Genetic Analysis of the Emerging Citrus Yellow Vein Clearing Virus Reveals a Divergent Virus Population in American Isolates

Citrus yellow vein clearing virus is a previously reported citrus virus from Asia with widespread distribution in China. In 2022, the California Department of Food and Agriculture conducted a multipest citrus survey targeting multiple citrus pathogens including citrus yellow vein clearing virus (CYVCV). In March 2022, a lemon tree with symptoms of vein clearing, chlorosis, and mottling in a private garden in the city of Tulare, California, tested positive for CYVCV, which triggered an intensive survey in the surrounding areas. A total of 3,019 plant samples, including citrus and noncitrus species, were collected and tested for CYVCV using conventional reverse transcription polymerase chain reaction, reverse transcription quantitative polymerase chain reaction, and Sanger sequencing. Five hundred eighty-six citrus trees tested positive for CYVCV, including eight citrus species not previously recorded infected under field conditions. Comparative genomic studies were conducted using 17 complete viral genomes. Sequence analysis revealed two major phylogenetic groups. Known Asian isolates and five California isolates from this study made up the first group, whereas all other CYVCV isolates from California formed a second group, distinct from all worldwide isolates. Overall, the CYVCV population shows rapid expansion and high differentiation indicating a population bottleneck typical of a recent introduction into a new geographic area.

Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex

Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.

Phytophthora Species Are Common on Nursery Stock Grown for Restoration and Revegetation Purposes in California

Phytophthora tentaculata was detected for the first time in North America in 2012 in a nursery on sticky monkeyflower plant (Diplacus aurantiacus) and again in 2014 on outplanted native plants. At that time, this species was listed as a federally actionable and reportable pathogen by the USDA. As a result of these detections, California native plant nurseries were surveyed to determine the prevalence of Phytophthora species on native plant nursery stock. A total of 402 samples were collected from 26 different native plant nurseries in California between 2014 and 2016. Sampling focused on plants with symptoms of root and crown rot. Symptomatic tissue was collected and tested by immunoassay, culture, and molecular techniques (PCR). Identifications were made using sequences from the internal transcribed spacer (ITS) rDNA region, a portion of the trnM-trnP-trnM, or the atp9-nad9 mitochondrial regions. Phytophthora was confirmed from 149 of the 402 samples (37%), and from plants in 22 different host families. P. tentaculata was the most frequently detected species in our survey, followed by P. cactorum and members of the P. cryptogea complex. Other species include P. cambivora, P. cinnamomi, P. citricola, P. hedraiandra, P. megasperma, P. multivora, P. nicotianae, P. niederhauserii, P. parvispora, P. pini, P. plurivora, and P. riparia. A few Phytophthora sequences generated from mitochondrial regions could not be assigned to a species. Although this survey was limited to a relatively small number of California native plant nurseries, Phytophthora species were detected from three quarters of them (77%). In addition to sticky monkeyflower, P. tentaculata was detected from seven other hosts, expanding the number of associated hosts. During this survey, P. parvispora was detected for the first time in North America from symptomatic crowns and roots of the nonnative Mexican orange blossom (Choisya ternata). Pathogenicity of P. parvispora and P. nicotianae was confirmed on this host. These findings document the widespread occurrence of Phytophthora spp. in native plant nurseries and highlight the potential risks associated with outplanting infested nursery-grown stock into residential gardens and wildlands.

Multiple origins of downy mildews and mito-nuclear discordance within the paraphyletic genus Phytophthora

Phylogenetic relationships between thirteen species of downy mildew and 103 species of Phytophthora (plant-pathogenic oomycetes) were investigated with two nuclear and four mitochondrial loci, using several likelihood-based approaches. Three Phytophthora taxa and all downy mildew taxa were excluded from the previously recognized subgeneric clades of Phytophthora, though all were strongly supported within the paraphyletic genus. Downy mildews appear to be polyphyletic, with graminicolous downy mildews (GDM), brassicolous downy mildews (BDM) and downy mildews with colored conidia (DMCC) forming a clade with the previously unplaced Phytophthora taxon totara; downy mildews with pyriform haustoria (DMPH) were placed in their own clade with affinities to the obligate biotrophic P. cyperi. Results suggest the recognition of four additional clades within Phytophthora, but few relationships between clades could be resolved. Trees containing all twenty extant downy mildew genera were produced by adding partial coverage of seventeen additional downy mildew taxa; these trees supported the monophyly of the BDMs, DMCCs and DMPHs but suggested that the GDMs are paraphyletic in respect to the BDMs or polyphyletic. Incongruence between nuclear-only and mitochondrial-only trees suggests introgression may have occurred between several clades, particularly those containing biotrophs, questioning whether obligate biotrophic parasitism and other traits with polyphyletic distributions arose independently or were horizontally transferred. Phylogenetic approaches may be limited in their ability to resolve some of the complex relationships between the "subgeneric" clades of Phytophthora, which include twenty downy mildew genera and hundreds of species.

Phylogeny and taxonomy of the genus Tubakia s. lat

The genus Tubakia is revised on the basis of morphological and phylogenetic data. The phylogenetic affinity of Tubakia to the family Melanconiellaceae (Diaporthales) was recently postulated, but new analyses based on sequences retrieved from material of the type species of Tubakia, T. dryina, support a family of its own, viz. Tubakiaceae fam. nov. Our phylogenetic analyses revealed the heterogeneity of Tubakia s. lat. which is divided into several genera, viz., Tubakia s. str., Apiognomonioides gen. nov. (type species: Apiognomonioides supraseptata), Involutiscutellula gen. nov. (type species: Involutiscutellula rubra), Oblongisporothyrium gen. nov. (type species: Oblongisporothyrium castanopsidis), Paratubakia gen. nov. (type species: Paratubakia subglobosa), Racheliella gen. nov. (type species: Racheliella wingfieldiana sp. nov.), Saprothyrium gen. nov. (type species: Saprothyrium thailandense) and Sphaerosporithyrium gen. nov. (type species: Sphaerosporithyrium mexicanum sp. nov.). Greeneria saprophytica is phylogenetically closely allied to Racheliella wingfieldiana and is therefore reallocated to Racheliella. Particular emphasis is laid on a revision and phylogenetic analyses of Tubakia species described from Japan and North America. Almost all North American collections of this genus were previously referred to as T. dryina s. lat., which is, however, a heterogeneous complex. Several new North American species have recently been described. The new species Sphaerosporithyrium mexicanum, Tubakia melnikiana and T. sierrafriensis, causing leaf spots on several oak species found in the North-Central Mexican state Aguascalientes and the North-Eastern Mexican state Nuevo León, are described, illustrated, and compared with similar species. Several additional new species are introduced, including Tubakia californica based on Californian collections on various species of the genera Chrysolepis, Notholithocarpus and Quercus, and T. dryinoides, T. oblongispora, T. paradryinoides, and Paratubakia subglobosoides described on the basis of Japanese collections. Tubakia suttoniana nom. nov., based on Dicarpella dryina, is a species closely allied to T. californica and currently only known from Europe. Tubakia dryina, type species of Tubakia, is epitypified, and the phylogenetic position and circumscription of Tubakia are clarified. A revised, supplemented key to the species of Tubakia and allied genera on the basis of conidiomata is provided.

Detection of Phytophthora ramorum in Nurseries and Forest Lands in California in 2004 to 2009

From December 2004 through May 2009, samples were collected from California nurseries and wild lands to survey for Phytophthora ramorum and comply with federal regulations of nursery stock. Samples were prescreened by an enzyme-linked immunosorbent assay (ELISA) that detects Phytophthora spp. and tested by culture, P. ramorum-specific real-time polymerase chain reaction (PCR), and nested PCR. Yearly percentages of infected samples ranged from 0.6 to 2.3%. Camellia spp., Rhododendron spp., Magnolia spp., Pieris spp., and Laurus nobilis tested positive the most frequently in the nurseries and Lithocarpus densiflorus, Umbellularia californica, and Quercus agrifolia tested positive most often from wild lands. Of the 118,410 samples isolated onto PARP media, 0.8% was identified as P. ramorum. Of 115,056 samples tested by ELISA, 5.9% tested positive for Phytophthora spp. Of the 6,520 samples tested by PCR, 12.4% tested positive for P. ramorum. The false-negative, positive, and internal control failure rates of the assays are discussed. After removing the seasonal effect of sampling strategy, isolation of the pathogen into culture was found to be seasonally dependent whereas detectability by PCR and ELISA was not. To our knowledge, this is the first evaluation of a regulatory testing program for a plant pathogen on this scale using standardized assays.

Leaf Spot of Arugula, Caused by Alternaria japonica, in California

Arugula (Eruca vesicaria subsp. sativa (Mill.) Thell. is a Cruciferous plant used for culinary purposes. From 2012 to 2013, a foliar disease seriously impacted the growth and quality of about 0.1 ha of hydroponically grown arugula at a Santa Barbara County nursery. Samples of affected arugula seedlings exhibited adaxial and abaxial symptoms of mottling with circular to oval, water soaked, dark green leaf spots, each 1 to 3 mm in diameter, and some of which coalesced. Conidia of an Alternaria sp. were observed on the foliage. Symptomatic leaf pieces were disinfested with 0.6% NaOCl, blotted dry, and plated on acidified potato dextrose agar (APDA). Cultures were incubated under near-UV lights for 24 h/day. Olivaceous-grey colonies of the same Alternaria species observed on the leaves grew after 7 days. After 21 days on carrot-piece agar (3), the fungus produced beakless conidia with longitudinal and constricted transverse septa that measured 30.0 to 69.0 × 12.5 to 20.0 μm and were borne singly or in short chains of 2 to 3 conidia. In addition, knots of dark, thick-walled micro-chlamydospores were produced by the hyphae. The fungus was identified morphologically as Alternaria japonica Yoshii (2), and the species confirmed by sequence analysis. A portion of the internal transcribed spacer (ITS) region of ribosomal DNA (rDNA) was amplified using ITS1 and ITS4 primers (4). The sequence (GenBank Accession No. KJ126846) was 100% identical to the ITS rDNA sequence of an isolate of A. japonica (KC584201) using a BLASTn query. A. japonica was also detected in seeds of the lot used to grow the affected arugula crop. Pathogenicity of a single isolate was tested by inoculating four 37-day-old plants each of arugula, cabbage (Brassica oleracea L. var. capitata), and broccoli (B. oleracea L. var. botrytis L.). Inoculum was obtained from 11-day-old cultures of the isolate grown at 24°C on half-strength APDA. Half of a 2.5 cm diameter agar plug containing hyphae and conidia was ground in 2 ml of sterilized water, and the volume of water increased to 45 ml. Leaves of four plants/host species were sprayed with 3.5 to 4.0 ml of inoculum. The inoculated plants and four control plants of each species treated similarly with sterilized water were immediately incubated in a dark dew chamber at 23°C. After 72 h in the dew chamber, inoculated plants of all three hosts produced similar symptoms of wilting, water soaking, and dark green leaf spotting as the original symptomatic field plants. Conidia formed in the leaf spots on both sides of inoculated leaves. A. japonica was re-isolated from all of the inoculated plants but from none of the symptomless control plants using the method previously described. Pathogenicity tests were repeated, with similar results. Although reported in Italy in 2013 (1), to our knowledge, this is the first report of A. japonica on arugula in the United States. References: (1) G. Gilardi et al. Acta Hort. 1005:569, 2013. (2) E. G. Simmons. Page 368 in: Alternaria, An Identification Manual. CBS Fungal Biodiversity Centre, Utrecht, 2007. (3) S. Werres et al. Z. Planzenkr. Pflanzensh. 108:113, 2001. (4) T. J. White et al. Page 315 in: PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, CA, 1990.

