Magnesium supply alleviates iron toxicity-induced leaf bronzing in rice through exclusion and tissue-tolerance mechanisms

Introduction

Iron (Fe) toxicity is a widespread nutritional disorder in lowland rice causing growth retardation and leaf symptoms referred to as leaf bronzing. It is partly caused by an imbalance of nutrients other than Fe and supply of these is known to mitigate the toxicity. But the physiological and molecular mechanisms involved are unknown.

Methods

We investigated the effect of magnesium (Mg) on Fe toxicity tolerance in a field study in the Central Highlands of Madagascar and in hydroponic experiments with excess Fe (300 mg Fe L-1). An RNA-seq analysis was conducted in a hydroponic experiment to elucidate possible mechanisms underlying Mg effects.

Results and discussion

Addition of Mg consistently decreased leaf bronzing under both field and hydroponic conditions, whereas potassium (K) addition caused minor effects. Plants treated with Mg tended to have smaller shoot Fe concentrations in the field, suggesting enhanced exclusion at the whole-plant level. However, analysis of multiple genotypes showed that Fe toxicity symptoms were also mitigated without a concomitant decrease of Fe concentration, suggesting that increased Mg supply confers tolerance at the tissue level. The hydroponic experiments also suggested that Mg mitigated leaf bronzing without significantly decreasing Fe concentration or oxidative stress as assessed by the content of malondialdehyde, a biomarker for oxidative stress. An RNA-seq analysis revealed that Mg induced more changes in leaves than roots. Subsequent cis-element analysis suggested that NAC transcription factor binding sites were enriched in genes induced by Fe toxicity in leaves. Addition of Mg caused non-significant enrichment of the same binding sites, suggesting that NAC family proteins may mediate the effect of Mg. This study provides clues for mitigating Fe toxicity-induced leaf bronzing in rice.

Measured and modeled nitrogen balances in lowland rice-pasture rotations in temperate South America

Rotational rice systems, involving pastures, other crops and/or livestock, are common in temperate South America, exemplified by the rice-pasture-livestock system of Uruguay which combines very high rice yields with tight nitrogen (N) balances. The generally good nutrient use efficiency in these systems provides a template for nutrient management in other mixed farming systems, if the underlying processes can be sufficiently well quantified and understood. Here, we studied N balances in rice–non-rice rotations in a long-term experiment in Uruguay, with the aim of parameterizing and testing the DNDC model of N dynamics for such systems for use in future work. The experiment includes three rotations: continuous rice (RI-CONT), rice-soybean (RI-SOY) and rice-pasture (RI-PAST). We considered 9 years of data on N balances (NBAL), defined as all N inputs minus all N outputs; N surplus (NSURP), defined as all N inputs minus only N outputs in food products; and N use efficiency (NUE), defined as the fraction of N inputs removed in food products. We parameterized DNDC against measured yield and input and output data, with missing data on N losses inferred from the N balance and compared with literature values. The model performance was assessed using standard indices of mean error, agreement and efficiency. The model simulated crop yields and rice cumulative N uptake very well, and soil N reasonably well. The values of NBAL were +45 and−20 kg N ha−1 yr−1 in RI-CONT and RI-SOY, respectively, and close to zero in RI-PAST (−6 kg N ha−1 yr−1). Values of NSURP decreased in the order RI-CONT >> RI-SOY > RI-PAST (+115, +25 and +13 kg N ha−1 yr−1, respectively). Values of NUE (84, 54, and 48% for RI-SOY, RI-PAST, and RI-CONT, respectively) decreased as NBAL increased. The sensitivity of DNDC's predictions to the agronomic characteristics of the different crops, rotations and water regimes agreed with expectations. We conclude that the DNDC model as parameterized here is suitable for exploring how to optimize N management in these systems.

