Revised: 08/15/2022] [Accepted: 08/15/2022] [Indexed: 11/10/2022] Open
Abstract
Klebsiella pneumoniae is a Gram-negative pathogen of clinical relevance, which can provoke serious urinary and blood infections and pneumonia. This bacterium is a major public health threat due to its resistance to several antibiotic classes. Using a reverse vaccinology approach, 7 potential antigens were identified, of which 4 were present in most of the sequences of Italian carbapenem-resistant K. pneumoniae clinical isolates. Bioinformatics tools demonstrated the antigenic potential of these bacterial proteins and allowed for the identification of T and B cell epitopes. This led to a rational design and in silico characterization of a multiepitope vaccine against carbapenem-resistant K. pneumoniae strains. As adjuvant, the mycobacterial heparin-binding hemagglutinin adhesin (HBHA), which is a Toll-like receptor 4 (TLR-4) agonist, was included, to increase the immunogenicity of the construct. The multiepitope vaccine candidate was analyzed by bioinformatics tools to assess its antigenicity, solubility, allergenicity, toxicity, physical and chemical parameters, and secondary and tertiary structures. Molecular docking binding energies to TLR-2 and TLR-4, two important innate immunity receptors involved in the immune response against K. pneumoniae infections, and molecular dynamics simulations of such complexes supported active interactions. A codon optimized multiepitope sequence cloning strategy is proposed, for production of recombinant vaccine in classical bacterial vectors. Finally, a 3 dose-immunization simulation with the multiepitope construct induced both cellular and humoral immune responses. These results suggest that this multiepitope construct has potential as a vaccination strategy against carbapenem-resistant K. pneumoniae and deserves further validation.
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Yousaf HS, Abbas M, Ghani N, Chaudhary H, Fatima A, Ahmad Z, Yasin SA. A comparative assessment of air pollutants of smog in wagah border and other sites in Lahore, Pakistan. BRAZ J BIOL 2021; 84:e252471. [PMID: 34932634 DOI: 10.1590/1519-6984.252471] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Accepted: 09/02/2021] [Indexed: 11/21/2022] Open
Abstract
Smog has become the fifth season of Pakistan especially in Lahore city. Increased level of air pollutants (primary and secondary) are thought to be responsible for the formation of smog in Lahore. Therefore, the current study was carried out for the evaluation of air pollutants (primary and secondary) of smog in Wagah border particularly and other sites (Jail road, Gulburg) Lahore. For this purpose, baseline data on winter smog from March to December on primary and secondary air pollutants and meteorological parameters was collected from Environmental Protection Department and Pakistan Meteorological Department respectively. Devices being used in both departments for analysis of parameters were also studied. Collected data was further statistically analyzed to determine the correlation of parameters with meteorological conditions and was subjected to air quality index. According to results, PM 10 and PM 2.5 were found very high above the NEQS. NOx concentrations were also high above the permissible limits whereas SO2 and O3 were found below the NEQS thus have no roles in smog formation. Air Quality Index (AQI) of pollutants was PM 2.5(86-227), PM 10 (46-332), NOx (26-110), O3 (19-84) and SO2 (10-95). AQI of PM 2.5 remained between moderate to very unhealthy levels. AQI of PM 10 remained between good to hazardous levels. AQI of NOx remained between good to unhealthy for sensitive groups' levels. AQI of O3 and SO2 remained between good to moderate levels. Pearson correlation showed that every pollutant has a different relation with different or same parameters in different areas. It is concluded from the present study that particulate matter was much more responsible for smog formation. Although NOx also played role in smog formation. So there is need to reduce sources of particulate matter and NOx specifically in order to reduce smog formation in Lahore.
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Affiliation(s)
- H S Yousaf
- Lahore College of Women University, Department of Environmental Science, Jail Road, Lahore, Pakistan
| | - M Abbas
- Lahore College of Women University, Department of Environmental Science, Jail Road, Lahore, Pakistan
| | - N Ghani
- Lahore College of Women University, Department of Environmental Science, Jail Road, Lahore, Pakistan
| | - H Chaudhary
- Lahore College of Women University, Department of Environmental Science, Jail Road, Lahore, Pakistan
| | - A Fatima
- Lahore College of Women University, Department of Environmental Science, Jail Road, Lahore, Pakistan
| | - Z Ahmad
- Lahore College of Women University, Department of Environmental Science, Jail Road, Lahore, Pakistan
| | - S A Yasin
- Lahore College of Women University, GDS Department, Jail Road, Lahore, Pakistan
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14
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Kumar M, Harvey RN, Fatima A, Osei SK, Menning A, Stallion A, Novotny NM. Nutritional Impact of Medical Management and Operation in Responsive and Refractory Ulcerative Colitis in Children. J Am Coll Surg 2021. [DOI: 10.1016/j.jamcollsurg.2021.07.380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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15
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Abrar A, Sarwar S, Abbas M, Chaudhry H, Ghani N, Fatima A, Tahir A. Identification of locally isolated entomopathogenic Fusarium species from the soil of Changa Manga Forest, Pakistan and evaluation of their larvicidal efficacy against Aedes aegypti. BRAZ J BIOL 2021; 83:e246230. [PMID: 34495158 DOI: 10.1590/1519-6984.246230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 04/02/2021] [Indexed: 05/31/2023] Open
Abstract
Dengue fever vectored by the mosquito Aedes aegypti is one of the most rapidly spreading insect-borne diseases. Current reliance of dengue vector control is mostly on chemical insecticides. Growing insecticide resistance in the primary mosquito vector, Aedes aegypti, limits the effectiveness of vector control through chemical insecticides. These chemical insecticides also have negative environmental impacts on animals, plants and human health. Myco-biocontrol agents are naturally occurring organisms and are found to be less damaging to the environment as compared to chemical insecticides. In the present study, entomopathogenic potential of local strains of fungi isolated from soil was assessed for the control of dengue vector. Local fungal isolates presents better alternative to introducing a foreign biocontrol strain, as they may be better adapted to environmental conditions of the area to survive and may have more entomopathogenic efficacy against target organism. Larvicidal efficacy of Fusarium equiseti and Fusarium proliferatum was evaluated against Aedes aegypti. Local strains of F. equiseti (MK371718) and F. proliferatum (MK371715) were isolated from the soil of Changa Manga Forest, Pakistan by using insect bait method. Larvicidal activity of two Fusarium spp. was tested against forth instar larvae of A. aegypti in the laboratory, using concentrations 105, 106, 107 and 108 conidia /ml. LC50 values for F. equiseti after 24h, 48h, 72h and 96h of exposure were recorded as 3.8x 108, 2.9x107, 2.0x107, and 7.1x106 conidia /ml respectively while LC50 values for F. proliferatum were recorded as 1.21x108, 9.6x107, 4.2x107, 2.6x107 conidia /ml respectively after 24h, 48h, 72h and 96h of exposure. The results indicate that among two fungal strains F. equiseti was found to be more effective in terms of its larvicidal activity than F. proliferatum against larvae of A. aegypti.
