Lattice response to the radiation damage of molecular crystals: radiation-induced versus thermal expansivity

The interaction of intense synchrotron radiation with molecular crystals frequently modifies the crystal structure by breaking bonds, producing fragments and, hence, inducing disorder. Here, a second-rank tensor of radiation-induced lattice strain is proposed to characterize the structural susceptibility to radiation. Quantitative estimates are derived using a linear response approximation from experimental data collected on three materials Hg(NO3)2(PPh3)2, Hg(CN)2(PPh3)2 and BiPh3 [PPh3 = triphenylphosphine, P(C6H5)3; Ph = phenyl, C6H5], and are compared with the corresponding thermal expansivities. The associated eigenvalues and eigenvectors show that the two tensors are not the same and therefore probe truly different structural responses. The tensor of radiative expansion serves as a measure of the susceptibility of crystal structures to radiation damage.

N-Coordinated tellurenium(II) and telluronium(IV) cations: synthesis, structure and hydrolysis

A set of N-coordinated tellurium(II) compounds containing either C,N-chelating ligands CNR (where CN = 2-(RNCH)C6H4, R = tBu or Dipp; Dipp = 2,6-iPr2C6H3) or N,C,N pincer ligands NCNR (where NCN = 2,6-(RNCH)2C6H4, R = tBu or Dipp) were synthesized. In the case of C,N-chelated compounds, the reaction of CNDippLi with Te(dtc)2 (where dtc = Et2NCS2) in a 1 : 1 molar ratio smoothly provided the carbamate CNDippTe(dtc) which upon treatment with 2 eq. of HCl provided the chloride CNDippTeCl. In contrast, the analogous conversion of NCNRLi with Te(dtc)2 surprisingly furnished ionic bromides [NCNRTe]Br as a result of the exchange of dtc by Br coming from nBuBr present in the reaction mixture. Furthermore, the reaction of CNDippTeCl or [NCNRTe]Br with silver salts AgX (X = OTf or SbF6) provided the expected tellurenium cations [CNDippTe]SbF6 and [NCNRTe]X. To further increase the Lewis acidity of the central atom, the oxidation of selected compounds with 1 eq. of SO2Cl2 was examined yielding stable compounds [CNtBuTeCl2]X and [NCNtBuTeCl2]X. The oxidation of the Dipp substituted compounds proved to be more challenging and an excess of SO2Cl2 was necessary to obtain the oxidized products [CNDippTeCl2]SbF6 and [NCNDippTeCl2]SbF6, which could solely be characterized in solution. Compounds [CNtBuTeCl2]OTf and [NCNtBuTeCl2]OTf were shown to undergo a controlled hydrolysis to the corresponding telluroxanes. All compounds were studied by multinuclear NMR spectroscopy in solution and for selected compounds solid state 125Te NMR spectroscopy and single-crystal X-ray diffraction analysis were performed. The Lewis acidity of the studied cations was examined by the Gutmann-Beckett method using Et3PO as the probing agent. The Te-N chalcogen bonding situation of selected compounds has also been examined computationally by a set of real-space bonding indicators.

An investigation into the Brønsted acidity of the perfluorinated alkoxy silanes {(F3C)3CO}3SiH and {(F6C5)3CO}2Si(Cl)H

The perfluorinated alkoxy silanes {(F₃C)₃CO}₃SiH (1) and {(F₅C₆)₃CO}₂Si(Cl)H (2) were prepared and fully characterized. Despite the high calculated Brønsted acidities, all attempts to deprotonate 1 and 2 to give the conjugate silanide ions failed due to the exceptionally short and strong Si-H bonds. In the solid state, the Si-H units are not involved in any intermolecular interactions, but instead the crystal packing consists of exceptionally short and strong F⋯F interactions. The cohesive energies are entirely comprised of London dispersion interactions, similarly as in the crystal structures of noble gases.