Regional differences in nitrogen balance and nitrogen use efficiency in the rice–livestock system of Uruguay

The reintegration of crops with livestock systems is proposed as a way of improving the environmental impacts of food production globally, particularly the impact involving nitrogen (N). A detailed understanding of processes governing N fluxes and budgets is needed to design productive and efficient crop–livestock systems. This study aimed to investigate regional differences in N balance (NBAL, defined as all N inputs minus outputs), N use efficiency (NUE, defined as N outputs/inputs × 100), and N surplus (NSURP, defined as all N inputs minus only outputs in food products) in the rice–livestock system of Uruguay. Three regions across Uruguay are distinguished based on soil fertility and length of pasture rotation. The northern region has high soil fertility and short length of rotation (HFSR); the central region has medium soil fertility and medium length of rotation (MFMR); the eastern region has low fertility and long pasture rotation (LFLR). Results for the last 18 years show a very high NUE (90%) for the rice component in all rotations, associated with negative NBALs ranging from −35 kg N ha−1 yr−1 in HFSR to −3 kg N ha−1 yr−1 in LFLR. However, the livestock component, which overall had low animal productivity (<2 kg N ha−1 yr−1), had low NUE (<10%) but positive NBALs in all the rotations, sustaining N supply in the rice component. At the system level, NUE was high (60%) and NBAL was slightly positive in all rotations (from +2.8 kg N ha−1 yr−1 in HFSR to +8.5 kg N ha−1 yr−1 in LFLR). Because of a recent increase in the N fertilizer dose in rice, NSURP for the overall system was intermediate (40 kg N ha−1 yr−1) and should be monitored in the future. Efforts to improve the system's efficiency should focus on the livestock component.

Below-ground plant-soil interactions affecting adaptations of rice to iron toxicity

Iron toxicity is a major constraint to rice production, particularly in highly weathered soils of inland valleys in sub-Saharan Africa where the rice growing area is rapidly expanding. There is a wide variation in tolerance of iron toxicity in the rice germplasm. However, the introgression of tolerance traits into high-yielding germplasm has been slow owing to the complexity of the tolerance mechanisms and large genotype-by-environment effects. We review current understanding of tolerance mechanisms, particularly those involving below-ground plant-soil interactions. Until now these have been less studied than above-ground mechanisms. We cover processes in the rhizosphere linked to exclusion of toxic ferrous iron by oxidation, and resulting effects on the mobility of nutrient ions. We also cover the molecular physiology of below-ground processes controlling iron retention in roots and root-shoot transport, and also plant iron sensing. We conclude that future breeding programmes should be based on well-characterized molecular markers for iron toxicity tolerance traits. To successfully identify such markers, the complex tolerance response should be broken down into its components based on understanding of tolerance mechanisms, and tailored screening methods should be developed for individual mechanisms.

Rice increases phosphorus uptake in strongly sorbing soils by intra-root facilitation

Upland rice (Oryza sativa) is adapted to strongly phosphorus (P) sorbing soils. The mechanisms underlying P acquisition, however, are not well understood, and models typically underestimate uptake. This complicates root ideotype development and trait-based selection for further improvement. We present a novel model, which correctly simulates the P uptake by a P-efficient rice genotype measured over 48 days of growth. The model represents root morphology at the local rhizosphere scale, including root hairs and fine S-type laterals. It simulates fast- and slowly reacting soil P and the P-solubilizing effect of root-induced pH changes in the soil. Simulations predict that the zone of pH changes and P solubilization around a root spreads further into the soil than the zone of P depletion. A root needs to place laterals outside its depletion- but inside its solubilization zone to maximize P uptake. S-type laterals, which are short but hairy, appear to be the key root structures to achieve that. Thus, thicker roots facilitate the P uptake by fine lateral roots. Uptake can be enhanced through longer root hairs and greater root length density but was less sensitive to total root length and root class proportions.

Assessing the carbon capture potential of a reforestation project

The number of reforestation projects worldwide is increasing. In many cases funding is obtained through the claimed carbon capture of the trees, presented as immediate and durable, whereas reforested plots need time and maintenance to realise their carbon capture potential. Further, claims usually overlook the environmental costs of natural or anthropogenic disturbances during the forest’s lifetime, and greenhouse gas (GHG) emissions associated with the reforestation are not allowed for. This study uses life cycle assessment to quantify the carbon footprint of setting up a reforestation plot in the Peruvian Amazon. In parallel, we combine a soil carbon model with an above- and below-ground plant carbon model to predict the increase in carbon stocks after planting. We compare our results with the carbon capture claims made by a reforestation platform. Our results show major errors in carbon accounting in reforestation projects if they (1) ignore the time needed for trees to reach their carbon capture potential; (2) ignore the GHG emissions involved in setting up a plot; (3) report the carbon capture potential per tree planted, thereby ignoring limitations at the forest ecosystem level; or (4) under-estimate tree losses due to inevitable human and climatic disturbances. Further, we show that applications of biochar during reforestation can partially compensate for project emissions.