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Affiliation(s)
- A Abrar
- Lahore College for Women University, Environmental Science Department, Lahore, Pakistan
| | - S Sarwar
- Lahore College for Women University, Botany Department, Lahore, Pakistan
| | - M Abbas
- Lahore College for Women University, Environmental Science Department, Lahore, Pakistan
| | - H Chaudhry
- Lahore College for Women University, Environmental Science Department, Lahore, Pakistan
| | - N Ghani
- Lahore College for Women University, Environmental Science Department, Lahore, Pakistan
| | - A Fatima
- Lahore College for Women University, Environmental Science Department, Lahore, Pakistan
| | - A Tahir
- Lahore College for Women University, Environmental Science Department, Lahore, Pakistan
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16
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Jubair N, Rajagopal M, Chinnappan S, Abdullah NB, Fatima A. Review on the Antibacterial Mechanism of Plant-Derived Compounds against Multidrug-Resistant Bacteria (MDR). Evid Based Complement Alternat Med 2021; 2021:3663315. [PMID: 34447454 PMCID: PMC8384518 DOI: 10.1155/2021/3663315] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 06/27/2021] [Accepted: 07/24/2021] [Indexed: 02/06/2023]
Abstract
Microbial resistance has progressed rapidly and is becoming the leading cause of death globally. The spread of antibiotic-resistant microorganisms has been a significant threat to the successful therapy against microbial infections. Scientists have become more concerned about the possibility of a return to the pre-antibiotic era. Thus, searching for alternatives to fight microorganisms has become a necessity. Some bacteria are naturally resistant to antibiotics, while others acquire resistance mainly by the misuse of antibiotics and the emergence of new resistant variants through mutation. Since ancient times, plants represent the leading source of drugs and alternative medicine for fighting against diseases. Plants are rich sources of valuable secondary metabolites, such as alkaloids, quinones, tannins, terpenoids, flavonoids, and polyphenols. Many studies focus on plant secondary metabolites as a potential source for antibiotic discovery. They have the required structural properties and can act by different mechanisms. This review analyses the antibiotic resistance strategies produced by multidrug-resistant bacteria and explores the phytochemicals from different classes with documented antimicrobial action against resistant bacteria, either alone or in combination with traditional antibiotics.
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Affiliation(s)
- Najwan Jubair
- Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur 56000, Malaysia
| | - Mogana Rajagopal
- Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur 56000, Malaysia
| | - Sasikala Chinnappan
- Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur 56000, Malaysia
| | | | - Ayesha Fatima
- Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, Istanbul, Turkey
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17
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Potu BK, Atwa H, Nasr El-Din WA, Othman MA, Sarwani NA, Fatima A, Deifalla A, Fadel RA. Learning anatomy before and during COVID-19 pandemic: Students' perceptions and exam performance. Morphologie 2021; 106:188-194. [PMID: 34384681 PMCID: PMC9376010 DOI: 10.1016/j.morpho.2021.07.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 07/26/2021] [Accepted: 07/26/2021] [Indexed: 11/17/2022]
Abstract
The objective of our study was to explore the impact of COVID-19 pandemic on learning anatomy and to compare the students’ perceptions of “face-to-face” and “online” anatomy teaching, and to assess their impact on student's performance. We used a descriptive, cross-sectional, questionnaire-based study that focused on a single cohort of undergraduate medial students who attended anatomy demonstrations, at the College of Medicine and Medical Sciences, Arabian Gulf University (CMMS-AGU), both pre-pandemic (face-to-face) during 2019-2020 and the pandemic (online) during 2020-2021. Students who participated in this study responded in favor of face-to-face demonstrations for better understanding of the spatial orientation of body organs and systems, the visualization of the anatomical relations between structures, understanding the difficult anatomical structures, understanding the clinical correlations, and making them more confident about their practical exams. On the other hand, students were in favor of online demonstrations for retaining key information, confidence levels on discussing anatomy learning needs, effective utilization of demonstration time, and lower stress associated with the online learning. Regarding anatomy exam scores, statistically significant difference was found between mean scores of online and onsite exams in one of the two analyzed multiple choice questions tests. However, there was a statistically significant difference between the mean scores of objective structured practical examination of online and onsite exams in the two analyzed tests. Furthermore, the majority of the students who participated in the survey prefer a mixture of both face-to-face and online anatomy demonstrations during the pandemic and also in the post-COVID-19 era.