An indium(I) tetramer bound by anionic N-heterocyclic olefins: ambiphilic reactivity, transmetallation and a rare indium-imide

An organometallic tetrahedron-shaped indium(I) tetramer [(^MeIPrCH)In]₄ (^MeIPrCH = [(MeCNDipp)₂CCH]^-; Dipp = 2,6-ⁱPr₂C₆H₃) supported by anionic N-heterocyclic olefin (aNHO) ligands is reported. The monomeric unit of this species exhibits both Lewis acidic and basic character at indium, while the steric profile of the aNHO ligand enables isolation of a rare monomeric imide, RInNR'.

Tuning Molecular Electron Affinities against Atomic Electronegativities by Spatial Expansion of a π-System

2,1,3-Benzochalcogenadiazoles C₆ R₄ N₂ E (E/R; E=S, Se, Te; R=H, F, Cl, Br, I) and C₆ H₂ R₂ N₂ E (E/R'; E=S, Se, Te; R=Br, I) are 10π-electron hetarenes. By CV/EPR measurements, DFT calculations, and QTAIM and ELI-D analyses, it is shown that their molecular electron affinities (EAs) increase with decreasing Allen electronegativities and electron affinities of the E and non-hydrogen R (except Cl) atoms. DFT calculations for E/R+e⋅^- →[E/R]⋅^- electron capture reveal negative ΔG values numerically increasing with increasing atomic numbers of the E and R atoms; positive ΔS has a minor influence. It is suggested that the EA increase is caused by more effective charge/spin delocalization in the radical anions of heavier derivatives due to contributions from diffuse (a real-space expanded) p-AOs of the heavier E and R atoms; and that this counterintuitive effect might be of the general character.

Nickel and Palladium Complexes of a PP(O)P Pincer Ligand Based upon a peri-Substituted Acenaphthyl Scaffold and a Secondary Phosphine Oxide

A PP(O)P pincer ligand based upon a peri-substituted acenaphthyl (Ace) scaffold and a secondary phosphine oxide, (5-Ph₂P-Ace-6-)₂P(O)H, was prepared and fully characterized including a neutron diffraction study. The reaction with [Ni(H₂O)₆]Cl₂ and PdCl₂ produced ionic metal(II) complexes [κ³-P,P',P''((5-Ph₂P-Ace-6-)₂P(OH))MCl]Cl, which upon addition of Et₃N gave rise to zwitterionic metal(II) complexes κ³-P,P',P''((5-Ph₂P-Ace-6-)₂P(O))MCl (M = Ni, Pd). The reaction with Ni(COD)₂ (COD = cyclooctadiene) provided the η³-cyclooctenyl Ni(II) complex κ³-P,P',P''((5-Ph₂P-Ace-6-)₂P(O))Ni(η³-C₈H₁₃). A detailed complementary bonding analysis of the P-H, P-O, and P-M interactions was carried out (M = Ni, Pd).

Perfluorinated Trialkoxysilanol with Dramatically Increased Brønsted Acidity

The Brønsted acidity of the perfluorinated trialkoxysilanol {(F₃C)₃CO}₃SiOH is more than 13 orders of magnitude higher than that of orthosilicic acid, Si(OH)₄, and even more for most previously known silanols. It is easily deprotonated by simple amines and pyridines to give the conjugate silanolates [OSi{OC(CF₃)₃}₃]⁻, which possess extremely short Si−O bonds, comparable to those of silanones.

Similarities and Differences between Crystal and Enzyme Environmental Effects on the Electron Density of Drug Molecules

The crystal interaction density is generally assumed to be a suitable measure of the polarization of a low-molecular weight ligand inside an enzyme, but this approximation has seldomly been tested and has never been quantified before. In this study, we compare the crystal interaction density and the interaction electrostatic potential for a model compound of loxistatin acid (E64c) with those inside cathepsin B, in solution, and in vacuum. We apply QM/MM calculations and experimental quantum crystallography to show that the crystal interaction density is indeed very similar to the enzyme interaction density. Less than 0.1 e are shifted between these two environments in total. However, this difference has non-negligible consequences for derived properties.