First Detection of Puccinia ballotiflora on Salvia greggii

Salvia greggii, autumn sage, is grown for its bright red to white flowers that bloom in late summer and fall. In February of 2008, a rust sample was sent to the CDFA plant pathology diagnostics laboratory in Sacramento from a nursery in Santa Barbara County, CA. Pustules were abundant on older leaves causing moderate defoliation of containerized stock. Only the varieties with entirely red or pink flowers were affected. S. greggii 'Hotlips,' a popular white/red bicolor, was unaffected. Amphigenous uredinia were cinnamon brown, round, powdery, and sometimes surrounded by yellow halos. Pustules were found primarily on the leaves, although a few were on the stems. Urediniospores were broadly obovoid, subglobose to broadly ellipsoid, echinulate, and 22 to 27 × 24 to 32 μm (24.9 × 26.9 μm average) with one apical pore and 2 to 3 equatorial pores. Urediniospore walls were cinnamon brown in color and measured 1.0 to 2.0 μm (1.5 μm average). No telia were observed. After the initial detection, this rust was found in additional nursery sites in Santa Cruz, Santa Clara, Santa Barbara, and Ventura counties in 2008 and 2009. In November of 2011, a sample from a landscape planting in Santa Barbara County of a similar rust with telia and teliospores was submitted. Urediniospores and teliospores were present in the same lesions. Lesions with teliospores were located primarily on the stems. Mature teliospores were two-celled, verrucose, chocolate brown, and 25 to 31 × 32 to 40 μm (28.6 × 35.3 μm average) with a pedicel ranging from 8 to 12 × 38 to 104 μm, sometimes attached obliquely. The rust matched the morphological characteristics of Puccinia ballotiflora (Syn = P. ballotaeflora Long) (2). To confirm pathogenicity, three 20-cm-tall plants of S. greggii 'Navajo Red' in 3.8-liter pots were spray inoculated with 10 ml of a 2.5 × 10³ urediniospores per ml suspension and incubated in a dew chamber at 23°C for 2 days in the dark. Plants were transferred to a growth chamber maintained at 22°C with a 12-h photoperiod. Three plants were sprayed with sterile distilled water as controls. Uredinial pustules (1 to 2 mm) appeared on the abaxial surface of the leaves after 3 weeks. The pathogenicity test was repeated with similar results. The internal transcribed spacer region of rDNA and a portion of the 28S rDNA were amplified with primer pairs ITS5 (5'-GGAAGTAAAAGTCGTAACAAGG-3'), Rust1 (5'-GCTTACTGCCTTCCTCAATC-3'), and Rust2inv (5'-GATGAAGAACACAGTGAAA-3'), LR6 (5'-CGCAGTTCTGCTTACC-3') as described by Aime (1) and sequenced using the amplification primers, Rust2 (5'-TTTCACTGTGTTCTTCATC-3') and Rust3 (5'-GAATCTTTGAACGCACCTTG-3'). BLAST query of the assembled sequence, GenBank KF381491, was 91% identical to P. acroptili, JN204194, its closest match of similar length. P. ballotiflora has been found in Colombia on S. cataractarum, S. petiolaris, and S. mayori (3), and in Texas and Mexico on S. ballotiflora (4). To the best of our knowledge, this is the first detection of P. ballotiflora on S. greggii worldwide. P. ballotiflora is already widespread in the nursery trade in California and frequent fungicide applications are necessary to keep plants marketable. References: (1) M. C. Aime. Mycoscience 47:112, 2006. (2) J. W. Baxter and G. B. Cummins. Lloydia 14:201, 1951. (3) D. F. Farr and A. Y. Rossman. Fungal Databases. Systematic Botany and Mycology Laboratory, Online publication http://nt.ars-grin.gov/fungaldatabases ARS, USDA, 2014 (4) F. D. Kern et al. Mycologia 25:448, 1933.

First Report of Root and Stem Rot Caused by Phytophthora tentaculata on Mimulus aurantiacus in North America

Sticky monkey flower plant, Mimulus aurantiacus (Phrymaceae), is a small, perennial shrub that is widely distributed throughout California, especially in coastal and disturbed habitats. It is also found in native plantings in parks and landscapes. In October 2012, nearly all the M. aurantiacus plants grown in a Monterey County, CA nursery for a restoration project were stunted and had dull, yellowish leaves. Roots and stem collars had necrotic, sunken lesions with few feeder roots. Thirty percent of the plants had died. Samples of diseased plants were sent to the CDFA-PPDC Lab and tested positive for Phytophthora sp. using the Agdia ELISA Phytophthora kit (Agdia, Elkhart, IN). A Phytophthora sp. was consistently isolated from the tissue on corn meal agar-PARP (CMA-PARP) (2). Sporangia were spherical to ovoid, papillate to bipapillate and 17 to 42.5 (avg. 27.5) × 12 to 35 (avg. 22.9) μm, with a length/breadth ratio of 1.2:1. Chlamydospores, which were spherical, terminal to intercalary, thin walled and 27.5 to 40 μm, and hyphal swellings formed on CMA-PARP. Spherical oospores, 25 to 36 μm, with primarily paragynous antheridia formed readily on V8 juice agar. rDNA sequences of the internal transcribed spacer (ITS) region of the isolates (GenBank KF667505), amplified using primers ITS1 and ITS4, were 100% identical to Phytophthora tentaculata (CBS 552.96, GenBank AF266775) by a BLAST query (1,3). To assess pathogenicity, exposed root crowns of three 3.78-liter potted M. aurantiacus plants were inoculated with 20 ml of zoospore suspension (2 × 10⁴ ml^-1). Plants were maintained in a 23°C growth chamber with a 12-h photoperiod and watered daily. Sterile water was applied to the exposed crowns of three control plants. At 2 weeks, all inoculated plants were wilted with chlorotic foliage. After 3 weeks, the cortical tissue of the crowns and roots was discolored and sloughing and P. tentaculata was recovered on CMA-PARP. P. tentaculata did not grow from the asymptomatic control plants. Inoculations were repeated with similar results. P. tentaculata is a homothallic species in Phytophthora clade 1 that causes crown, root, and stalk rot of nursery plants in Europe and China (1,4). A USDA PERAL analysis lists it as one of the top 5 Phytophthora species of concern to the United States (4). Genera infected with P. tentaculata include Apium, Aucklandia, Chicorium, Chrysanthemum, Delphinium, Gerbera, Lavandula, Santolina, Origanum, and Verbena (4). To our knowledge, this is the first report of P. tentaculata in North America. The source of inoculum of P. tentaculata in California remains unknown. The nursery used seed and cuttings of M. aurantiacus from nearby native areas for propagation, and P. tentaculata was not found in neighboring plant hosts or by baiting soil and water at the nursery. All infected M. aurantiacus material was destroyed. The presence of P. tentaculata in California nurseries could have serious economic impacts on the nursery industry and environmental impacts on susceptible native hosts, if spread into the wildlands. References: (1) D. E. L. Cooke et al. Fungal Genet. Biol. 30:17, 2000. (2) S. N. Jeffers and S. B. Martin. Plant Dis. 70:1038, 1986. (3) H. Krober and R. Z. Marwitz. Pflanzenkrankh. Pflanzenschutz 100:250, 1993. (4) U.S. Department of Agriculture, Animal and Plant Health Inspection Services (APHIS). Phytophthora species in the Environment and Nursery Settings New Pest Response Guidelines, USDA-APHIS-PPQ-Emergency and Domestic Programs-Emergency Management, Riverdale, MD, 2010.

Development of a multiplex assay for genus- and species-specific detection of Phytophthora based on differences in mitochondrial gene order

A molecular diagnostic assay for Phytophthora spp. that is specific, sensitive, has both genus- and species-specific detection capabilities multiplexed, and can be used to systematically develop markers for detection of a wide range of species would facilitate research and regulatory efforts. To address this need, a marker system was developed based on the high copy sequences of the mitochondrial DNA utilizing gene orders that were highly conserved in the genus Phytophthora but different in the related genus Pythium and plants to reduce the importance of highly controlled annealing temperatures for specificity. An amplification primer pair designed from conserved regions of the atp9 and nad9 genes produced an amplicon of ≈340 bp specific for the Phytophthora spp. tested. The TaqMan probe for the genus-specific Phytophthora test was designed from a conserved portion of the atp9 gene whereas variable intergenic spacer sequences were used for designing the species-specific TaqMan probes. Specific probes were developed for 13 species and the P. citricola species complex. In silico analysis suggests that species-specific probes could be developed for at least 70 additional described and provisional species; the use of locked nucleic acids in TaqMan probes should expand this list. A second locus spanning three tRNAs (trnM-trnP-trnM) was also evaluated for genus-specific detection capabilities. At 206 bp, it was not as useful for systematic development of a broad range of species-specific probes as the larger 340-bp amplicon. All markers were validated against a test panel that included 87 Phytophthora spp., 14 provisional Phytophthora spp., 29 Pythium spp., 1 Phytopythium sp., and 39 plant species. Species-specific probes were validated further against a range of geographically diverse isolates to ensure uniformity of detection at an intraspecific level, as well as with other species having high levels of sequence similarity to ensure specificity. Both diagnostic assays were also validated against 130 environmental samples from a range of hosts. The only limitation observed was that primers for the 340 bp atp9-nad9 locus did not amplify Phytophthora bisheria or P. frigida. The identification of species present in a sample can be determined without the need for culturing by sequencing the genus-specific amplicon and comparing that with a reference sequence database of known Phytophthora spp.