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Affiliation(s)
- B K Potu
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, 26671 Manama, Bahrain
| | - H Atwa
- Medical Education Unit, College of Medicine and Medical Sciences, Arabian Gulf University, Manama, Bahrain; Medical Education Department, Faculty of Medicine, Suez Canal University, Ismailia, Egypt
| | - W A Nasr El-Din
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, 26671 Manama, Bahrain; Department of Human Anatomy and Embryology, Faculty of Medicine, Suez Canal University, Ismailia, Egypt.
| | - M A Othman
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, 26671 Manama, Bahrain; Department of Histology, Faculty of Medicine, Assiut University, Assiut, Egypt
| | - N A Sarwani
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, 26671 Manama, Bahrain
| | - A Fatima
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, 26671 Manama, Bahrain
| | - A Deifalla
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, 26671 Manama, Bahrain; Department of Human Anatomy and Embryology, Faculty of Medicine, Suez Canal University, Ismailia, Egypt
| | - R A Fadel
- Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, 26671 Manama, Bahrain; Department of Human Anatomy and Embryology, Faculty of Medicine, Suez Canal University, Ismailia, Egypt
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18
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Bondhon TA, Fatima A, Jannat K, Hasan A, Jahan R, Nissapatorn V, Wiart C, Pereira ML, Rahmatullah M. In silico screening of Allium cepa phytochemicals for their binding abilities to SARS and SARS-CoV-2 3C-like protease and COVID-19 human receptor ACE-2. Trop Biomed 2021; 38:214-221. [PMID: 34172713 DOI: 10.47665/tb.38.2.060] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Corona virus SARS-CoV-2-induced viral disease (COVID-19) is a zoonotic disease that was initially transmitted from animals to humans. The virus surfaced towards the end of December 2019 in Wuhan, China where earlier SARS (Severe Acute Respiratory Syndrome) had also surfaced in 2003. Unlike SARS, SARS-CoV-2 (a close relative of the SARS virus) created a pandemic, and as of February 24 2021, caused 112,778,672 infections and 2,499,252 deaths world-wide. Despite the best efforts of scientists, no drugs against COVID-19 are yet in sight; five vaccines have received emergency approval in various countries, but it would be a difficult task to vaccinate twice the world population of 8 billion. The objective of the present study was to evaluate through in silico screening a number of phytochemicals in Allium cepa (onion) regarding their ability to bind to the main protease of COVID-19 known as the 3C-like protease or 3CLpro, (PDB ID: 6LU7), 3CLpro of SARS (PDB ID: 3M3V), and human angiotensin converting enzyme-2 (ACE-2), [PDB ID: 1R42], which functions as a receptor for entry of the virus into humans. Molecular docking (blind docking, that is docking not only against any target pocket) were done with the help of AutoDockVina. It was observed that of the twenty-two phytochemicals screened, twelve showed good binding affinities to the main protease of SARS-CoV-2. Surprisingly, the compounds also demonstrated good binding affinities to ACE-2. It is therefore very likely that the binding affinities shown by these compounds against both 3CLpro and ACE-2 merit further study for their potential use as therapeutic agents.
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Affiliation(s)
- T A Bondhon
- Department of Biotechnology and Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka-1207, Bangladesh
| | - A Fatima
- Quest International University Perak, Ipoh, Malaysia
| | - K Jannat
- Department of Biotechnology and Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka-1207, Bangladesh
| | - A Hasan
- Department of Biotechnology and Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka-1207, Bangladesh
| | - R Jahan
- Department of Biotechnology and Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka-1207, Bangladesh
| | - V Nissapatorn
- chool of Allied Health Sciences, World Union for Herbal Drug Discovery (WUHeDD), and Research Excellence Center for Innovation and Health Products (RECIHP), Walailak University, Nakhon Si Thammarat, Thailand
| | - C Wiart
- School of Pharmacy, University of Nottingham Malaysia Campus, Selangor, Malaysia
| | - M L Pereira
- CICECO-Aveiro Institute of Materials and Department of Medical Sciences, University of Aveiro, Aveiro, Portugal
| | - M Rahmatullah
- Department of Biotechnology and Genetic Engineering, University of Development Alternative, Lalmatia, Dhaka-1207, Bangladesh
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19
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Khalid MZ, Rogers S, Fatima A, Dawe M, Singh R. A Flare of Systemic Lupus Erythematosus Disease After COVID-19 Infection: A Case of Lupus Cerebritis. Cureus 2021; 13:e16104. [PMID: 34350072 PMCID: PMC8325872 DOI: 10.7759/cureus.16104] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/02/2021] [Indexed: 01/10/2023] Open
Abstract
The association between coronavirus disease 19 (COVID-19) and autoimmune disease has been mounting, and literature on COVID-19-induced flare-up of systemic lupus erythematosus (SLE) disease is lacking. We describe a case of lupus cerebritis triggered by COVID-19 in a young female with SLE, who presented with fluctuated mentation, psychomotor retardation, slow speech, and intermittent choreiform movement in the upper part of the body. She had a history of COVID-19 infection three weeks back. Her serum immunoglobulin G antibodies were positive against COVID-19. On examination, she had psychomotor agitation, intermittent choreiform movements of upper limbs, and poor speech. Brain magnetic resonance imaging revealed hyperintense signals in the white matter of both hemispheres, suggestive of lupus cerebritis secondary to COVID-19 infection and lack of any other identifiable risk factor. Management included methylprednisolone, prednisone, and olanzapine. The patient was also placed on monthly intravenous cyclophosphamide, and her condition started improving gradually.