Modelling the potential for soil carbon sequestration using biochar from sugarcane residues in Brazil

Sugarcane (Saccharum officinarum L.) cultivation leaves behind around 20 t ha-1 of biomass residue after harvest and processing. We investigated the potential for sequestering carbon (C) in soil with these residues by partially converting them into biochar (recalcitrant carbon-rich material). First, we modified the RothC model to allow changes in soil C arising from additions of sugarcane-derived biochar. Second, we evaluated the modified model against published field data, and found satisfactory agreement between observed and predicted soil C accumulation. Third, we used the model to explore the potential for soil C sequestration with sugarcane biochar in São Paulo State, Brazil. The results show a potential increase in soil C stocks by 2.35 ± 0.4 t C ha-1 year-1 in sugarcane fields across the State at application rates of 4.2 t biochar ha-1 year-1. Scaling to the total sugarcane area of the State, this would be 50 Mt of CO2 equivalent year-1, which is 31% of the CO2 equivalent emissions attributed to the State in 2016. Future research should (a) further validate the model with field experiments; (b) make a full life cycle assessment of the potential for greenhouse gas mitigation, including additional effects of biochar applications on greenhouse gas balances.

The greenhouse gas impacts of converting food production in England and Wales to organic methods

Agriculture is a major contributor to global greenhouse gas (GHG) emissions and must feature in efforts to reduce emissions. Organic farming might contribute to this through decreased use of farm inputs and increased soil carbon sequestration, but it might also exacerbate emissions through greater food production elsewhere to make up for lower organic yields. To date there has been no rigorous assessment of this potential at national scales. Here we assess the consequences for net GHG emissions of a 100% shift to organic food production in England and Wales using life-cycle assessment. We predict major shortfalls in production of most agricultural products against a conventional baseline. Direct GHG emissions are reduced with organic farming, but when increased overseas land use to compensate for shortfalls in domestic supply are factored in, net emissions are greater. Enhanced soil carbon sequestration could offset only a small part of the higher overseas emissions.

The greenhouse gas (GHG) mitigation potential of organic methods is poorly understood. Here, the authors assess the GHG impact of a 100% shift to organic food production in England and Wales and find that direct GHG emissions are reduced with organic farming, but when increased land use abroad to allow for production shortfalls is factored in, GHG emissions are elevated well-above the baseline.

A Model of Uranium Uptake by Plant Roots Allowing for Root-Induced Changes in the soil

We develop a model with which to study the poorly understood mechanisms of uranium (U) uptake by plants. The model is based on equations for transport and reaction of U and acids and bases in the rhizosphere around cylindrical plant roots. It allows for the speciation of U with hydroxyl, carbonate, and organic ligands in the soil solution; the nature and kinetics of sorption reactions with the soil solid; and the effects of root-induced changes in rhizosphere pH. A sensitivity analysis showed the importance of soil sorption and speciation parameters as influenced by pH and CO₂ pressure; and of root geometry and root-induced acid-base changes linked to the form of nitrogen taken up by the root. The root absorbing coefficient for U, relating influx to the concentration of U species in solution at the root surface, was also important. Simplified empirical models of U uptake by different plant species and soil types need to account for these effects.

Soil CO2 venting as one of the mechanisms for tolerance of Zn deficiency by rice in flooded soils

We sought to explain rice (Oryza sativa) genotype differences in tolerance of zinc (Zn) deficiency in flooded paddy soils and the counter-intuitive observation, made in earlier field experiments, that Zn uptake per plant increases with increasing planting density. We grew tolerant and intolerant genotypes in a Zn-deficient flooded soil at high and low planting densities and found (a) plant Zn concentrations and growth increased with planting density and more so in the tolerant genotype, whereas the concentrations of other nutrients decreased, indicating a specific effect on Zn uptake; (b) the effects of planting density and genotype on Zn uptake could only be explained if the plants induced changes in the soil to make Zn more soluble; and (c) the genotype and planting density effects were both associated with decreases in dissolved CO₂ in the rhizosphere soil solution and resulting increases in pH. We suggest that the increases in pH caused solubilization of soil Zn by dissolution of alkali-soluble, Zn-complexing organic ligands from soil organic matter. We conclude that differences in venting of soil CO₂ through root aerenchyma were responsible for the genotype and planting density effects.

