Inoculum production of Phytophthora medicaginis can be used to screen for partial resistance in chickpea genotypes

Phytophthora root rot caused by Phytophthora medicaginis is an important disease of chickpeas (Cicer arietinum) in Australia with limited management options, increasing reliance on breeding for improved levels of genetic resistance. Resistance based on chickpea-Cicer echinospermum crosses is partial with a quantitative genetic basis provided by C. echinospermum and some disease tolerance traits originating from C. arietinum germplasm. Partial resistance is hypothesised to reduce pathogen proliferation, while tolerant germplasm may contribute some fitness traits, such as an ability to maintain yield despite pathogen proliferation. To test these hypotheses, we used P. medicaginis DNA concentrations in the soil as a parameter for pathogen proliferation and disease assessments on lines of two recombinant inbred populations of chickpea-C. echinospermum crosses to compare the reactions of selected recombinant inbred lines and parents. Our results showed reduced inoculum production in a C. echinospermum backcross parent relative to the C. arietinum variety Yorker. Recombinant inbred lines with consistently low levels of foliage symptoms had significantly lower levels of soil inoculum compared to lines with high levels of visible foliage symptoms. In a separate experiment, a set of superior recombinant inbred lines with consistently low levels of foliage symptoms was tested for soil inoculum reactions relative to control normalised yield loss. The in-crop P. medicaginis soil inoculum concentrations across genotypes were significantly and positively related to yield loss, indicating a partial resistance-tolerance spectrum. Disease incidence and the rankings for in-crop soil inoculum were correlated strongly to yield loss. These results indicate that soil inoculum reactions may be useful to identify genotypes with high levels of partial resistance.

Localised expression of OsIAA29 suggests a key role for auxin in regulating development of the dorsal aleurone of early rice grains

Non-canonical AUX/IAA protein, OsIAA29, and ZmMPR-1 homologues, OsMRPLs, are part of an auxin-related signalling cascade operating in the dorsal aleurone during early rice grain development. Endosperm of rice and other cereals accumulates high concentrations of the predominant in planta auxin, indole-3-acetic acid (IAA) during early grain development. However, IAA signalling and function during endosperm development are poorly understood. Here, we report that OsYUC12 (an auxin biosynthesis gene) and OsIAA29 (encoding a non-canonical AUX/IAA) are both expressed exclusively in grains, reaching a maximum 5-6 days after pollination. OsYUC12 expression is localised in the aleurone, sub-aleurone and embryo, whereas OsIAA29 expression is restricted to a narrow strip in the dorsal aleurone, directly under the vascular bundle. Although rice has been reported to lack endosperm transfer cells (ETCs), this region of the aleurone is enriched with sugar transporters and is likely to play a key role in apoplastic nutrient transfer, analogous to ETCs in other cereals. OsIAA29 has orthologues only in grass species; expression of which is also specific to early grain development. OsYUC12 and OsIAA29 are temporally co-expressed with two genes (AL1 and OsPR602) previously linked to the development of dorsal aleurone or ETCs. Also up-regulated at the same time is a cluster of MYB-related genes (designated OsMRPLs) homologous to ZmMRP-1, which regulates maize ETC development. Wheat homologues of ZmMRP-1 are similarly expressed in ETCs. Although previous work has suggested that other cereals do not have orthologues of ZmMRP-1, our work suggests OsIAA29 and OsMRPLs and their homologues in other grasses are part of an auxin-regulated, conserved signalling network involved in the differentiation of cells with ETC-like function in developing cereal grains.

Expression of key auxin biosynthesis genes correlates with auxin and starch content of developing wheat (Triticum aestivum) grains