First Published Report of Rust on White Alder Caused by Melampsoridium hiratsukanum in the United States

White alder (Alnus rhombifolia) is a fast-growing tree native to the western United States and is planted frequently in landscapes. In September 2010, mature leaves of white alder with small, orange-yellow pustules were collected in a commercial nursery in Santa Cruz County, CA. Approximately 25 white alder trees were affected. Collected leaves were sent to the California Department of Food and Agriculture Plant Pest Diagnostics Laboratory. Young uredinial pustules were bullate, with urediniospores emerging from a single pore in the pustule. Spiny cells lined the ostiole. With age, pustules broke open to release more spores. Urediniospores were obovate to oval and measured from 14 to 20 × 27 to 41 μm (17.1 × 32.2 μm average, n = 62). Spores were uniformly echinulate and contained a nearly hyaline cell wall measuring from 1 to 2 μm (1.5 μm average) in thickness. A portion of the 28S ribosomal subunit (GenBank Accession No. KC313888) and the internal transcribed spacer regions (KC313889) were amplified and sequenced from DNA extracted from urediniospores using primers LR6 and rust2inv (1) and ITS1-F and ITS4-B (2), respectively. Our ITS sequence had 99% identity to GenBank accession EF564164, Melampsoridium hiratsukanum. In September 2011, white alder leaves with similar symptoms were collected from a commercial nursery in Santa Barbara County, CA. The spore morphology matched the white alder sample previously collected in Santa Cruz County, CA, in 2010. At that time, pathogenicity assays were conducted on three 1-year-old, 61-cm white alder trees planted in 3.8-liter pots. Six detached leaves with visible rust pustules were rubbed gently onto both the apical and distal side of moistened leaves of the healthy alders. Each infected leaf was used to inoculate a total of 6 to 10 healthy leaves by rubbing two leaves per tree before moving to the next tree. Leaves on three additional white alder trees were rubbed with healthy leaves as controls. Trees were incubated in a dew chamber for 3 days in darkness at 24°C, then placed in a growth chamber at 22°C with a 12-h photoperiod. Twelve days after inoculation, small lesions were visible on a few of the leaf undersides of each inoculated tree. Not all inoculated leaves developed pustules. No lesions developed on the control trees. M. hiratsukanum has been reported in Canada, Europe, and eastern Asia (3). There are no published reports of this rust in the United States, but there is an unpublished specimen from white alder in the USDA Systematic Mycology Herbarium (BPI 028048) collected from California in 1931, which was identified as M. hiratsukanum by G. B. Cummins using morphological criteria. We are unaware if older specimens of this rust exist because we were unable to search other herbaria in the United States. To the best of our knowledge, this rust has been present in California since 1931, but has only recently been found causing disease in nursery plants. There have been no reports of the serious foliar disease symptoms on trees in California wild lands as have been reported in Europe, presumably due to dry summer and fall seasons in white alder's natural habitat. References: (1) M. C. Aime. Mycoscience 47:112, 2006. (2) M. Gardes and T. D. Bruns. Mol. Ecol. 2:113, 1993. (3) J. Hatula et al. Mycologia 101:622, 2009.

First Report of Camphor Tree (Cinnamomum camphora) as a Host of Phytophthora ramorum

Cinnamomum camphora (Lauraceae) is an evergreen shade tree grown in many parts of the United States, including California. From 2007 to 2011, an arborist working in a residential neighborhood in Mill Valley (Marin Co.) noticed several camphor trees with branch dieback and decline. Affected trees had patchy, irregular cankers on the branches and shoot blight. Cankers were black and most had horizontal fissures. Cankers were most abundant in the inside and lower portions of the canopies. In 2011, samples sent to Bartlett Tree Laboratory tested positive for Phytophthora sp. using the Agdia ELISA Phytophthora kit (Agdia, Elkhart, IN). In February 2009 and April 2011, camphor leaf samples were collected by Sacramento Co. inspectors during an annual nursery inspection for Phytophthora ramorum and submitted to CDFA. The normally bright green leaves were reddish with small necrotic spots surrounded by green halos. Camphor samples from Marin Co. were also collected and sent to CDFA in September 2011. An organism with coralloid coenocytic hyphae, chlamydospores, and ellipsoidal semi-papillate sporangia grew on CMA-PARP (4) from both Marin and Sacramento Co. samples. Morphologically, it matched the description of P. ramorum (3). rDNA sequences of the internal transcribed spacer (ITS) region of the Marin (GenBank KC473521) and Sacramento (KC473522) isolates, amplified using primers ITS1 and ITS4 (4), were 100% identical to P. ramorum by a BLAST query (AY038058). Microsatellite loci placed the Marin isolate in the NA1 clonal lineage, while the Sacramento isolate belonged to the NA2 lineage (2). Pathogenicity of both isolates was tested on 5 trees grown in 18.93-liter pots. Three leaves on each tree were inoculated with 6-mm agar plugs taken from the margin of 7-day-old cultures grown on V8 juice agar (V8). Leaves were wounded with a sterile pushpin and two colonized plugs of each isolate were covered with a freezer tube cap filled with sterile dH₂O and attached to the leaves with a pin-curl clip (4). Three branches of the same plants were wounded and inoculated with a 3-mm colonized agar plug for each isolate and secured with Parafilm. An equal number of leaves and stems were treated with uncolonized V8 plugs as controls. Plants were sprayed with dH₂O, covered in large plastic bags, and placed in a growth chamber at 18°C. After 4 days, the bags, caps, and plugs were removed from the leaves. Black lesions were seen 7 days after inoculation on most leaves and 10 to 14 days on inoculated branches. After 32 days, P. ramorum was isolated from leaf lesions and canker margins onto CMA-PARP. No Phytophthora spp. grew from the controls. The experiment was repeated once with similar results. Overall, leaf and stem lesions were larger with the NA2 lineage isolate than the NA1 lineage isolate, which is consistent with previous research (1). Leaf abscission was seen in 30% of the leaves inoculated with the NA2 lineage isolate but none of the NA1 or control leaves. To our knowledge, this is the first report of P. ramorum on camphor in nursery and landscape settings. Mill Valley is known for its mild temperatures and abundant summer fog. Optimal weather conditions likely led to the spread of P. ramorum from infected neighboring forest hosts to camphor in Mill Valley, rather than from an introduction of infected nursery plants. References: (1) E. Elliott et al. For. Pathol. 41:7, 2011. (2) E. M. Goss et al. Phytopathology 101:166, 2011. (3) S. Werres et al. Mycol. Res. 105:1155, 2001. (4) L. E. Yakabe et al. Plant Dis. 93:883, 2009.

First Report of Colletotrichum phormii Causing Anthracnose on New Zealand Flax in the United States

Phormium colensoi Hook.f. (syn. P. cookianum), New Zealand flax, (family Xanthorrhoeaceae) is popular in ornamental landscapes in the United States because of its sturdy blade-like foliage available in diverse colors. In February 2012, the Oregon State University Plant Clinic received three potted plants of P. colensoi 'Black Adder' from a commercial nursery in Santa Cruz County, California. The margins and midribs of several leaves had brown lesions that were variable in size, and fusiform to ellipsoidal in shape. Embedded in the lesions were black acervuli without setae that exuded salmon-colored spore masses under moist conditions. Conidia were hyaline, cylindrical to fusiform, straight to slightly curved, and 22.4 to 35.2 × 4.0 to 6.4 (average 24.7 × 4.9) μm. Based on morphology, the fungus was confirmed by USDA-APHIS National Identification Services to be Colletotrichum phormii (Henn.) D.F. Farr & Rossman (2). In March 2012, the California Department of Food and Agriculture Plant Pest Diagnostic Lab received additional samples from the same nursery lot (25% disease incidence) from which a similar fungus was recovered. rDNA sequences of the internal transcribed spacer (ITS) region from the California isolate (GenBank KC122681), amplified using primers ITS1 and ITS4 (2), were 100% identical to multiple species of Colletotrichum, including C. phormii by a BLAST query (JQ948446 through JQ948453). ITS sequence similarity alone is not sufficient to address Colletotrichum taxonomy and must be used in combination with host range and morphology (1). Pathogenicity of C. phormii (isolate CDFA986) was tested on three 'Black Adder' plants, which were inoculated with 6-mm agar plugs from a 14-day-old culture grown on half strength potato dextrose agar (PDA). Leaves were wound-inoculated along the midrib using colonized plugs (4). Five leaves per plant were inoculated with C. phormii plugs and five leaves per plant were treated with uncolonized PDA agar plugs as controls. Plants were sprayed with water and incubated in plastic bags at 22°C with a 12-h photoperiod. After 48 h, the bags and caps were removed and plants were kept under the same conditions. Two weeks later, water-soaked lesions had developed on the inoculated leaves. Lesions expanded along the midrib and became fusiform in shape after 21 to 28 days. C. phormii was isolated from lesion margins of all the inoculated leaves, but not from control leaves. This experiment was repeated once with similar results. Another Colletotrichum species, C. gloeosporiodes, also occurs on Phormium spp., but differs from C. phormii in morphology and symptom expression. Subsequent nursery and landscape surveys showed that anthracnose caused by C. phormii occurs on several P. colensoi cultivars as well as on P. tenax in five California counties including Santa Cruz, Yolo, Sacramento, San Luis Obispo, and Solano. C. phormii is also reported to infect P. colensoi and P. tenax in New Zealand, Europe, the United Kingdom, Australia, and South Africa (2,3). To our knowledge, this is the first report of C. phormii causing anthracnose on Phormium in North America. This disease could impact the American nursery trade and New Zealand flax production due to crop loss and increased production costs for pest management. References: (1) J. Crouch et al. Mycologia 101:648, 2009. (2) D. F. Farr et al. Mycol. Res. 110:1395, 2006. (3). H. Golzar and C. Wang. Australas. Plant Pathol. 5:110, 2010. (4) L. E. Yakabe et al. Plant Dis. 93:883, 2009.

First Report of Candidatus Liberibacter asiaticus Associated with Citrus Huanglongbing in California

Huanglongbing (HLB), also known as citrus greening, is one of the most destructive citrus diseases worldwide and is seen as a major threat to the multimillion dollar citrus industry in California. The vector of the two bacterial species associated with this disease, Candidatus Liberibacter asiaticus and Ca. L. americanus, is the Asian citrus psyllid (ACP), Diaphorina citri (4). ACP was detected in California in August of 2008 and has since been detected in nine counties in southern California. As part of a long term survey and testing program for the ACP carrying the HLB associated bacteria, groups of ACP nymphs and adults were submitted to the Jerry Dimitman Citrus Research Board/Citrus Pest and Disease Prevention Program Laboratory in Riverside, CA. In March 2012, DNA extracted using the Qiagen MagAttract 96 DNA plant kit (QIAGEN Inc., 27220 Turnberry Lane, Suite 200, Valencia, CA 91355) from a group of three ACP adults tested positive for Ca. L. asiaticus with the real-time PCR assay developed by Li et al. (4). ACP adults were collected from a residential citrus tree located in the Hacienda Heights area of Los Angeles County, California. The approximately 1.8 meter tall lemon tree had 23 graft unions, primarily of lemon (Citrus × meyeri) and pomelo (Citrus maxima) varieties. The tree was unthrifty, with yellow shoots and chlorotic leaves. Symptoms on the lemon and pomelo leaves included asymmetrical blotchy mottling, yellowing, and corking of the leaf veins, with the blotchy mottle more prominent in the pomelo leaves. Pomelo leaves appeared crinkled along the thickened veins. Lemon leaves had yellow veins and a few had islands of green tissue completely surrounded by yellow tissue. The entire tree was removed, cut into sections, bagged, and transported to the CDFA Plant Pest Diagnostics Lab for analysis. Two hundred milligrams of petiole and midrib tissue from leaves apical to each graft union was collected, and DNA from each sample was extracted using the Qiagen DNeasy plant mini kit. DNA extracted from both lemon and pomelo leaves tested positive for Ca. L. asiaticus using real-time PCR (4). A 1,160-bp fragment of the 16S ribosomal RNA gene was amplified from the insect and plant DNA extracts using conventional PCR with primers Ol1 and OI2c (2). A 703-bp fragment of the β-operon gene was amplified from the insect and plant extracts with primers A2 and J5 (1). The 16S rDNA fragments from the insect and plant respectively (GenBank Accession Nos. JX430434 and JX455745) and the β-operon fragments (JX430435 and JX455746) showed 100% identity with the corresponding regions of Ca. L. asiaticus (CP001677) strain psy 62. Our 16S rDNA sequence showed 98% identity with Ca. L. africanus (EU921620), 97% identity with Ca. L. solanacearum (HM246509), and 96% with Ca. L. americanus (FJ036892). In response to the detection of HLB, a 241 km2 quarantine area around the detection site was established. Surveys for ACP and symptomatic host plants within the HLB quarantine area are ongoing. To date, there have been no additional positive detections. In the United States, HLB was first detected in Florida in 2005 (4) and in Texas in January of 2012 (3). To our knowledge, this is the first confirmed report of Ca. L. asiaticus associated with HLB in California. References: (1) A. Hocquellet et al. Mol. Cell. Probes 13:373, 1999. (2) S. Jagoueix et al. Mol. Cell. Probes 10:43, 1996. (3) M. Kunta et al. Phytopathology 102:S4.66, 2012. (4) W. Li et al. J. Microbiol. Methods 66:104, 2006.