Comparing the backfilling of mesoporous titania thin films with hole conductors of different sizes sharing the same mass density

Efficient infiltration of a mesoporous titania matrix with conducting organic polymers or small molecules is one key challenge to overcome for hybrid photovoltaic devices. A quantitative analysis of the backfilling efficiency with time-of-flight grazing incidence small-angle neutron scattering (ToF-GISANS) and scanning electron microscopy (SEM) measurements is presented. Differences in the morphology due to the backfilling of mesoporous titania thin films are compared for the macromolecule poly[4,8-bis-(5-(2-ethyl-hexyl)-thio-phen-2-yl)benzo[1,2-b;4,5-b']di-thio-phene-2,6-diyl-alt-(4-(2-ethyl-hexyl)-3-fluoro-thieno[3,4-b]thio-phene-)-2-carboxyl-ate-2-6-diyl)] (PTB7-Th) and the heavy-element containing small molecule 2-pinacol-boronate-3-phenyl-phen-anthro[9,10-b]telluro-phene (PhenTe-BPinPh). Hence, a 1.7 times higher backfilling efficiency of almost 70% is achieved for the small molecule PhenTe-BPinPh compared with the polymer PTB7-Th despite sharing the same volumetric mass density. The precise characterization of structural changes due to backfilling reveals that the volumetric density of backfilled materials plays a minor role in obtaining good backfilling efficiencies and interfaces with large surface contact.

Proximity enforced oxidative addition of a strong unpolar σ-Si-Si bond at rhodium(i)

The new bidentate bisphosphino ligand (5-Ph₂P-Ace-6-SiMe₂)₂ (1) binds rhodium(i) chloride and brings it into close proximity to a strong unpolar σ-Si-Si bond, in which it immediately inserts. In the spirocyclic Rh(iii) product of the oxidative addition, (5-Ph₂P-Ace-6-SiMe₂)₂RhCl (2), the two Si atoms are still close enough to engage in weak non-covalent interactions.

Linking Low-Coordinate Ge(II) Centers via Bridging Anionic N-Heterocyclic Olefin Ligands

We introduce a large-scale synthesis of a sterically encumbered N-heterocyclic olefin (NHO) and illustrate the ability of its deprotonated form to act as an anionic four-electron bridging ligand. The resulting multicenter donating ability has been used to link two low oxidation state Ge(II) centers in close proximity, leading to bridging Ge-Cl-Ge and Ge-H-Ge bonding environments supported by Ge₂C₂ heterocyclic manifolds. Reduction of a dimeric [RGeCl]₂ species (R = anionic NHO, [(MeCNDipp)₂C═CH]^-; Dipp = 2,6-ⁱPr₂C₆H₃) did not give the expected acyclic RGeGeR analogue of an alkyne, but rather ligand migration/disproportionation transpired to yield the known diorganogermylene R₂Ge and Ge metal. This process was examined computationally, and the ability of the reported anionic NHO to undergo atom migration chemistry contrasts with what is typically found with bulky monoanionic ligands (such as terphenyl ligands).

Proximity Enforced Agostic Interactions Involving Closed-Shell Coinage Metal Ions

A proximity enforcing diarylsilane ligand is reported, which gives rise to unusual Si-H···M interactions with the d¹⁰ metal ions Cu⁺ and Ag⁺ upon complexation. These interactions are studied in detail both experimentally and computationally and can be classified to be weakly agostic in nature for the Si-H···Cu interaction. The Si-H···Ag interaction has more signatures of an electrostatic contact.

Fast and Accurate Quantum Crystallography: From Small to Large, from Light to Heavy

The coupling of the crystallographic refinement technique Hirshfeld atom refinement (HAR) with the recently constructed libraries of extremely localized molecular orbitals (ELMOs) gives rise to the new quantum-crystallographic method HAR-ELMO. This method is significantly faster than HAR but as accurate and precise, especially concerning the free refinement of hydrogen atoms from X-ray diffraction data, so that the first fully quantum-crystallographic refinement of a protein is presented here. However, the promise of HAR-ELMO exceeds large molecules and protein crystallography. In fact, it also renders possible electron-density investigations of heavy elements in small molecules and facilitates the detection and isolation of systematic errors from physical effects.