The effect of auxin on wheat (Triticum aestivum L.) grain size is contentious. Additionally, the contributions to the IAA pool from de novo synthesis versus hydrolysis of IAA-glucose are unclear. Here, we describe the first comprehensive study of tryptophan aminotransferase and indole-3-pyruvate mono-oxygenase expression from 5 to 20 days after anthesis. A comparison of expression data with measurements of endogenous IAA via combined liquid chromatography-tandem mass spectrometry using heavy isotope labelled internal standards indicates that TaTAR2-B3, TaYUC9-A1, TaYUC9-B, TaYUC9-D1, TaYUC10-A and TaYUC10-D are primarily responsible for IAA production in developing grains. Furthermore, these genes are expressed specifically in developing grains, like those found in rice (Oryza sativa L.) and maize (Zea mays L.). Our results cast doubt on the proposed role of THOUSAND-GRAIN WEIGHT gene, TaTGW6, in promoting larger grain size via negative effects on grain IAA content. Work on this gene overlooked the contribution of IAA biosynthesis from tryptophan. Although IAA synthesis occurs primarily in the endosperm, we show the TaYUC9-1 group is also strongly expressed in the embryo. Within the endosperm, TaYUC9-1 expression is highest in aleurone and transfer cells, suggesting that IAA has a key role in differentiation of these tissues as has been proposed for other cereals.

The role of soil temperature and seed dormancy in the creation and maintenance of persistent seed banks of Nassella trichotoma (serrated tussock) on the Northern Tablelands of New South Wales

A large and persistent soil seed bank characterises many important grass weeds, including Nassella trichotoma (Nees) Hack. ex Arechav. (serrated tussock), a major weed in Australia and other countries. In the present study we examined the effects of constant and alternating temperatures in regulating primary and secondary dormancy and the creation and maintenance of its soil seed bank in northern NSW, Australia. One-month-old seeds were stored at 4, 25°C, 40/10°C and 40°C, in a laboratory, and germination tests were conducted every two weeks. Few seeds germinated following storage at 4°C, compared with seeds stored at 25°C, 40/10°C and 40°C. Nylon bags containing freshly harvested seeds were buried among N. trichotoma stands in early summer, and germination tests conducted following exhumation after each season over the next 12 months. Seeds buried over summer and summer plus autumn had higher germination than seeds buried over summer plus autumn plus winter, but germination increased again in the subsequent spring. Seeds stored for zero, three, six and 12 months at laboratory temperatures were placed on a thermogradient plate with 81 temperature combinations, followed by incubation at constant 25°C of un-germinated seeds. Constant high or low temperatures prolonged primary dormancy or induced secondary dormancy whereas alternating temperatures tended to break dormancy. Few temperature combinations resulted in more than 80% germination.

Climate change impacts on the ecology of Fusarium graminearum species complex and susceptibility of wheat to Fusarium head blight: a review

Fusarium head blight (FHB) of wheat, caused mainly by a few members of the Fusarium graminearum species complex (FGSC), is a major threat to agricultural grain production, food safety, and animal health. The severity of disease epidemics and accumulation of associated trichothecene mycotoxins in wheat kernels is strongly driven by meteorological factors. The potential impacts of change in climate are reviewed from the perspective of the FGSC life cycle and host resistance mechanisms influenced by abiotic pressures at the ecological, physiological and molecular level. Alterations in climate patterns and cropping systems may affect the distribution, composition and load of FGSC inoculum, but quantitative information is lacking regarding the differential responses among FGSC members. In general, the coincidence of wet and warm environment during flowering enhances the risk of FHB epidemics, but the magnitude and direction of the change in FHB and mycotoxin risk will be a consequence of a multitude of effects on key processes affecting inoculum dynamics and host susceptibility. Rates of residue decomposition, inoculum production and dispersal may be significantly altered by changes in crop rotations, atmospheric carbon dioxide concentration ([CO2]), temperature and precipitation patterns, but the impact may be much greater for regions where inoculum is more limited, such as temperate climates. In regions of non-limiting inoculum, climate change effects will likely be greater on the pathogenic rather than on the saprophytic phase. Although the mechanisms by which abiotic stress influences wheat defences against Fusarium species are unknown, available data would suggest that wheat may be more susceptible to Fusarium infection under future climate conditions. Additional research in this area should be a priority so that breeding efforts and climate resilient management strategies can be developed.