First Report of Phytophthora ramorum Causing a Leafspot on Loropetalum chinense, Chinese Fringe Flower in California

Chinese fringe flower is a popular landscape plant in California for its red evergreen foliage and its showy red flowers in the spring. In April 2007, a sample was submitted to the California Department of Food and Agriculture diagnostic laboratory from Sacramento County as part of an inspection of a nursery for Phytophthora ramorum. A sample was taken from Loropetalum chinense because the inspector noticed very small spots and defoliation in the crop, even though P. ramorum was not detected in previous samples sent to the lab with similar symptoms. Six 5-mm² pieces of the leaves were placed on CMA-PARP (1) medium as part of our standard nursery screening, even though no lesions were seen. An organism with coralloid coenocytic hyphae, chlamydospores, and ellipsoidal semi-papillate sporangia matching the description of P. ramorum (2) grew into a snowflake-shaped colony from two pieces. On closer inspection of the leaves, small green lesions of approximately 3 to 5 mm wide were visible, especially when the leaves were backlit. For sporangial production, a 6-mm plug was transferred from the colony margin of the isolate onto V8 juice agar (V8). Sporangia, produced on V8 plugs incubated in dH₂0 for 2 days, were from 41 to 61 × 23 to 32 μm (48.7 × 29.3 μm average) with a length to breadth ratio from 1.3 to 2.0 (average 1.7). Chlamydospores on CMA-PARP were 36.7 to 60.1 μm (49.1 μm diameter average). From 2008 to 2011, similar symptoms were found on L. chinense from Contra Costa, San Joaquin, and Los Angeles Counties. The same organism was isolated from these infected plants. To confirm pathogenicity on L. chinense, five nursery-grown plants in 3.78-L pots were inoculated with three isolates each. Plants were inoculated with 6-mm plugs taken from the margin of a 7- to 10-day old culture grown on V8. Plant leaves were wounded with a sterile pushpin and two colonized plugs were covered with a freezer tube cap filled with sterile dH₂O and attached to the underside of the leaves with a sterile pin-curl clip (4). Inoculated plants were sprayed with water, covered with plastic bags, and incubated for 2 days, when bags and plugs were removed. Four leaves per isolate were inoculated on each plant and four leaves per plant were treated similarly with uncolonized V8 plugs as a control. Plants were incubated for 12 to 14 days at 18°C (16-h photoperiod) when lesions were visible and some of the leaves began to abscise. P. ramorum grew from each lesion produced on inoculated leaves and no Phytophthora spp. grew from the control leaves when isolated onto CMA-PARP. Inoculations were repeated with similar results. The internal transcribed spacer region (ITS) of rDNA was amplified and sequenced from the isolates using ITS1 and ITS4 primers as described by White et al. (3). BLAST analysis of the sequenced amplicons (GenBank JQ361743 through JQ361745) showed 100% identity with the ITS sequence of P. ramorum (GenBank AY594198). P. ramorum is a quarantine pathogen with many hosts (2,4). Leaf spots on L. chinense caused by P. ramorum are inconspicuous and missing this disease during nursery inspections could lead to unintended spread to neighboring host plants. References: (1) S. N. Jeffers and S. B. Martin. Plant Dis. 70:1038, 1986. (2) S. Werres et al. Mycol. Res. 105:1155, 2001. (3) T. J. White et al. Page 315 in: PCR Protocols. A Guide to Methods and Applications. Academic Press, San Diego, CA, 1990. (4) L. E. Yakabe et al. Plant Dis. 93:883, 2009.

First Report of Leaf Spot Caused by Phytophthora taxon Pgchlamydo on Evergreen Nursery Stock in California

As part of the Phytophthora ramorum testing program from 2005 through 2007, a Phytophthora sp. was isolated on PARP-CMA medium (4) at the CDFA lab in Sacramento, CA, from the margin of necrotic spots and tissue suffering from dieback on Arctostaphylos sp. (manzanita), Camellia spp., Laurus nobilis (bay), Buxus sempervirens (boxwood), Rhododendron sp., Arbutus unedo (strawberry tree), and Sequoia sempervirens (coast redwood). Isolates were collected from Shasta, Contra Costa, San Diego, Solano, Santa Cruz, Alameda, Sacramento, San Joaquin, Monterey, and Los Angeles Counties. Isolates from A. unedo tissue on PARP medium produced apapillate, obovate sporangia 25 to 80 × 15 to 40 μm (48.0 × 26.9 μm average) and a few isolates produced intercalary and terminal chlamydospores at 22°C (30 to 46 μm diameter, 38.9 μm average). The internal transcribed spacer region (ITS) of rDNA was amplified from four isolates using ITS1 and ITS4 primers as described by White et al. (3) and the amplicons sequenced (GenBank Accession Nos. JQ307188 through JQ307191). BLAST analysis of the amplicons showed 99 to 100% identity with the ITS sequence of Phytophthora taxon Pgchlamydo from forest streams in Oregon (GenBank Accession No. HM004224) (1). Pathogenicity tests were performed on B. sempervirens, C. sasanqua, L. nobilis, and A. unedo. Five plants of each species were inoculated with 6-mm plugs taken from the margin of a 7- to 10-day-old culture grown on V8 juice agar. Plant leaves were wounded with a sterile pushpin and two agar plugs were covered with a freezer tube cap filled with sterile dH₂O and clipped to the underside of the leaves with a sterile pin-curl clip (4). Inoculated plants were sprayed with water, covered with plastic bags, and incubated for 2 days, when bags and plugs were removed. Five leaves of each isolate plus five control plugs using V8 juice agar alone were inoculated on each plant. Plants were incubated for 12 days at 18°C (16-h photoperiod). Lesions formed on all inoculated plants, ranging in size from approx. 1 mm on B. sempervirens to 9.2 × 10.9 mm average on A. unedo. The lesions on A. unedo grew into and caused the mid-vein to blacken. The lesion sizes on camellia and bay were larger than those formed on B. sempervirens and smaller than those formed on A. unedo, with most lesions surrounded by a dark ring. Phytophthora taxon Pgchlamydo is associated with leaf lesions on rhododendron and dieback of yew in Minnesota (2). To our knowledge, this is the first report of Phytophthora taxon Pgchlamydo causing disease in camellia, bay, strawberry tree, and boxwood in California. Phytophthora taxon Pgchlamydo causes damage that is indistinguishable from the quarantine pest, P. ramorum (4). References: (1) P. W. Reeser et al. Mycologia 103:22, 2011. (2) B. W. Schwingle and R. A. Blanchette. Plant Dis. 92:642, 2008. (3) T. J. White et al. PCR Protocols: A Guide to Methods and Applications. M. A. Innis et al., eds., Academic Press, San Diego, 1990. (4) L. E. Yakabe et al. Plant Dis. 93:883, 2009.

First Report of Neofusicoccum nonquaesitum Causing Branch Cankers on Giant Sequoia (Sequoiadendron giganteum) in North America

Between 2001 and 2007, samples from three California native plants showing canker symptoms were submitted to the California Department of Food and Agriculture's Plant Pest Diagnostics laboratory. Giant sequoia (Sequoiadendron giganteum) and coast redwood (Sequoia sempervirens) showed branch cankers and dieback, whereas tanoak (Lithocarpus densiflora) had bleeding bole cankers. Samples were collected from mature trees in private landscapes in El Dorado, Sacramento, and Alameda counties in California. A fungus was isolated on one-half strength acidified potato dextrose agar (APDA) from the canker margins of all three hosts. Colonies were moderately fast growing, initially white, later turning olivaceous black. Pycnidia developed singly or in small groups and contained conidia that measured 18 to 29 × 6 to 8 μm (average 21.5 × 6.8 μm). Conidia were aseptate, hyaline, and fusiform, with truncate bases. rDNA sequences of the internal transcribed spacer (ITS) region of the isolates (GenBank JQ282157 through JQ282159), amplified using primers ITS1 and ITS4 (2), were 100% identical to the holotype isolate of Neofusicoccum nonquaesitum Inderb., Trouillas, Bostock & Michailides (1) by a BLAST query (GenBank GU251163). Pathogenicity of the N. nonquaesitum isolate from giant sequoia (CDFA4) was tested on five saplings using cultures grown on APDA for 14 days. A single wound was made approximately 2 cm above the soil line on the cambium of each plant using a 3-mm cork borer. One 3-mm colonized agar plug was placed on each wound and secured with Parafilm. Plugs of APDA were placed onto wounds of five plants as controls. All plants were kept in a growth chamber at 23°C with a 12-h photoperiod. After 4 days, Parafilm was removed to reveal dark brown cankers measuring 12 to 43 mm long on the inoculated plants. Fourteen days after inoculation, cankers were black, sunken, and measured 79 to 117 mm (average 91.4 mm) long. Most of the inoculated plants were wilted with chlorotic to necrotic foliage. Mature pycnidia with cirri developed in most of the cankers. N. nonquaesitum was reisolated on APDA from all of the cankers. No symptoms developed on the control plants. The experiment was repeated once with similar results. Botryosphaeria dothidea, also in the Botryosphaeriaceae, has been reported to cause similar cankers on giant sequoia and coast redwood in California (3). However, rDNA sequencing of the ITS region of this isolate obtained from the American Type Culture Collection (ATCC 60344) (GenBank JQ284384) showed it matched the type specimen of Neofusicoccum australe (GenBank GU251219), not our isolate. To our knowledge, this is the first report of N. nonquaesitum as a pathogen of giant sequoia in North America. This study expands the host range of N. nonquaesitum from almond (Prunus dulcis), California bay (Umbellularia californica), and blueberry (Vaccinium spp.) (1) to include giant sequoia, coast redwood, and tanoak, which are economically important trees in California forests and landscapes. References: (1) P. Inderbitzin et al. Mycologia 102:1350, 2010. (2) T. J. White et al. Page 315 in: PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, CA, 1990. (3) J. J. Worrall et al. Plant Dis. 70:757, 1986.