A Modular Approach to Phosphorescent π-Extended Heteroacenes

A modular route to previously inaccessible classes of ring-fused π-extended heteroacenes bearing the heavy inorganic element tellurium (Te) is presented. These new materials can be viewed as n-doped analogs of molecular graphene subunits that exhibit color tunable visible light phosphorescence in the solid state and in the presence of air. The general mechanism of phosphorescence in these systems was probed experimentally and computationally via time-dependent density functional theory (TD-DFT). The incorporation of Te into π-extended oligoacene frameworks was achieved by an efficient Zr/Te transmetalation protocol; related zirconium-element exchange reactions have been used to prepare both electron-rich and electron-deficient heterocycles containing different elements from throughout the p-block. Therefore, the current study provides a clear path to incorporate inorganic elements into heteroacenes of greater complexity and side group selectivity compared to existing synthetic routes.

Transition metal complexes of antimony centered ligands based upon acenaphthyl scaffolds. Coordination non-innocent or not?

The synthesis and structures of the di- and triorgano antimony compounds (6-Ph2P-Ace-5-)2SbCl (1) and (6-Ph2P-Ace-5-)3Sb (2) are presented along with their use as coordination non-innocent ligands for transition metals, leading to the complexes Cl(6-Ph2P-Ace-5-)2SbCuCl (3), Cl2(6-Ph2P-Ace-5-)2SbPdCl (4), Cl2(6-Ph2P-Ace-5-)2SbPtCl (5) and Cl(6-Ph2P-Ace-5-)3SbRhCl (6). The electronic structures of 1-6 were investigated by DFT computations using a set of topological and surface-based real-space bonding indicators derived from the Atoms-In-Molecules (AIM), Non-Covalent interactions Index (NCI), and Electron Localizability Indicator (ELI-D) methods, unravelling a dative Sb-Cu bond character in 3 and polar-covalent Sb-Pd/Pt/Rh interactions in 4-6.

Bis(6-diphenylphosphinoacenaphth-5-yl)telluride as a ligand toward coinage metal chlorides

The nature of the Te–Cu and Te–Ag interactions in the complexes (6-Ph₂P-Ace-5-)₂Te·CuCl and (6-Ph₂P-Ace-5-)₂Te·AgCl was investigated.

Aerobic Solid State Red Phosphorescence from Benzobismole Monomers and Patternable Self-Assembled Block Copolymers

The synthesis of the first bismuth-containing macromolecules that exhibit phosphorescence in the solid state and in the presence of oxygen is reported. These red emissive high molecular weight polymers (>300 kDa) feature benzobismoles appended to a hydrocarbon scaffold, and were built via an efficient ring-opening metathesis (ROMP) protocol. Moreover, our general procedure readily allows for the formation of cross-linked networks and block copolymers. Attaining stable red phosphorescence with non-toxic elements remains a challenge and, thus, our new class of soluble (processable) polymeric phosphor is of great interest. Furthermore, the formation of bismuth-rich cores within organic-inorganic block copolymer spherical micelles is possible, leading to patterned arrays of bismuth in the film state.

A Monoaryllead Trichloride That Resists Reductive Elimination

Transmetallation of Pb(OAc)₄ with R₂ Hg (1), followed by treatment with HCl in Et₂ O, provided RPbCl₃ (2), the first kinetically stabilized monoorganolead trihalide that resists reductive elimination under ambient conditions. The kinetic stabilisation relies on an intramolecularly coordinating O-donor substituent (R=6-Ph₂ P(O)-Ace-5-). The gram-scale preparation of 2 was key for the synthesis of unsymmetrically substituted diaryllead dichlorides RR'PbCl₂ (3 a, R'=Ph; 3 b, R'=4-MeOC₆ H₄ ; 3 c, R'=4-Me₂ NC₆ H₄ ).