Long-term increases in soil carbon due to ecosystem fertilization by atmospheric nitrogen deposition demonstrated by regional-scale modelling and observations

Fertilization of nitrogen (N)-limited ecosystems by anthropogenic atmospheric nitrogen deposition (Ndep) may promote CO2 removal from the atmosphere, thereby buffering human effects on global radiative forcing. We used the biogeochemical ecosystem model N14CP, which considers interactions among C (carbon), N and P (phosphorus), driven by a new reconstruction of historical Ndep, to assess the responses of soil organic carbon (SOC) stocks in British semi-natural landscapes to anthropogenic change. We calculate that increased net primary production due to Ndep has enhanced detrital inputs of C to soils, causing an average increase of 1.2 kgCm-2 (c. 10%) in soil SOC over the period 1750-2010. The simulation results are consistent with observed changes in topsoil SOC concentration in the late 20th Century, derived from sample-resample measurements at nearly 2000 field sites. More than half (57%) of the additional topsoil SOC is predicted to have a short turnover time (c. 20 years), and will therefore be sensitive to future changes in Ndep. The results are the first to validate model predictions of Ndep effects against observations of SOC at a regional field scale. They demonstrate the importance of long-term macronutrient interactions and the transitory nature of soil responses in the terrestrial C cycle.

Rice Genotype Differences in Tolerance of Zinc-Deficient Soils: Evidence for the Importance of Root-Induced Changes in the Rhizosphere

Zinc (Zn) deficiency is a major constraint to rice production and Zn is also often deficient in humans with rice-based diets. Efforts to breed more Zn-efficient rice are constrained by poor understanding of the mechanisms of tolerance to deficiency. Here we assess the contributions of root growth and root Zn uptake efficiency, and we seek to explain the results in terms of specific mechanisms. We made a field experiment in a highly Zn-deficient rice soil in the Philippines with deficiency-tolerant and -sensitive genotypes, and measured growth, Zn uptake and root development. We also measured the effect of planting density. Tolerant genotypes produced more crown roots per plant and had greater uptake rates per unit root surface area; the latter was at least as important as root number to overall tolerance. Tolerant and sensitive genotypes took up more Zn per plant at greater planting densities. The greater uptake per unit root surface area, and the planting density effect can only be explained by root-induced changes in the rhizosphere, either solubilizing Zn, or neutralizing a toxin that impedes Zn uptake (possibly [Formula: see text] or Fe(2+)), or both. Traits for these and crown root number are potential breeding targets.

Enhanced zinc uptake by rice through phytosiderophore secretion: a modelling study

Rice (Oryza sativa L.) secretes far smaller amounts of metal-complexing phytosiderophores (PS) than other grasses. But there is increasing evidence that it relies on PS secretion for its zinc (Zn) uptake. After nitrogen, Zn deficiency is the most common nutrient disorder in rice, affecting up to 50% of lowland rice soils globally. We developed a mathematical model of PS secretion from roots and resulting solubilization and uptake of Zn, allowing for root growth, diurnal variation in secretion, decomposition of the PS in the soil, and the transport and interaction of the PS and Zn in the soil. A sensitivity analysis showed that with realistic parameter values for rice in submerged soil, the typically observed rates of PS secretion from rice are sufficient and necessary to explain observed rates of Zn uptake. There is little effect of diurnal variation in secretion on cumulative Zn uptake, irrespective of other model parameter values, indicating that the observed diurnal variation is not causally related to Zn uptake efficiency. Rooting density has a large effect on uptake per unit PS secretion as a result of overlap of the zones of influence of neighbouring roots. The effects of other complications in the rice rhizosphere are discussed.