First Report of Fusarium Wilt Caused by Fusarium oxysporum f. sp. passiflorae on Passion Fruit in North America

Passiflora edulis Sims f. edulis, known as purple passion fruit, is a woody, perennial vine that is grown for its attractive two-part flower and its purple, edible fruit (4). In November 2009, passion fruit vines were collected during a regulatory nursery inspection in Santa Barbara County and submitted to the California Department of Food and Agriculture Plant Pest Diagnostics Laboratory. Nearly 100% of the plants inspected, all of which were approximately 1.25 m tall, appeared stunted, defoliated, and severely wilted. Dark brown vascular discoloration was present in the roots and lower stems of the plants. A pinkish violet Fusarium oxysporum colony containing chlamydospores, multiseptate macroconidia, and microconidia formed on monophialidic conidiophores was consistently isolated from roots and stems onto half-strength acidified potato dextrose agar (aPDA). All further experiments were done with an isolate obtained from a single conidium. A portion of the translation elongation factor gene (TEF-1α) was amplified and sequenced with primers ef1 and ef2 from our isolate (GenBank No. JF332039) (3). BLAST analysis of the 615-bp amplicon with the FUSARIUM-ID database showed 99% similarity with a F. oxysporum passion fruit isolate from Australia (NRRL 38273) (3). To confirm pathogenicity, washed roots of four-leaf stage seedlings approximately 10 cm tall were submerged in a conidial spore suspension (10⁶ spores/ml) for 15 min. The conidial suspension was prepared by flooding 10-day-old cultures grown on aPDA medium with sterile distilled water. Seven seedlings were inoculated and planted in 10-cm² pots and kept in a 25°C growth chamber with a 12-h photoperiod. Seven seedlings were mock inoculated with sterile water. After 3 weeks, four of the seven inoculated plants had leaves with yellow veins and discolored roots and had partially defoliated. Two of the four symptomatic plants also had brown stem cankers. F. oxysporum grew from the isolated roots and stems of all the inoculated plants. F. oxysporum did not grow from root and stem pieces from the water-dipped plants and the plants remained asymptomatic. Inoculations were repeated on plants approximately 15 cm tall with F. oxysporum growing from roots and stem pieces of all inoculated plants. Symptoms of yellow veins and root necrosis were not observed until 4 weeks after inoculation. Fusarium wilt caused by F. oxysporum f. sp. passiflorae is a significant disease of P. edulis f. edulis in Australia. The disease has also been reported in South Africa, Malaysia, Brazil, Panama, and Venezuela; but it is unclear as to whether the symptoms were caused by Fusarium wilt or Haematonectria canker (1). Banana poka (P. mollissima), P. ligularis, and P. foetida are also susceptible hosts (2). To our knowledge, this is the first report of Fusarium wilt caused by F. oxysporum f. sp. passiflorae on passion fruit in North America. Passion fruit is not commercially produced for consumption in California so the economic importance of this disease appears to be limited to nursery production and ornamental landscapes. The grower of the California nursery stated that the infected passion fruit plants had been propagated on site from seed. The source of inoculum at this nursery remains unknown. References: (1) I. H. Fischer and J. A. M. Rezende. Pest Tech. 2:1, 2008 (2) D. E. Garder. Plant. Dis. 73:476, 1989. (3) D. M. Geiser et al. Eur. J. Plant Pathol. 110:473, 2004. (4) F. W. Martin et al. Econ. Bot. 24:333, 1970.

First Report of Ramularia didyma Causing a Leaf Spot on Ranunculus (Ranunculus asiaticus) Hybrids in California

Ranunculus or Persian buttercups (Ranunculus asiaticus) are colorful, cool-season perennials or annuals grown as landscape bedding plants and for field-grown bulb and cut flower production in mild winter climates. In March of 2008, tan-to-brown lesions were observed on the foliage of containerized ranunculus growing in a greenhouse at a production and retail nursery in coastal San Mateo County, CA. Approximately 15% of the approximately 150 cv. Bloomingdale mixed shade ranunculus plants had leaf spot symptoms. Symptomatic plants were generally clustered together on two benches, with a double-flowered purple cultivar with picotee markings having the highest disease incidence and severity. Angular to round, necrotic lesions ranged between 0.25 and 1.0 cm in diameter and were often surrounded by chlorotic tissue. Whitish sporulation was observed on abaxial and adaxial sides of the larger lesions. Conidiophores were hyaline, aseptate, measured 45 to 75 × 3 to 5 μm (56 × 3.7 μm average), and were produced in fascicles on the leaf surface. One-celled fusiform to cylindrical conidia measured 22.5 to 30.0 × 9.0 to 15 μm (25.4 × 11.9 μm average) and two-celled conidia measured 26.0 to 47.5 × 10 to 14 μm (35.3 × 12.1 μm average). Most conidia were hyaline, although a few were pale brown. Morphologically, the fungus matched the description of Ramularia didyma Unger (1). Small (3-mm²) pieces were taken from the margin of the lesion, disinfested with 0.6% sodium hypochlorite for 2 min, and placed at room temperature on carrot piece agar. Colonies were white and grew slowly to approximately 3.5 cm in 25 days. No conidia were produced in culture. To conduct pathogenicity tests, the foliage of nine mixed-color ranunculus plants grown from tubers for 7 weeks at 16°C in a growth chamber were sprayed with an aqueous suspension of mycelia. Inoculum was produced by grinding five, 3.5-cm colonies on carrot piece agar in 120 ml of water with a mortar and pestle. The foliage of an equal number of plants was sprayed with water. Plants were incubated in a dew chamber at 20°C for 48 h in the dark and then moved into a growth chamber with a 12-h photoperiod where relative humidity was maintained at ~95% by placing plants over a tray of water and covering each plant group with a plastic tent. Small, angular spots developed on approximately half of the inoculated plants 20 days later when the fungus was reisolated from the lesions. No symptoms were observed on the noninoculated control plants. Sporulation was observed on diseased lesions following misting of plants and incubation in sealed plastic bags for an additional week. Pathogenicity tests were repeated with mycelia with similar results. Sequence of the internal transcribed spacer regions of the rDNA was deposited into GenBank (Accession No. HQ442297). The sequence matched R. coleosporii and R. carthami with 96% identity. R. didyma has been reported to cause a leaf spot on Ranunculus spp. in the United States (Delaware, Iowa, Indiana, Maryland, New York, and Vermont). To our knowledge, this is the first confirmed report of R. didyma on Ranunculus asiaticus in California. Introduction of this pathogen into commercial production fields could cause significant economic loss. The closest large-scale production fields are located approximately 430 miles south of San Mateo County near Carlsbad, CA where more than 50 acres of ranunculus are grown for cut flower and tuber production. Reference: (1) J. B. Ellis and B. M. Everhart. J. Mycol. 1:79, 1885.

First Report of Verticillium Wilt on Field-Grown Cosmos Caused by Verticillium dahliae in California

Cosmos (Cosmos bipinnatus Cav.) is an annual that is grown for cut flowers or as a landscape bedding plant. In late July 2009, cosmos plants were collected from a 0.4-ha field in Santa Barbara County, CA and submitted to the California Department of Food and Agriculture's Plant Pest Diagnostics Laboratory. Plants showed symptoms of chlorosis, wilting, necrosis, and death. Symptomatic plants comprised approximately 50% of the crop. Roots and stems appeared entirely discolored. Pieces (4 mm³) were taken from the edges of the discolored tissue of roots and stems, surface sterilized in 0.6% NaOCl for 2 min, and placed onto one-half-strength acidified potato dextrose agar (APDA). Fungal colonies consisted of fine, hyaline hyphae with verticillate conidiophores producing hyaline conidia, measuring 4.2 to 7.0 × 1.8 to 3.0 μm (5.13 × 2.44 μm average), in slimy masses. Microsclerotia (30.0 to 137.5 × 15.0 to 60.0 μm, 57.6 × 33.7 μm average) formed after 1 week in culture, causing the center of the colony to darken. Morphological characteristics were consistent with those of Verticillium dahliae (2). The internal transcribed spacer region (ITS) of rDNA was amplified for one isolate from cosmos using ITS1 and ITS4 primers as described by White et al. (3), and the amplicon was sequenced (GenBank Accession No. GU99602). BLAST analysis of the 455-bp amplicon showed 100% identity with the ITS sequence of V. dahliae from cosmos in Italy (GenBank Accession No. GQ130129). Pathogenicity of the California cosmos isolate of V. dahliae was determined by inoculating 10 1-month-old seedlings (each approximately 20 cm high) of C. bipinnatus 'Sensation Mix' with this isolate. Plants were inoculated with spores harvested by flooding 2-week-old cultures of V. dahliae grown on APDA medium with sterile distilled water. Plant root tips were trimmed and submerged in a spore suspension (1.3 × 10⁶ spores/ml) for 5 min. Ten plants were dipped in water as the negative control treatment. Plants were then planted in a commercial potting mix in 10-cm-diameter pots and kept in a growth chamber at 25°C with a 12-h photoperiod. Inoculated plants were chlorotic and wilted when root and stem isolations were performed 1 month after inoculation. V. dahliae grew from stems and roots of 7 and 2 of the 10 inoculated plants, respectively. The inoculation experiment was repeated on six 5-month-old plants with similar results, except V. dahliae was isolated from the roots and stems of six and five plants, respectively. No symptoms developed on plants dipped in water, and Verticillium spp. did not grow from isolated root or stem pieces from the noninoculated plants in either experiment. On the basis of morphological and ITS sequence information, the fungus was identified as V. dahliae. V. dahliae is an economically important pathogen with a wide host range worldwide including cosmos in Italy (1). The affected field in California had a history of vegetable and flower seed crops, as well as vegetables for consumption. Infection of cosmos may have been from soilborne microsclerotia from previous susceptible crops. To our knowledge, this is the first report of Verticillium wilt on cosmos in California. References: (1) A. Carlucci et al. Plant Dis. 93:846, 2009. (2) D. L. Hawksworth and P. W. Talboys. No. 256 in: Descriptions of Pathogenic Fungi and Bacteria. CMI, Kew, Surrey, UK, 1970. (3) T. J. White et al. PCR Protocols: A Guide to Methods and Applications. M. A. Innis et al., eds. Academic Press, San Diego, 1990.