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Affiliation(s)
| | - Sylvette Rogers
- Family Medicine, Caribbean Medical University, Des Plaines, USA
| | - Ayesha Fatima
- Gynaecology & Obstetrics, Fauji Foundation Hospital, Rawalpindi, PAK
| | - Manal Dawe
- Internal Medicine, Capital Medical University, Beijing, CHN
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20
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Rouai M, Fatima A, Malek B, Sassi W, Asma B, Asmahane S, Mokni M. Syndrome de POEMS : importance de l’examen dermatologique pour établir le diagnostic. Rev Med Interne 2021. [DOI: 10.1016/j.revmed.2021.03.109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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21
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Rouai M, Sassi W, Fatima A, Asma B, Asmahane S, Mokni M. Syndrome de Wells : à propos de deux cas. Rev Med Interne 2021. [DOI: 10.1016/j.revmed.2021.03.206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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22
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Khammouma F, Sassi W, Ben Slimane M, Asma B, Souissi A, Fatima A, Mokni M. COVID-19 révélée par un érythème noueux. Rev Med Interne 2021. [PMCID: PMC8191983 DOI: 10.1016/j.revmed.2021.03.065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Abstract
Introduction Observation Discussion Conclusion
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23
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Khammouma F, Sassi W, Ben Slimane M, Asma B, Souissi A, Fatima A, Mokni M. Morphée : à propos de 20 cas. Rev Med Interne 2021. [DOI: 10.1016/j.revmed.2021.03.203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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24
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Callenberg C, Lyons A, Brok DD, Fatima A, Turpin A, Zickus V, Machesky L, Whitelaw J, Faccio D, Hullin MB. Super-resolution time-resolved imaging using computational sensor fusion. Sci Rep 2021; 11:1689. [PMID: 33462284 PMCID: PMC7813875 DOI: 10.1038/s41598-021-81159-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 12/22/2020] [Indexed: 11/29/2022] Open
Abstract
Imaging across both the full transverse spatial and temporal dimensions of a scene with high precision in all three coordinates is key to applications ranging from LIDAR to fluorescence lifetime imaging. However, compromises that sacrifice, for example, spatial resolution at the expense of temporal resolution are often required, in particular when the full 3-dimensional data cube is required in short acquisition times. We introduce a sensor fusion approach that combines data having low-spatial resolution but high temporal precision gathered with a single-photon-avalanche-diode (SPAD) array with data that has high spatial but no temporal resolution, such as that acquired with a standard CMOS camera. Our method, based on blurring the image on the SPAD array and computational sensor fusion, reconstructs time-resolved images at significantly higher spatial resolution than the SPAD input, upsampling numerical data by a factor \documentclass[12pt]{minimal}
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\begin{document}$$12 \times 12$$\end{document}12×12, and demonstrating up to \documentclass[12pt]{minimal}
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\begin{document}$$4 \times 4$$\end{document}4×4 upsampling of experimental data. We demonstrate the technique for both LIDAR applications and FLIM of fluorescent cancer cells. This technique paves the way to high spatial resolution SPAD imaging or, equivalently, FLIM imaging with conventional microscopes at frame rates accelerated by more than an order of magnitude.
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Affiliation(s)
- C Callenberg
- Institute of Computer Science, University of Bonn, Bonn, Germany
| | - A Lyons
- School of Physics & Astronomy, University of Glasgow, Glasgow, G12 8QQ, United Kingdom.
| | - D den Brok
- Institute of Computer Science, University of Bonn, Bonn, Germany
| | - A Fatima
- School of Physics & Astronomy, University of Glasgow, Glasgow, G12 8QQ, United Kingdom
| | - A Turpin
- School of Computing Science, University of Glasgow, G12 8LT, Glasgow, United Kingdom
| | - V Zickus
- School of Physics & Astronomy, University of Glasgow, Glasgow, G12 8QQ, United Kingdom
| | - L Machesky
- Cancer Research UK, Beatson Institute, Glasgow, United Kingdom
| | - J Whitelaw
- Cancer Research UK, Beatson Institute, Glasgow, United Kingdom
| | - D Faccio
- School of Physics & Astronomy, University of Glasgow, Glasgow, G12 8QQ, United Kingdom.
| | - M B Hullin
- Institute of Computer Science, University of Bonn, Bonn, Germany.
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25
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Fatima A, Mishra S. Knowledge and Attitude of Dentists and Dental Students Towards Cone-Beam Computed Tomography. J Res Dent Maxillofac Sci 2020. [DOI: 10.29252/jrdms.5.4.26] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
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26
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Fatima A. Cognition and gait in Parkinson's Disease. Parkinsonism Relat Disord 2020. [DOI: 10.1016/j.parkreldis.2020.06.114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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27
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Ara SA, Fatima A. Acquired Immunity in Dentistry Students After Hepatitis B Vaccination. J Res Dent Maxillofac Sci 2020. [DOI: 10.29252/jrdms.5.3.33] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
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28
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Fatima A, Zaidi S. Identifying the severity of psychosocial symptoms among patients diagnosed with gastric tumors. Do we really need emotional support groups? Ann Oncol 2019. [DOI: 10.1093/annonc/mdz155.047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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29
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Fatima A, Zaidi S. Finding the options of managing duodenal carcinoids in Pakistan. a retrospective study in a tertiary care setup. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz155.046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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30
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Fatima A, Zaidi S. Identifying the nature of perforation in patients diagnosed with gastrointestinal lymphoma. Do we need early interventions? Ann Oncol 2019. [DOI: 10.1093/annonc/mdz155.048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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31
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Cheong P, Yong Y, Fatima A, Ng S, Tan C, Kong B, Tan N, Rajarajeswaran J, Fung S. Cloning, overexpression, purification, and modeling of a lectin (Rhinocelectin) with antiproliferative activity from Tiger Milk Mushroom,