Diversity of Thrips Species and Vectors of Tomato Spotted Wilt Virus in Tomato Production Systems in Kenya

Thrips have been recognized as primary vectors of tomato spotted wilt virus (TSWV) with Frankliniella occidentalis (Pergande) reported as the most important and efficient vector, while other species such as Thrips tabaci Lindeman also include populations that can vector the virus. A study was undertaken to establish the diversity of thrips and presence of vectors for TSWV in four major tomato production areas in Kenya. The cytochrome oxidase 1 (CO1) gene was used to generate sequences from thrips samples collected from tomatoes and weeds, and phylogenetic analysis done to establish the variation within potential vector populations. Ceratothripoides brunneus Bagnall was the predominant species of thrips in all areas. F. occidentalis and T. tabaci were abundant in Nakuru, Kirinyaga, and Loitokitok but not detected at Bungoma. Other vectors of tospoviruses identified in low numbers were Frankliniella schultzei (Trybom) and Scirtothrips dorsalis Hood. Variation was observed in T. tabaci, F. occidentalis, and F. schultzei. Kenyan specimens of T. tabaci from tomato belonged to the arrhenotokous group, while those of F. occidentalis clustered with the Western flower thrips G group. The detection of RNA of TSWV in both of these species of thrips supported the role they play as vectors. The study has demonstrated the high diversity of thrips species in tomato production and the occurrence of important vectors of TSWV and other tospoviruses.

Proteomic assessment of host-associated microevolution in the fungus Thielaviopsis basicola

Thielaviopsis basicola, a soil-borne pathogen with a broad host range and a cosmopolitan distribution, is emerging as a major risk to sustainable cotton production in Australia. Previous studies suggested that host specialization has occurred making T. basicola an ideal model for a comparative proteomic analysis of strains isolated from different hosts. Elucidation of the genomic diversity and investigation of the functional differences in the Australian population could provide valuable information towards disease control. In this study, isolates of T. basicola were investigated for genomic (internal transcribed spacers region), proteomic and cotton virulence level variations. Internal transcribed spacers sequence analysis revealed that isolates are grouped based on host of origin irrespective of geographical origin. At the proteome level a degree of diversity was apparent and hierarchical clustering analysis of the data also demonstrated a close correlation between the proteome and the host of origin. LC-MS/MS analysis and identification using cross-species similarity searching and de novo sequencing of host-specific differentially expressed proteins and the virulence-correlated proteome allowed successful identification of 43 spots. The majority were found to be involved in metabolism. Spots that were correlated with host and virulence differences included a hypothetical protein with a Rossman-fold NAD(P)(+)-binding protein domain, glyceraldehyde-3-phosphate dehydrogenase, arginase and tetrahydroxynaphthalene reductase.

Photoperiod and oviposition time in broiler breeders

1. Oviposition times were recorded for broiler breeder hens under 8-, 10-, 11-, 12-, 13-, 14- and 16-h photoperiods. 2. Mean oviposition time (MOT) was delayed relative to dawn by approximately 0.5 h for each 1-h increase in photoperiod up to 14 h, but was similar for 14- and 16-h photoperiods. However, the 0.5 h/h regression for the time when half the eggs were laid continued through to 16 h. 3. The rate of change in MOT for each 1-h increase in < or = 14-h photoperiod was similar to that reported for early and modern egg-type hybrids, but, compared with modern genotypes, time of lay itself was 1 h later than white-egg and 2.5 h later than brown-egg hybrids. 4. At photoperiods < or = 12.25 h, the number of eggs laid before dawn increased by 4-5% for each 1-h reduction in daylength.

Constant photoperiods and sexual maturity in broiler breeder pullets

1. Broiler breeder pullets were maintained on 10-, 11-, 12-, 13-, 14- or 16-h photoperiods to determine the effect of constant photoperiods on sexual development in broiler breeders. The birds were fed to achieve a 2100 g body weight at approximately 17 or 20 weeks to see if the photosexual response was modified by rate of growth. 2. In both body weight groups, pullets maintained on 10h were the first to reach sexual maturity (50 eggs/100 bird-d), and these and the 11-h pullets matured significantly earlier than any of the other photoperiod groups. Pullets maintained on 13 or 14 h matured latest, at about 3 weeks after the 10-h pullets, though both were only marginally later than the 12- or 16-h birds. These differences in maturation probably reflect the different rates at which photorefractoriness is dissipated in broiler breeders reared on photoperiods that vary in their degree of stimulatory competence. 3. There were no significant interactions among the photoperiods and the ages at 2100 g; faster-growing birds consistently matured about 10 d earlier than conventionally grown pullets.