A dual porosity model of nutrient uptake by root hairs

• The importance of root hairs in the uptake of sparingly soluble nutrients is understood qualitatively, but not quantitatively, and this limits efforts to breed plants tolerant of nutrient-deficient soils. • Here, we develop a mathematical model of nutrient uptake by root hairs allowing for hair geometry and the details of nutrient transport through soil, including diffusion within and between soil particles. We give illustrative results for phosphate uptake. • Compared with conventional 'single porosity' models, this 'dual porosity' model predicts greater root uptake because more nutrient is available by slow release from within soil particles. Also the effect of soil moisture is less important with the dual porosity model because the effective volume available for diffusion in the soil is larger, and the predicted effects of hair length and density are different. • Consistent with experimental observations, with the dual porosity model, increases in hair length give greater increases in uptake than increases in hair density per unit main root length. The effect of hair density is less in dry soil because the minimum concentration in solution for net influx is reached more rapidly. The effect of hair length is much less sensitive to soil moisture.

Measurement of zinc stable isotope ratios in biogeochemical matrices by double-spike MC-ICPMS and determination of the isotope ratio pool available for plants from soil

Analysis of naturally occurring isotopic variations is a promising tool for investigating Zn transport and cycling in geological and biological settings. Here, we present the recently installed double-spike (DS) technique at the MAGIC laboratories at Imperial College London. The procedure improves on previous published DS methods in terms of ease of measurement and precisions obtained. The analytical method involves addition of a (64)Zn-(67)Zn double-spike to the samples prior to digestion, separation of Zn from the sample matrix by ion exchange chromatography, and isotopic analysis by multiple-collector inductively coupled plasma mass spectrometry. The accuracy and reproducibility of the method were validated by analyses of several in-house and international elemental reference materials. Multiple analyses of pure Zn standard solutions consistently yielded a reproducibility of about ±0.05‰ (2 SD) for δ(66)Zn, and comparable precisions were obtained for analyses of geological and biological materials. Highly fractionated Zn standards analyzed by DS and standard sample bracketing yield slightly varying results, which probably originate from repetitive fractionation events during manufacture of the standards. However, the δ(66)Zn values (all reported relative to JMC Lyon Zn) for two less fractionated in-house Zn standard solutions, Imperial Zn (0.10 ± 0.08‰: 2 SD) and London Zn (0.08 ± 0.04‰), are within uncertainties to data reported with different mass spectrometric techniques and instruments. Two standard reference materials, blend ore BCR 027 and ryegrass BCR 281, were also measured, and the δ(66)Zn were found to be 0.25 ± 0.06‰ (2 SD) and 0.40 ± 0.09‰, respectively. Taken together, these standard measurements ascertain that the double-spike methodology is suitable for accurate and precise Zn isotope analyses of a wide range of natural samples. The newly installed technique was consequently applied to soil samples and soil leachates to investigate the isotopic signature of plant available Zn. We find that the isotopic composition is heavier than the residual, indicating the presence of loosely bound Zn deposited by atmospheric pollution, which is readily available to plants.

Evidence for the mechanisms of zinc uptake by rice using isotope fractionation

In an earlier study, we found that rice (Oryza sativa) grown in nutrient solution well-supplied with Zn preferentially took up light (64)Zn over (66)Zn, probably as a result of kinetic fractionation in membrane transport processes. Here, we measure isotope fractionation by rice in a submerged Zn-deficient soil with and without Zn fertilizer. We grew the same genotype as in the nutrient solution study plus low-Zn tolerant and intolerant lines from a recombinant inbred population. In contrast to the nutrient solution, in soil with Zn fertilizer we found little or heavy isotopic enrichment in the plants relative to plant-available Zn in the soil, and in soil without Zn fertilizer we found consistently heavy enrichment, particularly in the low-Zn tolerant line. These observations are only explicable by complexation of Zn by a complexing agent released from the roots and uptake of the complexed Zn by specific root transporters. We show with a mathematical model that, for realistic rates of secretion of the phytosiderophore deoxymugineic acid (DMA) by rice, and realistic parameters for the Zn-solubilizing effect of DMA in soil, solubilization and uptake by this mechanism is necessary and sufficient to account for the measured Zn uptake and the differences between genotypes.