Lignosus rhinocerus. IUBMB Life 2019; 71:1579-1594. [DOI: 10.1002/iub.2101] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Accepted: 05/22/2019] [Indexed: 12/29/2022]
Affiliation(s)
- P.C.H. Cheong
- Department of Molecular MedicineFaculty of Medicine 50603 Kuala Lumpur Malaysia
| | - Y.S. Yong
- Faculty of Applied SciencesUCSI Heights Kuala Lumpur Malaysia
| | - A. Fatima
- Faculty of PharmacyQuest International University Perak (QUIP) Ipoh Perak Darul Ridzuan Malaysia
| | - S.T. Ng
- Ligno Biotech Sdn. Bhd Taman Perindustrian Balakong Jaya Selangor Malaysia
| | - C.S. Tan
- Ligno Biotech Sdn. Bhd Taman Perindustrian Balakong Jaya Selangor Malaysia
| | - B.H. Kong
- Department of Molecular MedicineFaculty of Medicine 50603 Kuala Lumpur Malaysia
| | - N.H. Tan
- Department of Molecular MedicineFaculty of Medicine 50603 Kuala Lumpur Malaysia
| | - J. Rajarajeswaran
- Department of Molecular MedicineFaculty of Medicine 50603 Kuala Lumpur Malaysia
| | - S.Y. Fung
- Department of Molecular MedicineFaculty of Medicine 50603 Kuala Lumpur Malaysia
- Centre for Natural Products Research and Drug Discovery (CENAR)University of Malaya Kuala Lumpur Malaysia
- University of Malaya Centre for Proteomics Research (UMCPR)University of Malaya Kuala Lumpur Malaysia
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Khan A, Ahmed H, Simsek S, Gondal MA, Afzal MS, Irum S, Muhammad I, Mansur H, Fatima A, Ali MS, Riaz N, Akbar A, Weiping W, Yayi G. Poverty-associated emerging infection of Cystic Echinococcosis in population of Northern Pakistan: A hospital based study. Trop Biomed 2019; 36:324-334. [PMID: 33597393] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Cystic Echinococcosis (CE) is one of the most important zoonotic parasitic diseases in human, livestock, and wildlife globally. The prevalence of CE depends upon human behavioral risk factors, the diversity and ecology of animal host interactions and the genetic diversity within Echinococcus species which differ in their zoonotic potential and pathogenicity. It is a neglected, economic and socio-cultural problem in Pakistan. The available data about the incidence of CE is very limited and no extensive study has been reported in Pakistan. The current study was aimed to analyze the hospital reported cases of CE and the associated risk factors related to the incidence of CE. The hospital-based data of CE for the time period of January 2012-December 2017 was collected from Islamabad, Rawalpindi and Peshawar. The data covered demographic characteristics including age, gender, and cyst localization of infected individuals and socioeconomic determinants. The data was analyzed based upon different risk factors along with the different socioeconomic parameters that has an important impact on the distribution of disease. A total of 228 cases were presented in the selected hospitals of different cities during the study period. Out of total 228 patients, 59.21% were males and 40.78% were females (P<0.001). Most infections have been recorded in young adults (>20-30) showing 22.8% of total infected individuals followed by children (0-10) showing 10.5% (n=24), respectively (P<0.001). Liver was the most vulnerable organ (58.77%, n=134) followed by lungs (14.47%, n=33) (P<0.001). The infection was higher among rural communities (84.2%) than urban (12.8%) (P<0.001). Socioeconomic and demographic factors had an important impact on the intensity of disease (P<0.001). The occurrence of cases in children and young adults was an important finding as it indicated an active transmission of the parasite in Pakistan along with the poverty index. Emergence of echinococcosis in Pakistan showed that emerging health issues in Pakistan could bring the disease to limelight for future research. This finding, together with the fact that 1 hospital reported 214 cases over 6 years 325 underlines the need for a program for prevention/control of this disease in Pakistan. The timely measure needs to be taken to hamper the disease development and establishment. In order to control the disease, complete surveillance should be done which in turn weighs down the disease progress.
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Affiliation(s)
- A Khan
- Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad, Pakistan
| | - H Ahmed
- Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad, Pakistan
| | - S Simsek
- Department of Parasitology, Faculty of Veterinary Medicine, University of Firat, 23119, Elazig, Turkey
| | - M A Gondal
- Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad, Pakistan
| | - M S Afzal
- Department of Life Sciences, University of Management and Technology (UMT), Lahore Pakistan
| | - S Irum
- Department of Zoology, University of Gujrat, Gujrat, Pakistan
| | - I Muhammad
- Department of Histopathology, Armed Forces Institute of Pathology (AFIP), Pakistan
| | - H Mansur
- Department of Histopathology, Armed Forces Institute of Pathology (AFIP), Pakistan
| | - A Fatima
- Department of Pathology, Pakistan Institute of Medical Sciences (PIMS), Islamabad, Pakistan
| | - M S Ali
- Department of Ecology and Zoology, University of Veterinary and Animal Sciences (UVAS), Lahore, Pakistan
| | - N Riaz
- Department of Bioinformatics and Biotechnology, International Islamic University Female campus, Islamabad, Pakistan
| | - A Akbar
- Department of Histopathology, Rawal Medical Complex, Islamabad, Pakistan
| | - W Weiping
- Department of Echinococcosis, National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention, Key Laboratory of Parasite and Vector Biology, Ministry of Health, WHO Collaborating Center of Tropical Diseases, National Center for International Researches on Tropical Diseases, Ministry of Science and Technology, 207 Ruijin Er Lu, Shanghai 200025, China
| | - G Yayi
- Center for Global Health, National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention, Key Laboratory of Parasite and Vector Biology, Ministry of Health, WHO Collab orating Center of Tropical Diseases, National Center for International Researches on Tropical Diseases, Ministry of Science and Technology, 207 Ruijin Er Lu, Shanghai 200025, China
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Fatima A, Shastri P, Ali R, Kashyap S, Abellard A, Chinni S, Anand N, Mataria M. DIFFUSE ALVEOLAR HEMORRHAGE: A RARE CASE OF PULMONARY RENAL SYNDROME IN THE BACKGROUND OF SEROPOSITIVE RHEUMATOID ARTHRITIS. Chest 2019. [DOI: 10.1016/j.chest.2019.02.268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
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Fatima A, Anand N, Chinni S, Ali R, Rachid M, Krikorian A. AN ANALYSIS OF NATIONWIDE ASTHMA MORBIDITY BURDEN WITH CORRELATION OF PULMONOLOGIST DISTRIBUTION ACROSS THE US. Chest 2019. [DOI: 10.1016/j.chest.2019.02.207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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35
