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Dunlop MG, Dobbins SE, Farrington SM, Jones AM, Palles C, Whiffin N, Tenesa A, Spain S, Broderick P, Ooi LY, Domingo E, Smillie C, Henrion M, Frampton M, Martin L, Grimes G, Gorman M, Semple C, Ma Y, Barclay E, Prendergast J, Cazier JB, Olver B, Carvajal-Carmona LG, Ballereau S, Lloyd A, Vijayakrishnan J, Zgaga L, Rudan I, Theodoratou E, Starr JM, Deary I, Kirac I, Kovačević D, Aaltonen LA, Renkonen-Sinisalo L, Mecklin JP, Matsuda K, Nakamura Y, Okada Y, Gallinger S, Duggan DJ, Conti D, Newcomb P, Hopper J, Jenkins MA, Schumacher F, Casey G, Easton D, Shah M, Pharoah P, Lindblom A, Liu T, Smith CG, West H, Cheadle JP, Midgley R, Kerr DJ, Campbell H, Tomlinson IP, Houlston RS. Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk. Nat Genet 2012; 44:770-6. [PMID: 22634755 PMCID: PMC4747430 DOI: 10.1038/ng.2293] [Citation(s) in RCA: 184] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2011] [Accepted: 04/30/2012] [Indexed: 12/12/2022]
Abstract
We performed a meta-analysis of five genome-wide association studies to identify common variants influencing colorectal cancer (CRC) risk comprising 8,682 cases and 9,649 controls. Replication analysis was performed in case-control sets totaling 21,096 cases and 19,555 controls. We identified three new CRC risk loci at 6p21 (rs1321311, near CDKN1A; P = 1.14 × 10(-10)), 11q13.4 (rs3824999, intronic to POLD3; P = 3.65 × 10(-10)) and Xp22.2 (rs5934683, near SHROOM2; P = 7.30 × 10(-10)) This brings the number of independent loci associated with CRC risk to 20 and provides further insight into the genetic architecture of inherited susceptibility to CRC.
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Affiliation(s)
- Malcolm G Dunlop
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | - Sara E Dobbins
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
| | - Susan Mary Farrington
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | - Angela M Jones
- Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, UK
| | - Claire Palles
- Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, UK
| | - Nicola Whiffin
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
| | - Albert Tenesa
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | - Sarah Spain
- Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, UK
| | - Peter Broderick
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
| | - Li-Yin Ooi
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | - Enric Domingo
- Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, UK
| | - Claire Smillie
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | - Marc Henrion
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
| | - Matthew Frampton
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
| | - Lynn Martin
- Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, UK
| | - Graeme Grimes
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | - Maggie Gorman
- Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, UK
| | - Colin Semple
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | - Yussanne Ma
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
| | - Ella Barclay
- Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, UK
| | - James Prendergast
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | | | - Bianca Olver
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
| | | | - Stephane Ballereau
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
| | - Amy Lloyd
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
| | | | - Lina Zgaga
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
- Public Health Sciences, Teviot Place, University of Edinburgh, UK
| | - Igor Rudan
- Public Health Sciences, Teviot Place, University of Edinburgh, UK
| | | | | | - John M Starr
- University of Edinburgh Centre for Cognitive Ageing and Cognitive Epidemiology, Department of Psychology, University of Edinburgh, Edinburgh, EH8, 9AG
| | - Ian Deary
- University of Edinburgh Centre for Cognitive Ageing and Cognitive Epidemiology, Department of Psychology, University of Edinburgh, Edinburgh, EH8, 9AG
| | - Iva Kirac
- Department of Surgical Oncology, University Hospital for Tumors, University Hospital Center ‘Sestre milosrdnice’, Zagreb, Croatia
| | - Dujo Kovačević
- Department of Surgery, University Hospital Center ‘Sestre milosrdnice’, Zagreb, Croatia
| | - Lauri A Aaltonen