A dynamic model of nutrient uptake by root hairs

Root hairs are known to be important in the uptake of sparingly soluble nutrients by plants, but quantitative understanding of their role in this is weak. This limits, for example, the breeding of more nutrient-efficient crop genotypes. We developed a mathematical model of nutrient transport and uptake in the root hair zone of single roots growing in soil or solution culture. Accounting for root hair geometry explicitly, we derived effective equations for the cumulative effect of root hair surfaces on uptake using the method of homogenization. Analysis of the model shows that, depending on the morphological and physiological properties of the root hairs, one of three different effective models applies. They describe situations where: (1) a concentration gradient dynamically develops within the root hair zone; (2) the effect of root hair uptake is negligibly small; or (3) phosphate in the root hair zone is taken up instantaneously. Furthermore, we show that the influence of root hairs on rates of phosphate uptake is one order of magnitude greater in soil than solution culture. The model provides a basis for quantifying the importance of root hair morphological and physiological properties in overall uptake, in order to design and interpret experiments in different circumstances.

Carbon losses from all soils across England and Wales 1978-2003

More than twice as much carbon is held in soils as in vegetation or the atmosphere, and changes in soil carbon content can have a large effect on the global carbon budget. The possibility that climate change is being reinforced by increased carbon dioxide emissions from soils owing to rising temperature is the subject of a continuing debate. But evidence for the suggested feedback mechanism has to date come solely from small-scale laboratory and field experiments and modelling studies. Here we use data from the National Soil Inventory of England and Wales obtained between 1978 and 2003 to show that carbon was lost from soils across England and Wales over the survey period at a mean rate of 0.6% yr(-1) (relative to the existing soil carbon content). We find that the relative rate of carbon loss increased with soil carbon content and was more than 2% yr(-1) in soils with carbon contents greater than 100 g kg(-1). The relationship between rate of carbon loss and carbon content is irrespective of land use, suggesting a link to climate change. Our findings indicate that losses of soil carbon in England and Wales--and by inference in other temperate regions-are likely to have been offsetting absorption of carbon by terrestrial sinks.

The potential for nitrification and nitrate uptake in the rhizosphere of wetland plants: a modelling study

BACKGROUND AND AIMS

It has recently found that lowland rice grown hydroponically is exceptionally efficient in absorbing NO3-, raising the possibility that rice and other wetland plants growing in flooded soil may absorb significant amounts of NO3- formed by nitrification of NH4+ in the rhizosphere. This is important because (a) this NO3- is otherwise lost through denitrification in the soil bulk; and (b) plant growth and yield are generally improved when plants absorb their nitrogen as a mixture of NO3- and NH4+ compared with growth on either N source on its own. A mathematical model is developed here with which to assess the extent of NO3- absorption from the rhizosphere by wetland plants growing in flooded soil, considering the important plant and soil processes operating.

METHODS

The model considers rates of O2 transport away from an individual root and simultaneous O2 consumption in microbial and non-microbial processes; transport of NH4+ towards the root and its consumption in nitrification and uptake at the root surface; and transport of NO3- formed from NH4+ towards the root and its consumption in denitrification and uptake by the root. The sensitivity of the model's predictions to its input parameters is tested over the range of conditions in which wetland plants grow.

KEY RESULTS

The model calculations show that substantial quantities of NO3- can be produced in the rhizosphere of wetland plants through nitrification and taken up by the roots under field conditions. The rates of NO3- uptake can be comparable with those of NH4+. The model also shows that rates of denitrification and subsequent loss of N from the soil remain small even where NO3- production and uptake are considerable.

CONCLUSIONS

Nitrate uptake by wetland plants may be far more important than thought hitherto. This has implications for managing wetland soils and water, as discussed in this paper.

Isotopic discrimination of zinc in higher plants

* The extent of isotopic discrimination of transition metals in biological processes is poorly understood but potentially has important applications in plant and biogeochemical studies. * Using multicollector inductively coupled plasma (ICP) mass spectrometry, we measured isotopic fractionation of zinc (Zn) during uptake from nutrient solutions by rice (Oryza sativa), lettuce (Lactuca sativa) and tomato (Lycopersicon esculentum) plants. * For all three species, the roots showed a similar extent of heavy Zn enrichment relative to the nutrient solution, probably reflecting preferential adsorption on external root surfaces. By contrast, a plant-species specific enrichment of the light Zn isotope occurred in the shoots, indicative of a biological, membrane-transport controlled uptake into plant cells. The extent of the fractionation in the shoots further depended on the Zn speciation in the nutrient solution. * The observed isotopic depletion in heavy Zn from root to shoot (-0.13 to -0.26 per atomic mass unit) is equivalent to roughly a quarter of the total reported terrestrial variability of Zn isotopic compositions (c. 0.84 per atomic mass unit). Plant uptake therefore represents an important source of isotopic variation in biogeochemical cycling of Zn.