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Fatima A, Venkatesh AS, Mukherjee R, Agrawal AK, Singh B, Sarkar PS, Kashyap Y, Shripathi T. 3D spatial distribution of ore mineral phases using high resolution synchrotron micro-computed tomography (μCT) combined with optical microscopy. Appl Radiat Isot 2019; 148:49-59. [PMID: 30921617 DOI: 10.1016/j.apradiso.2019.03.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Revised: 02/28/2019] [Accepted: 03/06/2019] [Indexed: 11/24/2022]
Abstract
Ore minerals in dolomites and Graphite Mica Schist (GMS) were studied by synchrotron radiation micro-computed tomography (SR-μCT) and optical microscopy. High resolution μCT images of ore minerals were obtained at Imaging Beamline (BL-4), Indus-2 synchrotron radiation source for the comprehensive volume characterization of minerals. Optical microscopy was used for mineral identification, mineral/rock characterization and quantification of ore mineral assemblages was also confirmed by XRD. 3D images from SR-μCT have shown spatial distribution of major minerals and crystals of different minerals in the volume of samples. The results obtained shows that the GMS and dolomitic hosted rocks mined from region near Udaipur, Rajasthan contains sulfide mineral phases. SR-μCT facilitates visualization of the association of the various metallic minerals with the host rock. The presence of economically important metallic minerals galena, sphalerite and pyrite found in the samples through SR-μCT has implications on exploration and processing of ores.
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Affiliation(s)
- A Fatima
- UGC-DAE Consortium for Scientific Research, University Campus, Khandwa Road, Indore, India.
| | - A S Venkatesh
- Department of Applied Geology, Indian Institute of Technology (Indian School of Mines), Dhanbad, India
| | - R Mukherjee
- Department of Applied Geology, Indian Institute of Technology (Indian School of Mines), Dhanbad, India
| | - A K Agrawal
- Technical Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - B Singh
- Technical Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - P S Sarkar
- Technical Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - Y Kashyap
- Technical Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - T Shripathi
- UGC-DAE Consortium for Scientific Research, University Campus, Khandwa Road, Indore, India
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36
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Fatima A, Zaidi S. MA07.07 Identifying the Severity of Psychosocial Symptoms Among Patients Diagnosed with Lung Cancer. Do We Really Need Emotional Support Groups? J Thorac Oncol 2018. [DOI: 10.1016/j.jtho.2018.08.372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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37
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Fatima A, Zaidi S. P3.CR-25 Finding the Ways to Determine the Prognosis of Pulmonary Carcinoids with Certain Genes/Markers in Pakistan. J Thorac Oncol 2018. [DOI: 10.1016/j.jtho.2018.08.2004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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38
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Zeeshan A, Fatima A, Khalid F, Bhatti MM. Interaction between blood and solid particles propagating through a capillary with slip effects. Microvasc Res 2018; 119:38-46. [PMID: 29678730 DOI: 10.1016/j.mvr.2018.04.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 03/21/2018] [Accepted: 04/16/2018] [Indexed: 11/29/2022]
Abstract
This article describes the interaction between solid particles and blood propagating through a capillary. A slip condition is considered on the walls of the capillary. The rheological features of the blood are discussed by considering as a two-phase Newtonian fluid model, i.e., the suspension of cells in plasma. A perturbation method is successfully applied to obtain the series solution of the governing coupled differential equations. The series solution for both fluid and particle phase are presented up to second order approximation. The expressions for the velocity and pressure distributions under slip effects are determined within a tube. Furthermore, the current results are beneficial to understand the rheological features of blood which will be helpful to interpret and analyze more complex blood flow models.
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Affiliation(s)
- A Zeeshan
- Department of Mathematics and Statistics, International Islamic University, Islamabad, Pakistan
| | - A Fatima
- Department of Mathematics and Statistics, International Islamic University, Islamabad, Pakistan
| | - F Khalid
- Department of Mathematics and Statistics, International Islamic University, Islamabad, Pakistan
| | - M M Bhatti
- Shanghai Institute of Applied Mathematics and Mechanics, Shanghai University, Shanghai 200072, China; Shanghai Key Laboratory of Mechanics in Energy Engineering, Shanghai University, Yanchang Road, Shanghai 200072, China.
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Hossan MS, Fatima A, Rahmatullah M, Khoo TJ, Nissapatorn V, Galochkina AV, Slita AV, Shtro AA, Nikolaeva Y, Zarubaev VV, Wiart C. Antiviral activity of Embelia ribes Burm. f. against influenza virus in vitro. Arch Virol 2018; 163:2121-2131. [PMID: 29633078 DOI: 10.1007/s00705-018-3842-6] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Accepted: 03/31/2018] [Indexed: 11/28/2022]
Abstract
Viral respiratory infections are raising serious concern globally. Asian medicinal plants could be useful in improving the current treatment strategies for influenza. The present study examines the activity of five plants from Bangladesh against influenza virus. MDCK cells infected with influenza virus A/Puerto Rico/8/34 (H1N1) were treated with increasing concentrations of ethyl acetate extracts, and their cytotoxicity (CC50), virus-inhibiting activity (IC50), and selectivity index (SI) were calculated. The ethyl acetate extract of fruits of Embelia ribes Burm. f. (Myrsinaceae) had the highest antiviral activity, with an IC50 of 0.2 µg/mL and a SI of 32. Its major constituent, embelin, was further isolated and tested against the same virus. Embelin demonstrated antiviral activity, with an IC50 of 0.3 µM and an SI of 10. Time-of-addition experiments revealed that embelin was most effective when added at early stages of the viral life cycle (0-1 h postinfection). Embelin was further evaluated against a panel of influenza viruses including influenza A and B viruses that were susceptible or resistant to rimantadine and oseltamivir. Among the viruses tested, avian influenza virus A/mallard/Pennsylvania/10218/84 (H5N2) was the most susceptible to embelin (SI = 31), while A/Aichi/2/68 (H3N2) virus was the most resistant (SI = 5). In silico molecular docking showed that the binding site for embelin is located in the receptor-binding domain of the viral hemagglutinin. The results of this study provide evidence that E. ribes can be used for development of a novel alternative anti-influenza plant-based agent.