Understanding the Origin of Phosphorescence in Bismoles: A Synthetic and Computational Study

A series of bismuth heterocycles, termed bismoles, were synthesized via the efficient metallacycle transfer (Bi/Zr exchange) involving readily accessible zirconacycles. The luminescence properties of three structurally distinct bismoles were explored in detail via time-integrated and time-resolved photoluminescence spectroscopy using ultrafast laser excitation. Moreover, time-dependent density functional theory computations were used to interpret the nature of fluorescence versus phosphorescence in these bismuth-containing heterocycles and to guide the future preparation of luminescent materials containing heavy inorganic elements. Specifically, orbital character at bismuth within excited states is an important factor for achieving enhanced spin-orbit coupling and to promote phosphorescence. The low aromaticity of the bismole rings was demonstrated by formation of a CuCl π-complex, and the nature of the alkene-CuCl interaction was probed by real-space bonding indicators derived from Atoms-In-Molecules, the Electron Localizability Indicator, and the Non-Covalent Interaction index; such tools are of great value in interpreting nonstandard bonding environments within inorganic compounds.

Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2

Hirshfeld atom refinement (HAR) is a novel X-ray structure refinement technique that employs aspherical atomic scattering factors obtained from stockholder partitioning of a theoretically determined tailor-made static electron density. HAR overcomes many of the known limitations of independent atom modelling (IAM), such as too short element-hydrogen distances, r(X-H), or too large atomic displacement parameters (ADPs). This study probes the accuracy and precision of anisotropic hydrogen and non-hydrogen ADPs and of r(X-H) values obtained from HAR. These quantities are compared and found to agree with those obtained from (i) accurate neutron diffraction data measured at the same temperatures as the X-ray data and (ii) multipole modelling (MM), an established alternative method for interpreting X-ray diffraction data with the help of aspherical atomic scattering factors. Results are presented for three chemically different systems: the aromatic hydro-carbon rubrene (orthorhombic 5,6,11,12-tetra-phenyl-tetracene), a co-crystal of zwitterionic betaine, imidazolium cations and picrate anions (BIPa), and the salt potassium hydrogen oxalate (KHOx). The non-hydrogen HAR-ADPs are as accurate and precise as the MM-ADPs. Both show excellent agreement with the neutron-based values and are superior to IAM-ADPs. The anisotropic hydrogen HAR-ADPs show a somewhat larger deviation from neutron-based values than the hydrogen SHADE-ADPs used in MM. Element-hydrogen bond lengths from HAR are in excellent agreement with those obtained from neutron diffraction experiments, although they are somewhat less precise. The residual density contour maps after HAR show fewer features than those after MM. Calculating the static electron density with the def2-TZVP basis set instead of the simpler def2-SVP one does not improve the refinement results significantly. All HARs were performed within the recently introduced HARt option implemented in the Olex2 program. They are easily launched inside its graphical user interface following a conventional IAM.

A tetranuclear arylstibonic acid with an adamantane type structure

Base hydrolysis of an intramolecularly coordinated arylantimony tetrachloride is the key to the preparation a well-defined arylstibonic acid having an adamantane type structure.

Peri-substituted (ace)naphthylphosphinoboranes. (Frustrated) Lewis pairs

The synthesis and molecular structures of 1-(diphenylphosphino)-8-naphthyldimesitylborane (1) and 5-(diphenylphosphino)-6-acenaphthyldimesitylborane (2) are reported. The experimentally determined P-B peri distances of 2.162(2) and 3.050(3) Å allow 1 and 2 to be classified as regular and frustrated Lewis pairs. The electronic characteristics of the (non)bonding P-B contacts are determined by analysis of a set of real-space bonding indicators (RSBIs) derived from the theoretically calculated electron and pair densities. These densities are analyzed utilizing the atoms-in-molecules (AIM), stockholder, and electron-localizability-indicator (ELI-D) space partitioning schemes. The recently introduced mapping of the electron localizability on the ELI-D basin surfaces is also applied. All RSBIs clearly discriminate the bonding P-B contact in 1 from the nonbonding P-B contact in 2, which is due to the fact that the acenaphthene framework is rather rigid, whereas the naphthyl framework shows sufficient conformational flexibility, allowing shorter peri interations. The results are compared to the previously known prototypical phosphinoborane Ph3PB(C6F5)3, which serves as a reference for a bonding P-B interaction. The most prominent features of the nonbonding P-B contact in 2 are the lack of an AIM bond critical point, the unaffected Hirshfeld surfaces of the P and B atomic fragments, and the negligible penetration of the electron population of the ELI-D lone pair basin of the P atom into the AIM B atomic basin.