Rice root properties for internal aeration and efficient nutrient acquisition in submerged soil

•  The characteristics of Oryza sativa roots required for internal aeration may conflict with those for efficient nutrient acquisition, particularly the surface area available for absorbing nutrients and the extent of oxygenation of the rhizosphere. •  A model was developed for calculating the steady-state diffusion of O₂ through a primary root and its laterals and the simultaneous consumption of O₂ in respiration and loss to the soil. Results for a realistic set of parameter values were compared with available experimental data, and a sensitivity analysis given. •  It was seen that a system of coarse, aerenchmymatous, primary roots with gas-impermeable walls conducting O₂ to short, fine, gas-permeable laterals (i.e. the basic architecture of current rice genotypes) provided the greatest absorbing surface per unit aerated root mass. •  With this architecture and typical rates of root respiration, rates of O₂ loss to the soil can be sufficient to, for example, nitrify sufficient NH₄ ⁺ to NO₃ ^- to allow a plant to absorb half its N as NO₃ ^- , as well as to oxidize toxins such as Fe²⁺ .

Comparative kinetic analysis of ammonium and nitrate acquisition by tropical lowland rice: implications for rice cultivation and yield potential

Nitrogen limitation compromises the realization of yield potential in cereals more than any other single factor. In rice, the world's most important crop species, the assumption has long been that only ammonium-N is efficiently utilized. Consequently, nitrate utilization has been largely ignored, although fragmentary data have suggested that growth could be substantial on nitrate. Using the short-lived radiotracer ¹³ N, we here provide direct comparisons of root transmembrane fluxes and cytoplasmic pool sizes for nitrate- and ammonium-N in a major variety of Indica rice (Oryza sativa), and show that nitrate acquisition is not only of high capacity and efficiency but is superior to that of ammonium. We believe our results have implications for rice breeding and molecular genetics as well as the design of water-management and fertilization regimes. Potential strategies to harness this hitherto unexplored N-utilization potential are proposed.

Effects of Hypoxia on 13NH4+ Fluxes in Rice Roots. Kinetics and compartmental analysis Kinetics and Compartmental Analysis

Techniques of compartmental (efflux) and kinetic influx analyses with the radiotracer 13NH4+ were used to examine the adaptation to hypoxia (15, 35, and 50% O2 saturation) of root N uptake and metabolism in 3-week-old hydroponically grown rice (Oryza sativa L., cv IR72) seedlings. A time-dependence study of NH4+ influx into rice roots after onset of hypoxia (15% O2) revealed an initial increase in the first 1 to 2.5 h after treatment imposition, followed by a decline to less than 50% of influx in control plants by 4 d. Efflux analyses conducted 0, 1, 3, and 5 d after the treatment confirmed this adaptation pattern of NH4+ uptake. Half-lives for NH4+ exchange with subcellular compartments, cytoplasmic NH4+ concentrations, and efflux (as percentage of influx) were unaffected by hypoxia. However, significant differences were observed in the relative amounts of N allocated to NH4+ assimilation and the vacuole versus translocation to the shoot. Kinetic experiments conducted at 100, 50, 35, and 15% O2 saturation showed no significant change in the Km value for NH4+ uptake with varying O2 supply. However, Vmax was 42% higher than controls at 50% O2 saturation, unchanged at 35%, and 10% lower than controls at 15% O2. The significance of these flux adaptations is discussed.