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Affiliation(s)
- Md Shahadat Hossan
- School of Pharmacy, University of Nottingham, Malaysia Campus, 43500, Semenyih, Malaysia
| | - Ayesha Fatima
- Faculty of Pharmacy, Quest International University, 30250, Ipoh, Malaysia
| | - Mohammed Rahmatullah
- Department of Pharmacy, Faculty of Life Science, University of Development Alternative (UODA), Dhaka, 1207, Bangladesh
| | - Teng Jin Khoo
- School of Pharmacy, University of Nottingham, Malaysia Campus, 43500, Semenyih, Malaysia
| | - Veeranoot Nissapatorn
- School of Allied Health Sciences, Walailak University, Nakhon Si Thammarat, 80161, Thailand
| | - Anastasia V Galochkina
- Pasteur Institute of Epidemiology and Microbiology, 14 Mira str, 197101, St. Petersburg, Russia
| | - Alexander V Slita
- Pasteur Institute of Epidemiology and Microbiology, 14 Mira str, 197101, St. Petersburg, Russia
| | - Anna A Shtro
- Influenza Research Institute, 15/17 prof. Popova str, 197376, St. Petersburg, Russia
| | - Yulia Nikolaeva
- Influenza Research Institute, 15/17 prof. Popova str, 197376, St. Petersburg, Russia
| | - Vladimir V Zarubaev
- Pasteur Institute of Epidemiology and Microbiology, 14 Mira str, 197101, St. Petersburg, Russia.
| | - Christophe Wiart
- School of Pharmacy, University of Nottingham, Malaysia Campus, 43500, Semenyih, Malaysia.
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Fatima A. Identifying the severity of psychosocial symptoms among parents of children diagnosed with cancer. Eur J Cancer 2018. [DOI: 10.1016/s0959-8049(18)30295-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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41
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Zaidi S, Fatima A. Traumatic brain injury-a leading cause of death in Pakistan. A prospective study. J Neurol Sci 2017. [DOI: 10.1016/j.jns.2017.08.2126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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42
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Shahid M, Manchi G, Slunsky P, Naseer O, Fatima A, Leo B, Raila J. A systemic review of existing serological possibilities to diagnose canine osteoarthritis with a particular focus on extracellular matrix proteoglycans and protein. Pol J Vet Sci 2017; 20:189-201. [PMID: 28525322 DOI: 10.1515/pjvs-2017-0024] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Extra-cellular matrix (ECM) components are important and their stabilization is significant in maintaining normal healthy joint environment. In osteoarthritis (OA), ECM components are altered and indicate disease progression. The joint ECM is composed of proteoglycans (aggrecan, perlecan, inter α-trypsin inhibitor), glycoproteins (fibronectin, lubricin, COMP) and collagen types (most abundantly collagen type II) which represent structural and functional transformation during disease advancement. ECM investigation revealed significant biomarkers of OA that could be used as a diagnostic and therapeutic tool in different canine orthopedic diseases. This review deliberates our current findings of how the components of ECM change at the molecular level during disease progression in canine OA.
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Fatima A, Zaidi S. Colorectal cancer and its awareness. Eur J Cancer 2017. [DOI: 10.1016/s0959-8049(17)30245-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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44
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Fatima A, Zaidi S. Cervical cancer – treatment outcomes and failure. Eur J Cancer 2017. [DOI: 10.1016/s0959-8049(17)30369-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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45
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Fatima A, Zaidi S. Inspection of cervix using acetic acid – a good alternative to Pap smear in underdeveloped countries. Eur J Cancer 2017. [DOI: 10.1016/s0959-8049(17)30370-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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46
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Fatima A, Kataria S, Baghel L, Guruprasad KN, Agrawal AK, Singh B, Sarkar PS, Shripathi T, Kashyap Y. Synchrotron-based phase-sensitive imaging of leaves grown from magneto-primed seeds of soybean. J Synchrotron Radiat 2017; 24:232-239. [PMID: 28009562 DOI: 10.1107/s1600577516015745] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2016] [Accepted: 10/06/2016] [Indexed: 06/06/2023]
Abstract
Experiments were conducted to study the effects of static magnetic fields (SMFs) on the venation network of soybean leaves using the synchrotron-based X-ray micro-imaging technique. The seeds of soybean (Glycine max, variety JS-335) were pretreated with different SMFs from 50 to 300 mT in steps of 50 mT for 1 h. The phase-contrast images obtained showed that, as the strength of the SMF increased, the area, width of the midrib, area of the midrib and minor vein of the middle leaflets of third trifoliate leaves also increased up to the SMF strength of 200 mT (1 h) and decreased thereafter. Quantification of the major conducting vein also showed the differences in the major and minor vein structures of the soybean leaves as compared with control leaves. Further, the phase-retrieval technique has been applied to make the segmentation process easy and to quantify the major and minor veins in the venation network. The width and area of midrib enhancement by pre-treatment with SMF implies an enhancement in the uptake of water, which in turn causes an increased rate of photosynthesis and stomatal conductance.