Analysis of cotton (Gossypium hirsutum) root proteomes during a compatible interaction with the black root rot fungus Thielaviopsis basicola

A proteomic approach was used to uncover the inducible molecular defense mechanism of cotton root occurring during the compatible interaction with Thielaviopsis basicola. Microscopic observation of cotton root inoculated with a suspension of conidia showed that this necrotrophic hemibiotroph fungus interacts with the plant and completes its life cycle in our experimental system. 2-DE analysis of root extracts taken after 1, 3, 5, and 7 days postinoculation and cluster analysis of the protein expression levels showed four major profiles (constant, upregulated, one slightly downregulated, and one dramatically downregulated). Spots significantly (p<0.05) upregulated were analyzed by LC-MS/MS and identified using MASCOT MS/MS ion search software and associated databases. These proteins included defense and stress related proteins, such as pathogenesis-related proteins and proteins likely to be involved in the oxidative burst, sugar, and nitrogen metabolism as well as amino acid and isoprenoid synthesis. While many of the identified proteins are common components of the defense response of most plants, a proteasome subunit and a protein reported to be induced only in cotton root following Meloidogyne incognita infection were also identified.

Analysis of cotton (Gossypium hirsutum) root proteomes during a compatible interaction with the black root rot fungus Thielaviopsis basicola

A proteomic approach was used to uncover the inducible molecular defense mechanism of cotton root occurring during the compatible interaction with Thielaviopsis basicola. Microscopic observation of cotton root inoculated with a suspension of conidia showed that this necrotrophic hemibiotroph fungus interacts with the plant and completes its life cycle in our experimental system. 2-DE analysis of root extracts taken after 1, 3, 5, and 7 days postinoculation and cluster analysis of the protein expression levels showed four major profiles (constant, upregulated, one slightly downregulated, and one dramatically downregulated). Spots significantly (p<0.05) upregulated were analyzed by LC-MS/MS and identified using MASCOT MS/MS ion search software and associated databases. These proteins included defense and stress related proteins, such as pathogenesis-related proteins and proteins likely to be involved in the oxidative burst, sugar, and nitrogen metabolism as well as amino acid and isoprenoid synthesis. While many of the identified proteins are common components of the defense response of most plants, a proteasome subunit and a protein reported to be induced only in cotton root following Meloidogyne incognita infection were also identified.

Passage through alternative hosts changes the fitness of Fusarium graminearum and Fusarium pseudograminearum

Species of the necrotrophic fungal pathogen Fusarium that cause head blight and crown rot of cereals including wheat also infect a number of alternative host plants. This raises the prospect of more damaging pathogen strains originating and persisting as highly successful saprophytes on hosts other than wheat. The immediate impact on pathogenic (aggressiveness) and saprophytic (growth rate and fecundity) behaviour of six isolates with low, moderate or high initial aggressiveness was examined in two species of Fusarium after their passage through 10 alternative plant hosts. One passage through alternative hosts significantly reduced the pathogenic fitness of most isolates, but this change was not associated with a concomitant change in their overall saprophytic behaviour. The overall weak association between aggressiveness, fecundity and growth rate both before and after passage through the alternative hosts indicate that pathogenic and saprophytic fitness traits may be independently controlled in both Fusarium species. Thus, there was no trade-off between pathogenic and saprophytic fitness in these necrotrophic plant pathogens.

Forecasting the risk of crown rot between successive wheat crops

Published data from long-term trials at Moree, New South Wales (1986–1996), and Billa Billa, Queensland (1986–1993), were analysed to determine the factors that influence the incidence of crown rot, caused by Fusarium pseudograminearum, in successive stubble-retained, no-till wheat crops and to examine the feasibility of developing a forecasting system for the disease. Polyetic progress of the epidemics could be described by a form of the logistic growth model with a carrying capacity (K) about 5% higher than the maximum recorded incidence at each site. Infection rate between seasons was positively correlated with yield and in-crop rainfall in the previous season, both of which were indicators of biomass. Infection rate was negatively correlated with rainfall parameters during the summer fallows, which were indicators of conditions favouring residue decomposition. In-crop rainfall, stored soil moisture and temperature parameters were not significantly correlated with infection rates. Multiple regressions based on incidence in the previous season, summer rainfall and either yield or in-crop rainfall in the previous season accounted for 65–81% of the variation in disease incidence at Moree and 86% of the variation in incidence at Billa Billa. Simplified parameters for use in on-farm forecasting systems were explored. The most useful of these was the square root of the product of incidence and either yield or in-crop rainfall, which gave sufficiently accurate predictions at each site to estimate the qualitative risk of crown rot in the following crop. This could be used to decide whether management options such as resistant varieties, rotations or burning were required.