Root-induced iron oxidation, pH changes and zinc solubilization in the rhizosphere of lowland rice

Rice plants (Oryza sathiva L., cv. IR34) were grown with their roots sandwiched between cylinders of an anaerobic low-Zn Mollisol. After periods of root-soil contact of up to 12 d (total plant age c. 28 d) the profiles of different Zn fractions, reduced and oxidized Fe, and pH in the soil near the root plane' were determined. The concentration of easily plant-extractable Zn in the soil (measured by extraction in I M KCl) was negligible, and so it was necessary for the plants to induce changes in the soil to solubilize Zn. After 6 d, there was a substantial accumulation of Zn associated with organic matter and amorphous ferric hydroxide within 4-5 mm of the root plane. Over the next 6 d, the accumulation continued but there was a substantial depletion of the accumulated fractions within 2 mm of the root plane. The zones of accumulation and depletion coincided with zones of Fe(III) accumulation and soil acidification in which the pH decreased from the bulk soil value of 7.3 by over 0.2 pH units; i.e. a two-fold increase in H⁺ concentration, The acidification was the result of H⁺ released from the roots to balance excess intake of cations over anions, and H⁺ generated in the oxidation of Fe(H) by root-released O₂ . At the high pH and CO., pressure of the experimental soil (7.3 and c. 0.9 kPa. respectively), soil acidity diffusion is fast and consequently the pH drop at the root surface was small. The rate of Fe oxidation peaked before 6 d, but the acidification and Zn accumulation continued beyond 6 d unabated. It is concluded that Fe oxidation released Zn from highly insoluble fractions, and that this Zn was re-adsorbed on Fe(OH)₃ and on organic matter in forms that were acid-soluble and therefore accessible to the plants.

Root-induced solubilization of phosphate in the rhizosphere of lowland rice

Lowland rice (Oryza sativa L., cv IR74) was grown in cylinders of a P-deficient reduced Ultisol separated into upper and lower cells by a fine nylon mesh so that the roots formed a planar layer above the mesh. This enabled changes in soil P fractions and other root-induced changes in the soil near the root plane to be measured. In both P-fertilized and unfertilized soil, the quantity of readily plant-available P was negligible in comparison with the quantity of P extracted by the plants, and the plants therefore necessarily induced changes in the soil so as to solubilize P. After 6 wk of growth, 90 % of the P taken up was drawn from acid-soluble pools. The remainder was from an alkali-soluble inorganic pool which was on balance depleted, although its concentration profile contained zones of accumulation corresponding to zones of Fe(III) accumulation. There was also a small accumulation of alkali-soluble organic P. There were no changes in the more recalcitrant soil P pools. The zone of P depletion was 4-6 mm wide, increasing with P addition, and coincided with a zone of acidification in which the pH fell from near 6 in the soil bulk to less than 4 near the roots. The acidification was due to H⁺ generated in oxidation of Fe²⁺ by root-released O₂ , and to H⁺ released from the roots to balance excess intake of cations over anions. With increasing P deficiency there were increases in the ratio of root: shoot d. wt; the ratio of shoot d. wt to total P in the plant; the excess intake of cations over anions per unit plant d. wt and corresponding release of H⁺ to the soil; and the quantity of Fe oxidized per unit plant d. wt and corresponding release of H⁺ to the soil. Independent, in vitro measurements confirmed that acid addition increased the P concentration in the soil solution and the quantity of P that could be desorbed per gram of soil. A mathematical model of the diffusion of acid away from the roots, acid reaction with the soil in solubilizing P, and the diffusion of P back to the absorbing roots showed that, under the conditions of the root-plane experiments, solubilization by acidification accounted for at least 80% of the P taken up in both P-fertilized and unfertilized soil, but that less than 50% of the P solubilized could be taken up by the roots.

Root-induced iron oxidation and pH changes in the lowland rice rhizosphere

Measurements of profiles of ferrous and ferric iron and pH in blocks of reduced soil in contact with planar layers of rice (Oryza sativa L.) roots are reported. Initially 11-d-old plants were kept in contact with the soil for up to 12 d. Over this period, substantial quantities of iron were transferred towards the root plane, producing a well-defined zone of ferric hydroxide accumulation. The pH in this zone fell by more than two units. The profiles changed with time. The decrease in pH was in part due to protons generated in ferrous iron oxidation, and in part due to protons released from the roots to balance excess intake of cations over anions, N being taken up chiefly as NH₄ ⁺ . But the decrease in pH was less than expected from the net acid production in these two processes, possibly because of proton consumption in CO₂ uptake by the roots. Because of the pH-dependence of soil acidity diffusion, the two sources of acidity greatly reinforce each other. Some implications for nutrient and toxin dynamics are discussed.