- Department of Medical Genetics, Genome-Scale Biology Research Program, Biomedicum Helsinki, University of Helsinki, Helsinki, Finland
| | | | - Jukka-Pekka Mecklin
- Jyväskylä Central Hospital, University of Eastern Finland, Jyväskylä, Finland
| | - Koichi Matsuda
- Laboratory of Molecular Medicine, Institute of Medical Science, The University of Tokyo, Tokyo, Japan
| | - Yusuke Nakamura
- Laboratory of Molecular Medicine, Institute of Medical Science, The University of Tokyo, Tokyo, Japan
| | - Yukinori Okada
- Laboratory for Statistical Analysis, Center for Genomic Medicine, The Institute of Physical and Chemical Research (RIKEN), Kanagawa, Japan
| | - Steven Gallinger
- Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Canada
| | - David J Duggan
- Translational Genomics Research Institute (TGen), Phoenix, AZ 85004, USA
| | - David Conti
- Department of Preventive Medicine, University of Southern California, Los Angeles, California, CA 90089, USA
| | - Polly Newcomb
- Cancer Prevention Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA
| | - John Hopper
- Centre for Molecular, Environmental, Genetic, and Analytic Epidemiology, The University of Melbourne, Australia
| | - Mark A. Jenkins
- Centre for Molecular, Environmental, Genetic, and Analytic Epidemiology, The University of Melbourne, Australia
| | - Fredrick Schumacher
- Department of Preventive Medicine, University of Southern California, Los Angeles, California, CA 90089, USA
| | - Graham Casey
- Department of Preventive Medicine, University of Southern California, Los Angeles, California, CA 90089, USA
| | - Douglas Easton
- Departments of Oncology and Public Health and Primary Care, University of Cambridge, CB1 RN, UK
| | - Mitul Shah
- Departments of Oncology and Public Health and Primary Care, University of Cambridge, CB1 RN, UK
| | - Paul Pharoah
- Departments of Oncology and Public Health and Primary Care, University of Cambridge, CB1 RN, UK
| | - Annika Lindblom
- Department of Molecular Medicine and Surgery, Karolinska Institutet, S17176 Stockholm
| | - Tao Liu
- Department of Molecular Medicine and Surgery, Karolinska Institutet, S17176 Stockholm
| | | | - Christopher G Smith
- Institute of Cancer and Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK
| | - Hannah West
- Institute of Cancer and Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK
| | - Jeremy P. Cheadle
- Institute of Cancer and Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK
| | | | - Rachel Midgley
- Department of Oncology, Oxford University, Radcliffe Infirmary, Old Road Campus Research Building, Headington, Oxford, OX3 7DQ, UK
| | - David J Kerr
- Department of Oncology, Oxford University, Radcliffe Infirmary, Old Road Campus Research Building, Headington, Oxford, OX3 7DQ, UK
| | - Harry Campbell
- Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council Human Genetics Unit, Edinburgh, EH4 2XU, UK
- Public Health Sciences, Teviot Place, University of Edinburgh, UK
| | - Ian P Tomlinson
- Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, UK
- Oxford NIHR Comprehensive Biomedical Research Centre
| | - Richard S Houlston
- Division of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK
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Affiliation(s)
- D. Kovačević
- Laboratory of Physical Chemistry, Faculty of Science, University of Zagreb, Marulićev trg 19, 10001 Zagreb, Croatia, and Laboratory of Physical Chemistry and Colloid Science, Wageningen University, Dreijenplein 6, 6703 HB Wageningen, The Netherlands
| | - S. van der Burgh
- Laboratory of Physical Chemistry, Faculty of Science, University of Zagreb, Marulićev trg 19, 10001 Zagreb, Croatia, and Laboratory of Physical Chemistry and Colloid Science, Wageningen University, Dreijenplein 6, 6703 HB Wageningen, The Netherlands
| | - A. de Keizer
- Laboratory of Physical Chemistry, Faculty of Science, University of Zagreb, Marulićev trg 19, 10001 Zagreb, Croatia, and Laboratory of Physical Chemistry and Colloid Science, Wageningen University, Dreijenplein 6, 6703 HB Wageningen, The Netherlands
| | - M. A. Cohen Stuart
- Laboratory of Physical Chemistry, Faculty of Science, University of Zagreb, Marulićev trg 19, 10001 Zagreb, Croatia, and Laboratory of Physical Chemistry and Colloid Science, Wageningen University, Dreijenplein 6, 6703 HB Wageningen, The Netherlands
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