First Report of Embellisia hyacinthi Causing a Leaf Spot and Bulb Skin Spot Disease on Scilla peruviana in California

The genus Scilla (Hyacinthaceae) includes more than 50 species of perennial, flowering bulbs grown in landscapes worldwide. In December 2000 and May 2009, an unknown leaf spot disease on Scilla peruviana was submitted to the California Department of Food and Agriculture Plant Pest Diagnostic Lab. Samples were collected during routine phytosanitary inspections of production fields in Santa Cruz County in 2000 and Monterey County in 2009. The disease was detected before plants flowered in one field at each location each year and appeared to have a scattered distribution. Foliar spots were large, elliptical to oblong with grayish black centers and brown margins. Yellow halos surrounded many of the spots. Examination of the bulb material revealed small necrotic patches on the outer bulb scales. A rapidly growing fungus was isolated on one-half-strength acidified potato dextrose agar (APDA) from the sporulating leaf spots and necrotic patches on the bulbs. The colonies were greenish gray and became dark olivaceous with age. Dictyospores, which formed on simple to branched, geniculate conidiophores, were oblong, fusiform or obclavate and usually had a triangular apical cell. They were initially hyaline, turning olivaceous brown with age. Conidia measured 14 to 39 × 8 to 13 μm (average 24.6 × 9.9 μm) typically with two to four (but up to seven) thick, transverse septa and one to two longitudinal septa. Morphologically, the fungus matched the description of Embellisia hyacinthi de Hoog & Miller (1,3). To confirm pathogenicity, four leaves of four S. peruviana plants were inoculated by taking colonized mycelial plugs from 2-week-old cultures and placing them in a plastic screw-cap lid filled with sterile water. The water plus mycelial plug suspension in the lid was then clipped to the adaxial side of a pushpin-wounded leaf (4). Plants were placed in a dark dew chamber at 20°C for 48 h and then moved to a growth chamber at 20°C with a 12-h photoperiod. After 48 h, the clips, caps, and plugs were removed. An equal number of control plants were wounded and mock inoculated with noncolonized APDA agar plugs and the experiment was repeated. Leaf lesions were visible 3 days after clip removal and expanded to an average of 26 × 10 mm, 14 days after inoculation. Sporulation was observed in the lesions after 5 to 7 days and the fungus was isolated from all inoculated leaves. No symptoms developed on the control leaves. DNA sequencing of the internal transcribed spacer region of the isolate (GenBank Accession No. HQ425562) using primers ITS1 and ITS4 matched the identity of E. hyacinthi (2,4). E. hyacinthi has been reported as a foliar and bulb pathogen on Hyacinthus, Freesia, and Scilla in Japan and Europe including Great Britain. Bulbs infected with E. hyacinthi are generally less sound and less valuable than noninfected bulbs (1). To our knowledge, this is the first report of the disease on S. peruviana in California. References: (1) G. S. de Hoog and P. J. Muller. Neth. J. Plant Pathol. 79:85, 1973. (2) B. Pryor and D. M. Bigelow. Mycologia 95:1141, 2003. (3) E. Simmons. Mycotaxon 17:216, 1983. (4) L. E. Yakabe et al. Plant Dis. 93:883, 2009.

First Report of Botrytis hyacinthi on Pineapple Lily in California

Pineapple lily (Eucomis vandermerwei) is grown for its exotic-looking flower spike that looks like a small pineapple. It is used as an accent plant in the garden or for its long-lasting cut flowers. In late November 2007, plant foliage was submitted to the California State Diagnostic Laboratory by a commercial grower for phytosanitary inspection before shipment of bulbs to Europe. Leaves had wet, brown, elliptical spots of 1 to 2 cm long, some with yellow halos. The interior of the older spots was pale brown and papery. Conidiophores typical of Botrytis spp. were observed on the abaxial side of the leaf in the interior of the older spots. Isolations on half-strength acidified potato dextrose agar (APDA) yielded a grayish mycelium with conidiophores developing on the plant tissue only. The agar was grayish yellow, especially when viewed from the underside. Conidiophores measured 275 to 650 μm × 15 to 20 μm (411.2 × 15.5 μm average). Conidia were light brown, subglobose to broadly ellipsoidal, and measuring 10 to 15 × 13 to 20 μm (11.8 × 16.2 μm average). Scattered, black sclerotia measuring 335 to 1,007 × 518 to 1,079 μm (668.9 × 743.9 μm average) formed on the medium after approximately 7 days. Pathogenicity was confirmed by inoculating four Eucomis spp. plants with one inoculation per leaf, four leaves per plant. Each leaf was wounded with a sterile pushpin and three agar plugs from 4-day-old cultures were placed in a plastic screw-cap lid filled with sterile water and clipped onto each wound. Plants were misted with water, covered with a plastic bag, and placed in a growth chamber at 16°C (12-h photoperiod) for 48 h after which the agar plugs and caps were removed. An equal number of plants were wounded and mock inoculated with APDA. Pathogenicity experiments were repeated. After 14 days, all inoculated leaves had lesions and the fungus was reisolated. No Botrytis spp. were isolated from the mock-inoculated plants. Our sequence of the intergenic spacer regions of one isolate, GenBank FJ10809, matched Botrytis hyacinthi sequence AJ716297 with 99.8% identity. Using molecular (3) and morphological characters (1,4), the pathogen was identified as B. hyacinthi, the cause of fire disease in hyacinths. This pathogen was described previously on hyacinths in Washington State (2), the Netherlands (4), and the United Kingdom (2). The importance and economic impact of this disease appears to be limited because it has only been observed on mature or senescing foliage and not bulbs. To our knowledge, this is the first report of B. hyacinthi causing a leaf spot on pineapple lily. References: (1) C. J. Gould et al. Plant Dis. Rep. 42:534, 1958. (2) W. C. Moore. Page 14 in: Diseases of Bulbs. Bull. No. 117. Minist. Agric. Fish. London, 1939. (3) M. Staats et al. Mol. Biol. Evol. 22:333, 2005. (4) J. Westerdijk and F. H. Van Beyma Thoe Kingma. Meded. Phytopathol. Lab. "Willie Commelin Scholten" 12:15, 1928.

First Report of Downy Mildew Caused by Peronospora trigonellae on Fenugreek in the United States

Fenugreek (Trigonella foenum-graecum) is a member of the Fabaceae family and is grown worldwide for culinary and medicinal purposes. The leaves are used as an herb while the seeds are used whole, ground as a spice, or germinated and used as sprouts. In November 2008, a fenugreek plant exhibiting leaf spotting and severe stunting was submitted to the CDFA Plant Pest Diagnostics Laboratory from the Los Angeles County Plant Diagnostic Laboratory. The county had received the sample from a homeowner who reported severe dieback of the fenugreek in his backyard planting. The fenugreek is grown by the resident as an annual and is propagated each year from the previous crop's seed. The seed was originally obtained from a local ethnic grocery store in Lakewood, CA. The homeowner stated that he had noticed symptoms for a number of years and that they seemed especially severe during the winter months. The adaxial surfaces of the leaves exhibited small chlorotic spots often at the leaf margins, while the abaxial surfaces exhibited a grayish violet, felty growth. Conidiophores found on the underside of the leaves branched dichotomously 6 to 10 times and were terminally forked. Conidiophores measured 280 to 525 μm (average 420 μm) with slightly swollen bases (7.5 to 10 μm broad). Conidia were slightly pigmented, oblong to ellipsoid, and measured 23 to 33 × 18 to 23 μm (average 27.8 × 20.3 μm). Globose oospores with verruculose walls measured 30 to 40 μm in diameter (average 36.1 μm) and were found embedded in the leaf tissue of older lesions. The pathogen was identified morphologically as Peronospora trigonellae Gaum. (3). Sequences of a portion of the rDNA, including the internal transcribed spacer regions, were obtained using primers DC6 and ITS6 (1). Sequence data for P. trigonellae had not previously been entered into GenBank and no identity was obtained. Pathogenicity experiments attempted by spraying healthy fenugreek seedlings with conidial suspensions were unsuccessful, presumably because of the age of the inoculum. Since fenugreek is not commercially grown in California, the economic importance of this disease is limited. Although P. trigonellae has been reported on fenugreek in Algeria, India, Pakistan, and the United Kingdom (2-4), to our knowledge, this is the first report of its occurrence in California and the United States. A specimen of P. trigonellae has been deposited in the U.S. National Fungus Collection (BPI 879153). References: (1) D. E. L. Cooke et al. Fungal Genet. Biol. 30:17, 2000. (2) D. F. Farr et al. Fungal Databases. Systematic Mycology and Microbiology Laboratory. Online publication. ARS, USDA, 2009, (3) E. A. Gaumann. Beitr. Kryptogamenflora Schweiz 5:216, 1923. (4) D. R. Jones et al. Plant Pathol. 56:891, 2007.

Identification and Frequency of Phytophthora Species Associated with Foliar Diseases in California Ornamental Nurseries

Numerous ornamental nurseries in 32 California counties were surveyed for leaf spots as part of the California Department of Food and Agriculture mandated surveys targeting Phytophthora ramorum. Tissue collected during the 2005 and 2006 surveys was initially screened by a Phytophthora-specific enzyme-linked immunosorbent assay. All positives samples were further tested using polymerase chain reaction to determine if P. ramorum was present. P. ramorum was detected in 1% of the total number of samples taken during the surveys. A total of 377 isolates were identified as species of Phytophthora other than P. ramorum, and their identity was determined by internal transcriber spacer (ITS) sequences. Subsets of the putative ITS-species were further verified using accepted morphological characters. Thirteen species of Phytophthora were found: P. cactorum, P. cambivora, P. citricola, P. citrophthora, P. cryptogea, P. foliorum, P. gonapodyides, P. hibernalis, P. nemorosa, P. 'Pgchlamydo', P. pseudosyringae, P. syringae, and P. tropicalis. P. syringae and P. citricola made up 55% of the total number of isolates. Species thought to be strictly forest pathogens, P. nemorosa and P. pseudosyringae, each made up less than 4% of the isolates. To test pathogenicity of acquired isolates, subsets of different species of Phytophthora were inoculated onto leaves of selected host plant genera. Of the 66 pathogen-host genera combinations tested, 44 resulted in lesion formation. Disease symptoms appeared as dark, water-soaked lesions with irregular margins and were similar among Phytophthora species.