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Affiliation(s)
- A Fatima
- UGC-DAE, Consortium for Scientific Research, Indore (MP), India
| | - S Kataria
- School of Life Sciences, DAVV, Khandwa Road, Indore (MP), India
| | - L Baghel
- School of Life Sciences, DAVV, Khandwa Road, Indore (MP), India
| | - K N Guruprasad
- School of Life Sciences, DAVV, Khandwa Road, Indore (MP), India
| | - A K Agrawal
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - B Singh
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - P S Sarkar
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - T Shripathi
- UGC-DAE, Consortium for Scientific Research, Indore (MP), India
| | - Y Kashyap
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
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Fatima A, Kim E. P272 Eosinophilic gastroenteritis in a study of sublingual immunotherapy (SLIT) for peanut allergy. Ann Allergy Asthma Immunol 2016. [DOI: 10.1016/j.anai.2016.09.285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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48
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Fatima A, Kataria S, Guruprasad KN, Agrawal AK, Singh B, Sarkar PS, Shripathi T, Kashyap Y, Sinha A. Synchrotron X-ray phase contrast imaging of leaf venation in soybean (Glycine max) after exclusion of solar UV (280-400 nm) radiation. J Synchrotron Radiat 2016; 23:795-801. [PMID: 27140160 DOI: 10.1107/s1600577516003507] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2015] [Accepted: 02/29/2016] [Indexed: 06/05/2023]
Abstract
The hydraulic efficiency of a leaf depends on its vascular structure as this is responsible for transport activities. To investigate the effect of exclusion of UVAB and UVB radiation from the solar spectrum on the micro-structure of leaves of soybean (Glycine max, variety JS-335), a field experiment was conducted using synchrotron-based phase contrast imaging (PCI). Plants were grown in specially designed UV exclusion chambers, and wrapped with filters that excluded UVB (280-315 nm) or UVAB (280-400 nm), or transmitted all the ambient solar UV (280-400 nm) radiation (filter control). Qualitative observation of high-resolution X-ray PCI images obtained at 10 keV has shown the differences in major and minor vein structures of the leaves. The mid-rib width of the middle leaflet of third trifoliate leaves, for all treatments, were obtained using quantitative image analysis. The width of the mid-rib of the middle leaflet of third trifoliate leaves of UVB excluded plants was found to be more compared to leaves of filter control plants, which are exposed to ambient UV. The mid-rib or the main conducting vein transports water and sugars to the whole plant; therefore, mid-rib enhancement by the exclusion of solar UV radiation possibly implies enhancement in the leaf area which in turn causes an increased rate of photosynthesis.
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Affiliation(s)
- A Fatima
- UGC-DAE, Consortium for Scientific Research, University Campus, Khandwa Road, Indore (MP), India
| | - S Kataria
- School of Life Sciences, DAVV, Khandwa Road, Indore (MP), India
| | - K N Guruprasad
- School of Life Sciences, DAVV, Khandwa Road, Indore (MP), India
| | - A K Agrawal
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - B Singh
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - P S Sarkar
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - T Shripathi
- UGC-DAE, Consortium for Scientific Research, University Campus, Khandwa Road, Indore (MP), India
| | - Y Kashyap
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - A Sinha
- Neutron and X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
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Nanjundaiah N, Fatima A, Reddy D. Study of profile of Plasmodium vivax malaria in a medical college hospital. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.02.791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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50
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Fatima A, Kulkarni VK, Banda NR, Agrawal AK, Singh B, Sarkar PS, Tripathi S, Shripathi T, Kashyap Y, Sinha A. Non-destructive evaluation of teeth restored with different composite resins using synchrotron based micro-imaging. J Xray Sci Technol 2016; 24:119-132. [PMID: 26890899 DOI: 10.3233/xst-160530] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
BACKGROUND Application of high resolution synchrotron micro-imaging in microdefects studies of restored dental samples. OBJECTIVE The purpose of this study was to identify and compare the defects in restorations done by two different resin systems on teeth samples using synchrotron based micro-imaging techniques namely Phase Contrast Imaging (PCI) and micro-computed tomography (MCT). With this aim acquired image quality was also compared with routinely used RVG (Radiovisiograph). METHODS Crowns of human teeth samples were fractured mechanically involving only enamel and dentin, without exposure of pulp chamber and were divided into two groups depending on the restorative composite materials used. Group A samples were restored using a submicron Hybrid composite material and Group B samples were restored using a Nano-Hybrid restorative composite material. Synchrotron based PCI and MCT was performed with the aim of visualization of tooth structure, composite resin and their interface. RESULTS The quantitative and qualitative comparison of phase contrast and absorption contrast images along with MCT on the restored teeth samples shows comparatively large number of voids in Group A samples. CONCLUSIONS Quality assessment of dental restorations using synchrotron based micro-imaging suggests Nano-Hybrid resin restorations (Group B) are better than Group A.
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Affiliation(s)
- A Fatima
- UGC- DAE Consortium for Scientific Research, University Campus, Indore (M.P.), India
| | - V K Kulkarni
- Department of Pedodontics and Preventive Dentistry, Modern Dental College, Indore (M.P.), India
| | - N R Banda
- Department of Pedodontics and Preventive Dentistry, Modern Dental College, Indore (M.P.), India
| | - A K Agrawal
- Neutron & X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - B Singh
- Neutron & X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - P S Sarkar
- Neutron & X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - S Tripathi
- UGC- DAE Consortium for Scientific Research, University Campus, Indore (M.P.), India
| | - T Shripathi
- UGC- DAE Consortium for Scientific Research, University Campus, Indore (M.P.), India
| | - Y Kashyap
- Neutron & X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
| | - A Sinha
- Neutron & X-ray Physics Division, Bhabha Atomic Research Center, Trombay, Mumbai, India
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