The effect of feeding time on shell quality and oviposition time in broiler breeders

Three experiments were performed to determine the effect of feeding time on shell quality and oviposition time in broiler breeders. Mean eggshell thickness was increased significantly by 3.5 microm (approximately 1%) per h delay in feeding time when hens were housed in individual cages. However, eggshell thickness was not significantly affected by feeding time when birds were housed on litter floors. Mean oviposition time was delayed relative to lights on by 5 min per h delay in feeding time. Egg weight was not significantly affected by feeding time, suggesting that differences in shell thickness and oviposition times were not due to increased oviducal transit times. Producers who wish to implement delayed feeding may have to turn lights on earlier than usual to compensate for delayed oviposition times.

Constant photoperiods and eggshell quality in broiler breeder pullets

Broiler breeder pullets were exposed to constant 10-, 11-, 12-, 13-, 14- or 16-h photoperiods from 3 d of age. Egg weight, eggshell weight and shell thickness index were determined at 52 weeks of age. Egg weight increased by 0.31 g, shell weight decreased by 30 mg and shell thickness index decreased by 0.57 mg/cm2 for each one-hour increase in photoperiod. Whilst the changes in egg weight and eggshell thickness index might be overstated because eggs were collected at the same chronological time, the effect of time of egg-laying within the day was minimal in comparison, and did not negate the conclusion that egg weight increases, and shell weight and thickness index decrease with lengthening photoperiods. The effect of photoperiod on eggshell quality was not due to differences in the rate of lay between treatments. Shell weight was unaffected by time of lay.

Identity and pathogenicity of Fusarium spp. isolated from wheat fields in Queensland and northern New South Wales

To establish the identity of Fusarium species associated with head blight (FHB) and crown rot (CR) of wheat, samples were collected from wheat paddocks with different cropping history in southern Queensland and northern New South Wales during 2001. CR was more widespread but FHB was only evident in northern NSW and often occurred with CR in the same paddock. Twenty different Fusarium spp. were identified from monoconidial isolates originating from different plant parts by using morphology and species-specific PCR assays. Fusarium pseudograminearum constituted 48% of all isolates and was more frequently obtained from the crown, whereas Fusarium graminearum made up 28% of all isolates and came mostly from the head. All 17 Fusarium species tested caused FHB and all 10 tested caused CR in plant infection assays, with significant (P < 0.001) difference in aggressiveness among species and among isolates within species for both diseases. Overall, isolates from stubble and crown were more aggressive for CR, whereas isolates from the flag leaf node were more aggressive for FHB. Isolates that were highly aggressive in causing CR were those originating from paddocks with wheat following wheat, whereas those from fields with wheat following maize or sorghum were highly aggressive for FHB. Although 20% of isolates caused severe to highly severe FHB and CR, there was no significant (P < 0.32) correlation between aggressiveness for FHB and CR. Given the ability of F. graminearum to colonise crowns in the field and to cause severe CR in bioassays, it is unclear why this pathogen is not more widely distributed in Australia.

Surface soil moisture and stubble management practice effects on the progress of infection of wheat by Fusarium pseudograminearum

The influence of surface soil moisture and stubble management practices on the progress of infection of wheat by Fusarium pseudograminearum, the cause of crown rot, was assessed in a field trial at Moree in northern New South Wales during the growing seasons of 1994, 1995 and 1996 by analysis of infection progress curves. During the dry season of 1994, wheat was sown into dry surface soil. Increases in incidence of infection followed rainfall events that raised the water content of the surface soil above the equivalent of a water potential of –1.5 MPa. The rate of increase in incidence of infection was more uniform in the 1995 and 1996 seasons, which had more regular rainfall. The area under the infection progress curve (AUIPC) was consistently greater when stubble was retained on the surface compared with incorporation with a disc plough, and this difference was significant in 2 out of 3 years. Comparison of AUIPCs indicated greater epidemiological differences between stubble management treatments than did comparisons of incidence of infection at single points during the season.