First Report of Downy Mildew on Field-Grown Sweet Basil Caused by a Peronospora sp. in San Diego County, California

Sweet basil (Ocimum basilicum) is a culinary herb grown in fields and greenhouses in California. In August of 2008, samples were submitted to the San Diego County Plant Diagnostic Laboratory with a grayish brown, downy growth that covered areas of the abaxial side of the leaf. Early symptoms included leaf chlorosis followed by the appearance of scattered grayish brown conidia and conidiophores in the chlorotic areas. Conidiophore emergence progressed to a grayish brown, velvety growth with some of the chlorotic areas becoming necrotic. Similarly affected plants were submitted to the laboratory from another field 32 km (20 miles) away in the same county. Both fields were drip irrigated and located in inland valleys. Approximately 50 to 60% of the plants were symptomatic. Conidiophores, on the abaxial side of the leaves that were characteristic of Peronospora, branched dichotomously three to five times and measured 390 to 1,100 × 2.5 to 7.0 μm (675.6 × 4.9 μm average). Light brown, globose to ellipsoidal conidia measured 20 to 34 × 18 to 26 μm (26 × 22 μm average). To confirm pathogenicity, three basil plants in 10.2-cm (4-inch) pots were sprayed with a suspension of 4.5 × 10⁵ conidia/ml and incubated in a dew chamber at 20°C for 48 h in the dark. Three noninoculated plants were sprayed with water. Plants were then placed in a growth chamber at 18°C with a 16-h photoperiod. Relative humidity was maintained near 95% by placing the plants over a tray of water and covering each group with a plastic tent. Signs of grayish brown, downy growth were seen approximately 14 days after inoculation. Pathogenicity experiments were repeated once. No symptoms developed on plants sprayed with water. Sequence of the intergenic spacer regions and 5.8S gene was obtained from a sample collected in one field, through amplification with primers DC6 and ITS4 and sequencing with primers ITS6 and ITS4 (2). The sequence (Accession No. FJ436024) from the field sample was identical to GenBank Accession No. AY884605 that represented a Peronospora sp. from basil in Switzerland. On the basis of morphological and sequence information, the Peronospora sp. from San Diego County is most likely the same Peronospora sp. that was identified from sweet basil in Switzerland, Italy (1), and South Africa (4), as well as coleus in New York and Louisiana (3). The basil Peronospora sp. has been shown to be present in seed (1). Since both growers purchased their seed from the same supplier, seeds could have been a possible inoculum source. To our knowledge, this is the first report of a downy mildew on sweet basil in California. References: (1) L. Belbahri et al. Mycol. Res. 109:1276, 2005. (2) D. E. L. Cooke et al. Fungal Genet. Biol. 30:17, 2000. (3) M. L. Daughtrey et al. Plant Dis. 90:1111, 2006. (4) A. McLeod et al. Plant Dis. 90:1115, 2006.

Standardizing the nomenclature for clonal lineages of the sudden oak death pathogen, Phytophthora ramorum

Phytophthora ramorum, the causal agent of sudden oak death and ramorum blight, is known to exist as three distinct clonal lineages which can only be distinguished by performing molecular marker-based analyses. However, in the recent literature there exists no consensus on naming of these lineages. Here we propose a system for naming clonal lineages of P. ramorum based on a consensus established by the P. ramorum research community. Clonal lineages are named with a two letter identifier for the continent on which they were first found (e.g., NA = North America; EU = Europe) followed by a number indicating order of appearance. Clonal lineages known to date are designated NA1 (mating type: A2; distribution: North America; environment: forest and nurseries), NA2 (A2; North America; nurseries), and EU1 (predominantly A1, rarely A2; Europe and North America; nurseries and gardens). It is expected that novel lineages or new variants within the existing three clonal lineages could in time emerge.

First Report of Downy Mildew on Nursery-Grown Hellebore Caused by Peronospora pulveracea in California

Hellebore or Lenten rose (Helleborus × hybridus) is an evergreen, herbaceous perennial in the family Ranunculaceae. Hellebores are sold as decorative, potted plants and as shade-loving landscape plants favored for their attractive and prolonged blooms in late winter or early spring. In April of 2008, downy mildew-like growth was observed on the foliage of approximately 60 containerized plants of Helleborus 'Blue Lady', 'Pink Lady', 'White Lady', and 'Royal Heritage' grown outdoors in a retail nursery in coastal San Mateo County, California. Infected foliage had angular, vein-delimited, dark brown-to-black speckled lesions on adaxial leaf surfaces turning dry and necrotic with age. Young leaves were small and distorted. Affected flowers were spotted and brown. The abaxial sides of affected leaves had light brown-to-purplish downy mildew-like growth. Subhyaline conidia, globose to ellipsoid in shape, ranged from 25 to 31 × 17 to 24 μm (average 28 × 21 μm). Conidiophores ranged from 265 to 375 × 5 to 11.5 μm (average 333 × 8.9 μm), branching dichotomously four to five times in the upper half. Morphological measurements fell within the range previously described for Peronospora pulveracea and P. alpicola, which were reported on Helleborus spp. and Ranunculus aconitifolius, respectively (1,2). DNA sequence of the internal transcribed spacer region of rDNA of our isolate (Genbank Accession No. FJ384778) matched sequences of P. pulveracea (Genbank Accession No. AY198270) and P. alpicola (Genbank Accession No. AY198271) with 100% identity. These two organisms are taxonomically indistinguishable by rDNA sequences and are likely to be the same species (3). To our knowledge, this is the first report of P. pulveracea on Helleborus × hybridus in California and the United States. Lenten rose is commercially propagated by seed, which is a potential pathway for introduction of this pathogen. Mature plants are sold and shipped intra- and interstate as decorative flowering plants or nursery stock. The importance and economic impact of this disease is limited, but significant economic losses could occur during production. References: (1) E. A. Gäumann. Beitr. Kryptogamenflora Schweiz 5:113, 1923. (2) G. Hall. Mycopathologia 126:57, 1994. (3) H. Voglmayr. Mycol. Res. 107:1132, 2003.

First Report of Bamboo Rust Caused by Kweilingia divina on Bambusa domestica in Los Angeles County, California

Elongate, interveinal, hypophyllous lesions were observed on bamboo plants (Bambusa domestica) during an inspection of a plant shipment in November of 2006 in Los Angeles County, CA. Disease incidence was 100%. Minute uredinia were spaced at regular intervals within each lesion. Urediniospores were pale tan, echinulate, and 18 to 29 × 16 to 23 μm with 1- to 1.5-μm walls. The urediniospores were surrounded and partially covered by incurved pale-to-brownish yellow paraphyses 34 to 45 × 12 μm with walls that were primarily thickened apically and dorsally to 5 μm. Several telia were observed forming inside old uredinia. Telia were brownish black, forming a flabellar head of teliospores fused laterally and in chains of three to six cells. Teliospores were chestnut brown, cuboidal to oblong, and measured 10 to 12.5 × 12.5 to 25 μm. DNA sequence of the 28S large subunit nuclear ribosomal DNA was obtained using previously published methods (1). The sequence deposited in GenBank as Accession No. EF192212 matched sequence No. DQ354554 (1), Kweilingia divina from Costa Rica (1), with 100% identity. On the basis of morphological characteristics (2) and sequence information, the rust was identified as K. divina (Syd.) Buriticá (= Dasturella divina (Syd.) Mundk. & Khesw.), causal agent of bamboo rust. Bamboo rust is widespread in parts of Asia but has also been found in Africa, Colombia, Brazil, Central America (3), and Australia (4). The shipment was traced to a foliage plant producer in Hawaii where the disease was subsequently found in the environment on the four major Hawaiian Islands of Oahu, Hawaii, Kauai, and Maui. All 10 bamboo plants received by the nursery were located and destroyed. To the best of our knowledge, this is the first report of bamboo rust occurring in California. References: (1) M. C. Aime. Mycoscience 47:112, 2006. (2) G. B. Cummins. Page 43 in: The Rust Fungi of Cereals, Grasses and Bamboos. Springer-Verlag, New York, 1971. (3) D. F. Farr et al. Fungal Databases, Systematic Mycology and Microbiology Laboratory. Online publication. ARS, USDA, year. (4) G. I. Johnson. Australas. Plant Pathol. 14:54, 1985.

First Report of the European Lineage of Phytophthora ramorum on Viburnum and Osmanthus spp. in a California Nursery

Phytophthora ramorum S. Werres & A.W.A.M. de Cock is the causal agent of sudden oak death in California and Oregon forests and ramorum blight on a broad range of host species in wildlands and nurseries. It is thought to be an introduced pathogen and only three clonal lineages are known (3). The North American lineage (lineage NA1, mating type A2) is responsible for infections in California and Oregon forests. The European lineage (lineage EU1, predominantly A1) is responsible for infections in Europe, but has also been found in nurseries in Oregon and Washington. A third lineage (NA2) has only been isolated in a few instances from nurseries in Washington and California. In June 2006, P. ramorum was isolated from diseased Viburnum tinus, Osmanthus heterophyllus, and O. fragrans cultivars from a Humboldt County retail nursery in northern California. We genotyped isolates and placed them into clonal lineages using microsatellite markers developed for P. ramorum (3,4). Genomic DNA was extracted from mycelia with the FastDNA SPIN kit (Q-Biogene, Morgan, Irvine, CA). Primers used were PrMS6, Pr9C3, PrMS39, PrMS43a, PrMS43b, and PrMS45 (3) and 18, 64, and 82 (4). We sized fluorescently labeled amplicons using capillary electrophoresis (3100 Avant Genetic Analyzer, Applied Biosystems, Foster City, CA). Isolate genotypes were compared with control isolates of known clonal lineage, including BBA9/95 (EU1), Pr102 (NA1), and WSDA3765 (NA2). Three of four isolates belonged to genotype EU1. The fourth isolate, obtained from O. fragrans, belonged to genotype NA1. We repeated genotyping on independent genomic DNA extractions and obtained identical results. Two EU1 isolates and the single NA1 isolate were tested for mating type (1) and found to be of A1, A1, and A2 mating type, respectively. The coexistence of A1 and A2 mating types in the same retail nursery suggests the potential for sexual reproduction, as is the case in P. infestans where clonal and sexual populations exist (2), although to date, sexual reproduction in nature has not been documented in P. ramorum. The California retail nursery infestation highlights the risks associated with the unintentional transport of host nursery stock infested with P. ramorum. References: (1) C. M. Brasier and S. Kirk. Mycol. Res. 108:823, 2004. (2) N. J. Grünwald and W. G. Flier. Ann. Rev. Phytopathol. 43:171, 2005. (3) K. Ivors et al. Mol. Ecol. 15:1493, 2006. (4) S. Prospero et al. Mol. Ecol. 16:2958, 2007.

First Report of Uromyces transversalis, Causal Agent of Gladiolus Rust, in San Diego County, California

In May 2006, signs and symptoms of a rust disease were observed on hybrid gladiolus plants in a home garden located in the city of San Diego, CA. Uredinial lesions were bright orange, variable in shape from globose to oval to transversely elongate, and measured 28 to 652 × 36 to 994 μm. Urediniospores measured 16 to 26 × 16 to 23 μm and had hyaline walls that were 2 μm thick and finely echinulate with recurved spines. Some uredinial lesions located primarily at the base of the leaves were surrounded by dark, irregular lesions (telia) by the epidermis. Telia contained nonseptate, light-to-chestnut brown teliospores that measured 20 to 30 × 13 to 20 μm with an apical thickening measuring 2 to 5 μm. Teliospore pedicels measured 3 to 33 × 2 to 5 μm. Groups of teliospores were separated into locules by upright, pale brown paraphyses. The rust was identified as Uromyces transversalis, the cause of gladiolus rust and a quarantine pest for the United States. An intensive 23 square mile survey was initiated and resulted in the detection of infected plants at one nearby residence 200 feet away, in a commercial nursery six miles east of the initial site of detection, and at a residence across the street from the infected nursery. Plants in the nursery were grown outdoors in three blocks, in which the disease incidences were 20, 80, and 100% with varying levels of severity. Telia were also found at this location. The nursery grows gladiolus flowers for sale at local farmer markets, sometimes supplemented by additional cut gladiolus from Mexico. U. transversalis is known to occur in Mexico (2). This rust is under eradication at all four sites. Gladiolus rust was reported in Florida in April 2006. To our knowledge, this is the first confirmed report of Gladiolus rust in California. References: (1) J. R. Hernández. Invasive Fungi. Gladiolus Rust. Systemic Botany and Mycology Laboratory, Online publication. ARS, USDA, 2004. (2) G. Rodríguez-Alvarado et al. Plant Dis. 90:687, 2006.

Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea

A previously unknown Phytophthora was recovered more than 60 times from evergreen hybrid azalea leaves collected during surveys for the sudden oak death pathogen Phytophthora ramorum in California and Tennessee. The novel Phytophthora was discovered when genomic DNA from this species cross-reacted with the ITS-based diagnostic PCR primers used to screen plants for the presence of P. ramorum. This species had caducous, semi-papillate sporangia, was homothallic with both paragynous and amphigynous antheridia, and was pathogenic on both wounded and intact azalea leaves. Nuclear and mitochondrial sequence data indicate that this species is related to, but distinct from, P. ramorum. AFLP analysis indicates that the isolates of this species have limited genotypic diversity and share no markers with P. ramorum. This paper presents the formal description of P. foliorum as a new species and underscores the need for caution when relying solely on DNA-based diagnostic tools.

First Report of Ramularia carthami, Causal Agent of Ramularia Leaf Spot of Safflower, in California

Ramularia leaf spot was identified in several fields of safflower (Carthamus tinctorius) near Gridley, CA in June 2005. Numerous circular to irregularly shaped brown lesions, 3 to 10 mm in diameter, on both sides of leaves and flower bracts resulted in stunted plants and reduced seed production. In two of the fields, nearly all plants were affected, yields were severely reduced, and the crops were abandoned. Ramularia carthami Zaprom. was identified on the basis of morphology of reproductive structures on colonized leaves (1). Hyaline, thin-walled, aseptate conidiophores (2.6 to 4.3 × 28.8 to 72.0 μm) were produced in fan-like fascicles borne on hemispherical stromata (21.6 to 31.2 × 24.0 to 36.0 μm). Hyaline, smooth, cylindrical to fusiform conidia (7.2 to 12.0 × 19.2 to 40.8 μm), 1 to 3 septate or rarely aseptate were produced singly or in short chains. The fungus was isolated from symptomatic leaves and bracts surface disinfected for 1 min in 0.5% sodium hypochlorite and incubated at 25°C on acidified potato dextrose agar (APDA). Colonies of the fungus were white with irregular margins and were slow growing. After 3 weeks, colonies were approximately 3 cm in diameter. Conidia were not produced in culture. To conduct pathogenicity tests, three 3-week-old safflower plants grown in the greenhouse were sprayed with an aqueous suspension of mycelial fragments of the fungus. Inoculum was produced by macerating a 3-cm-diameter APDA culture of the fungus in 30 ml of water. Noninoculated control plants were sprayed with water. All plants were covered with plastic bags for 48 h on a greenhouse bench. Greenhouse temperatures ranged from a minimum of 20°C to a maximum of 27°C. After 7 days, all inoculated plants developed symptoms, and the fungus was reisolated from lesions. Conidia from lesions were suspended in water and diluted to a concentration of 1 × 10⁵ conidia/ml and used as inoculum for additional pathogenicity tests. Three plants were sprayed with the conidial suspension or water as above. Lesions developed on the inoculated plants in 7 days, and the fungus was reisolated. No symptoms developed on plants sprayed with water. Both pathogenicity tests were repeated once. Sequence of the internal transcribed spacer region of rDNA of the fungus was deposited in GenBank (Accession No. DQ466083). To our knowledge, this is the first confirmed report of Ramularia leaf spot of safflower caused by R. carthami in California. Reference: (1) Morbi Plant. Script. Sect. Phytopath. Hort. Bot. Prince. USSR 15:142, 1926.

Characterization of homologues of the apple proliferation immunodominant membrane protein gene from three related phytoplasmas

SUMMARY Homologues of the immunodominant membrane protein gene from apple proliferation (AP) phytoplasma have been cloned and sequenced for three further members of the AP subclade, namely European stone fruit yellows, peach yellow leaf roll and a European isolate of pear decline (PD). The putative translation products of all three were similar in size to that of AP and all had a transmembrane region towards the N-terminus and a large C-terminal hydrophilic domain, probably held on the outside of the cell membrane in vivo. Sequence similarities for the putative proteins were compared with interrelationships of the phytoplasmas as measured by rRNA gene sequence similarity. The proteins from AP and PD were more similar (57% identical in the major hydrophilic domain) than those for any other pair (31-34%), but these two phytoplasmas were not more closely related by rRNA gene sequences than other pairs. The possibility that the relative similarities of these proteins is related to the host is discussed. It is suggested that the similarity of the AP and PD proteins may reflect the fact that these two proteins have narrow plant host ranges in two closely related genera in the tribe Maloideae (family Rosaceae), whilst the other two have broader host ranges, mainly in the tribe Prunoideae.

Frequency and seasonal distribution of pear psylla infected with the pear decline phytoplasma in california pear orchards

ABSTRACT Pear decline (PD) is an important disease of Pyrus communis fruiting cultivars in Europe, Asia, and the Americas. PD is caused by a phloem-limited phytoplasma that, in California, is transmitted from diseased to healthy trees by pear psylla, Cacopsylla pyricola. The percentage of phytoplasma-infected pear psylla has never been assessed in the United States in field-collected insects. Pear psylla were collected monthly from PD-infected trees from three orchards in northern California. Individual psylla were tested for the presence of PD phytoplasma, using both a quantitative DNA hybridization and PD phytoplasma-specific polymerase chain reaction (PCR) assays. The percentage of infected psylla ranged from 0 to 45% depending on the orchard, the month and year collected, and the method of detection. The PD phytoplasma was detected in both the winterform and summerform pear psylla. Significantly more infected psylla were detected with PCR than with DNA hybridization analysis in two of the three orchards. The number of PD phytoplasma per pear psylla was estimated to range from 1 x 10(6) to 8.2 x 10(7). The percentage of PD-infected pear psylla found in the three northern California pear orchards suggests that both winterform and summerform pear psylla could be important in the transmission of PD.

Identification of Phytoplasma Taxa and Insect Vectors of Peach Yellow Leaf Roll Disease in California

Two peach diseases in California, western X-disease (WX) and peach yellow leaf roll (PYLR) are caused by two genetically distinct phytoplasmas. Based on symptoms alone, WX and PYLR cannot be reliably distinguished. The objectives of this study were to determine which phytoplasma was causing PYLR disease in peach orchards planted near pear orchards and which phytoplasmas were present in potential insect vectors captured in both peach and pear orchards. Leafhoppers and pear psylla were collected from yellow sticky traps placed in three pear orchards and four peach orchards located in the Sacramento Valley from 1994 to 1996. DNA was extracted from potential vectors and suspect diseased trees, and analyzed for the presence of the WX and PYLR phytoplasmas using strain-specific DNA hybridization or polymerase chain reaction (PCR) assays. The most abundant phytoplasma detected in diseased peach trees was the PYLR phytoplasma. In 1994 and 1995, 10 to 25% of groups of pear psylla tested positive for the PYLR phytoplasma, while no psylla groups tested positive for the WX phytoplasma. Only one captured leafhopper tested positive for the WX phytoplasma. These results indicate the pear psylla is the primary vector of PYLR in northern California.

An immunodominant membrane protein gene from the Western X-disease phytoplasma is distinct from those of other phytoplasmas

Membrane proteins mediate several important processes, including attachment, in several Mollicute species. Phytoplasmas are non-culturable plant pathogenic mollicutes that are transmitted in a specific manner by certain phloem-feeding insect vectors. Because it is likely that phytoplasma membrane proteins are involved with some aspect of the transmission process, their identification, isolation and characterization are important first steps in understanding phytoplasma transmission. A 32 kDa immunodominant protein (IDP) from the Western X-disease (WX) phytoplasma was purified from infected plants by immunoprecipitation using monoclonal antibodies, and two peptides from a tryptic digest were sequenced. PCR primers designed from these sequences amplified a 145 bp product which hybridized with WX-related phytoplasmas in Southern blots. This PCR product was used to identify a 2.5 kbp ECO:RI-HIN:dIII fragment that was cloned and sequenced. A complete 864 bp ORF (idpA) was identified for which the putative translation product contained both of the tryptic digest peptide sequences that were used to design the PCR primers. Analysis of the predicted IdpA sequence indicated two transmembrane domains but no cleavage point. The amino acid sequence had no significant homology with other known phytoplasma IDP genes. The idpA ORF was cloned into an Escherichia coli expression vector and a fusion protein of the predicted size was identified in Western blots using a WX-specific antiserum. A rabbit polyclonal antiserum was prepared to the purified expression protein and this reacted with both the E. coli-expressed and native WX phytoplasma proteins. This newly identified WX IDP (IdpA) is distinct from other known mollicute membrane proteins.

Single molecule detection of RNA reporter probes by amplification with Q beta replicase

The addition of target-specific probe sequences within MDV RNA, an otherwise efficient template for Q beta replicase, generally resulted in RNA molecules with inferior replication properties, including reduced replication rates and poor sensitivities. We have discovered that the replication characteristics of MDV RNA molecules with internally placed probe sequences are dramatically affected by short RNA sequences (spacer elements) at the 5' and 3' ends of the probe sequence. For a given probe sequence, the sequences of the flanking spacer elements effected replication sensitivity by six orders of magnitude and replication rate by three fold. By taking advantage of spacer elements, internal MDV probes were developed that permitted the reproducible, real time, fluorescence detection of a single RNA molecule in less than 25 min through amplification with Q beta replicase. RNA structural analysis of such probes suggested that the spacer elements functioned by allowing the RNA to fold in a way which substantially maintained the tertiary structure of the MDV domain. MDV reporter probes with suitable replication properties were obtained from libraries of RNA molecules in which the probe sequence was flanked by many different spacer elements (generated by random nucleotide synthesis). We demonstrated that this is a general method for developing RNA reporter molecules which are rapidly and reproducibly amplified by Q beta replicase, even from a single molecule.

Phytoplasma-specific PCR primers based on sequences of the 16S-23S rRNA spacer region

In order to develop a diagnostic tool to identify phytoplasmas and classify them according to their phylogenetic group, we took advantage of the sequence diversity of the 16S-23S intergenic spacer regions (SRs) of phytoplasmas. Ten PCR primers were developed from the SR sequences and were shown to amplify in a group-specific fashion. For some groups of phytoplasmas, such as elm yellows, ash yellows, and pear decline, the SR primer was paired with a specific primer from within the 16S rRNA gene. Each of these primer pairs was specific for a specific phytoplasma group, and they did not produce PCR products of the correct size from any other phytoplasma group. One primer was designed to anneal within the conserved tRNA(Ile) and, when paired with a universal primer, amplified all phytoplasmas tested. None of the primers produced PCR amplification products of the correct size from healthy plant DNA. These primers can serve as effective tools for identifying particular phytoplasmas in field samples.