Chickpea in wheat-based cropping systems of northern New South Wales. II. Influence on biomass, grain yield, and crown rot in the following wheat crop

Rotational effects of chickpea, an important N2-fixing pulse legume of the northern grains region, on subsequent wheat require quantification of the contribution of the legume to soil N and the N status of the wheat, and of suppression of soil and stubble-borne pathogens, such as crown rot (Fusarium graminearum Schwabe Group 1). Results from selected treatments of 10 experiments in northern New South Wales in which chickpea and wheat in one season were followed by wheat in following seasons indicated generally higher dry matter (DM) and grain yields of wheat after chickpea than after wheat. Responses to chickpea were -0·8 to 3·3 t/ha (shoot DM) and -3 to 39 kg N/ha (shoot N). Responses in wheat grain yields were -0·1 to 1·7 t/ha (mean 0·85 t/ha); grain N responses were -2 to 33 kg/ha (mean 19 kg/ha). Grain protein responses were small (0·6%) and variable. Although these productivity responses could be explained largely in terms of additional nitrate-N following chickpea, we measured reduced incidences of crown rot in wheat after chickpea (range 1-36%, mean of 12%), compared with wheat after wheat (range 5-52%, mean 30%). Modelling the incidence of crown rot indicated highly significant interactions between prior crop and total water (pre-plant soil water plus in-crop rainfall). When wheat followed chickpea, incidence of the disease declined sharply with increasing water. When wheat followed wheat, there was a marginal decline in disease incidence with increasing water. Our results support the strategy of using legumes in rotation with wheat in the northern grains region for enhanced soil-N supply and disease-break effects.

Long-term effects of stubble management on the incidence of infection of wheat by Fusarium graminearum Schw. Group 1

The effect of 3 stubble management regimes (burning after harvest, incorporation with a disc plough, retention on the surface) on the incidence of infection of wheat with Fusarium graminearum Schw. Group 1 was studied for 5 seasons at 2 sites at Moree, New South Wales. One site had high initial incidence (site A) and the other low initial incidence (site B). There were no differences in incidence of infection between retained and incorporated treatments. Stubble burning reduced the increase in incidence of infection in 2 of 5 years at site A and 3 of 4 years at site B. Failure of control in other years was attributed to susceptible weed hosts and poor burns. When stubble was retained on the plots at site B that had been burnt, incidence of infection in the next season increased to a level not significantly different from the retained or incorporated treatments. Incidence of infection at the fourth consecutive wheat crop at both sites was close to the maximum recorded, which was 92% at site A and 65% at site B. There was no evidence of a decline in incidence by the time of the most recent season assessed (eighth year of continuous wheat cultivation at site A, and sixth year at site B). In most years, the differences in yield between treatments were not significant.

Histochemical changes during conidiogenic germination of sclerotia of Botrytis cinerea

Conidiogenic germination of sclerotia of Botrytis cinerea was examined histochemically. During germination reserves of protein, glycogen, and polyphosphate disappeared from medullary hyphae, and the hyphal walls and intercellular matrix of β-glucans disintegrated. Cell breakdown commenced in the centre of sclerotia and continued outwards. Microconidia were produced when almost all of the contents of the sclerotia had been removed.

A histochemical study of sclerotia of Botrytis cinerea and Botrytis fabae

Histochemical techniques were used to determine the nature and distribution of nutrient reserves and other materials in sclerotia of two isolates of Botrytis cinerea and one isolate of B. fabae. All isolates showed similar staining reactions. Hyphal walls contained chitin and β-glucans, including β-1,3-glucans, while rind cell walls also contained a melanic pigment. Medullary hyphae were surrounded by a continuous matrix of β-glucans. The intracellular nutrient reserves found were protein, glycogen, polyphosphate, and lipid.