Shining Light on Photobleaching: An Artifact That Causes Unnecessary Excitation Among Pathologists

CONTEXT.—

Photobleaching artifact occurs when fluorescence intensity decreases following light exposure. Slides stained with fluorescent techniques may be stored in the dark until primary diagnostics. Experimental evidence suggesting the rate of photobleaching and necessity of dark storage is lacking.

OBJECTIVE.—

To compare photobleaching rate on direct immunofluorescence and Thioflavin T slides stored in ambient room light conditions and exposed to excitatory wavelengths.

DESIGN.—

During 2 iterations of the experiment, 45 slides were prepared, 42 with immunofluorescent antibodies plus 3 with thioflavin, from skin and kidney biopsies. The experimental group was stored in room light conditions in comparison to the control in the dark, at room temperature. Further, 1 immunofluorescence slide and 1 thioflavin slide were exposed to excitatory fluorescent light for several hours. Significant photobleaching was defined as an integer decrease in score (scale, 0-3).

RESULTS.—

Exposure times ranged from 152 to 3034 hours. Nine of the 42 immunofluorescence slides (21%) photobleached after a minimum exposure of 152 hours to room light, with no significant difference between the experimental and control groups (all P values >.05). The immunofluorescence slide exposed to fluorescent light for 4 hours showed marked photobleaching in the exposed field but not elsewhere. No thioflavin slides showed clinically significant photobleaching under any conditions.

CONCLUSIONS.—

Clinically significant photobleaching of slides exposed to room light may occur after a few days, but not a few hours (unless exposed to excitatory fluorescent light). Conversely, thioflavin-stained slides did not photobleach when exposed to ambient room air and photobleached only negligibly when exposed to excitatory fluorescent light.

Significantly Improved Detection of Molecular Oxygen by Two-Color Resonance-Enhanced Multiphoton Ionization

We report a new spectroscopic detection scheme for molecular oxygen that achieves roughly two orders of magnitude higher sensitivity for fully rotationally resolved spectra than the current state of the art. Two-color (2 + 1') resonance-enhanced multiphoton ionization (REMPI) via the 3d Rydberg complex yields state-selective spectra with signal comparable to the intense but diffuse C 3sσ 3Πg ← X 3Σg- (2 + 1) REMPI bands without significant saturation or broadening. The resulting increase in sensitivity permitted observation of the very weak 3dπ 1Δ2 ← X 3Σg- transitions and is independent of the intermediate state. This advance in ionization efficiency and quantum state-selective sensitivity for O2 promises to aid physical and chemical studies across a wide variety of fields.

Thermochemical Studies of Small Carbohydrates

Despite their prevalence in biomass and importance in biochemistry, there is still much to be learned about simple carbohydrates. Gas-phase calculations are reported here on two trioses and three tetroses. For aldotetroses, both the open-chain and furanose forms are considered. Enthalpies of reduction to polyols are calculated at the CBS-APNO level of theory, and comparisons to simple aldehydes and ketones are made. Heats of formation are calculated in two ways with overall good agreement. The heat of formation of glyceraldehyde obtained from modified HEAT calculations is also reported. Finally, calculated bond energies are presented, and the influence of the structure on the bond energies is discussed.

Latency for All: Enabling Latency of Hoveyda-Grubbs Second-Generation Catalysts by Adding Phosphite Ligands

The Hoveyda-Grubbs catalyst (HG2, M720 Umicore) is among the most widely used catalysts in olefin metathesis reactions. Given the usefulness of HG2 and the great interest in developing latent olefin metathesis catalysts for numerous applications, we developed a method to introduce phosphite molecules as ancillary ligands into the precatalyst framework. This modification alters the geometry of the complex from an active trans-dichloro form to a latent cis-dichloro species. Most unusually, the ligands coordinate to HG2 only in solidified solutions (most likely due to entropic factors), providing latent catalysts that can be activated on demand by heat or light by regenerating the original HG2 catalyst. Of particular interest is the use of these latent catalysts in ring-opening metathesis polymerization (ROMP) reactions and 3D printing methods. Indeed, the novel complexes displayed the required latency toward ROMP monomers, even the most reactive dicyclopentadiene. Irradiation with 405 nm light readily results in the expedited formation of the desired polymers. This novel approach provides a general and straightforward way to access efficient and well-defined latent olefin metathesis catalysts.

Structural and electronic trends of optical cycling centers in polyatomic molecules revealed by microwave spectroscopy of MgCCH, CaCCH, and SrCCH

The unique optical cycling efficiency of alkaline earth metal-ligand molecules has enabled significant advances in polyatomic laser cooling and trapping. Rotational spectroscopy is an ideal tool for probing the molecular properties that underpin optical cycling, thereby elucidating the design principles for expanding the chemical diversity and scope of these platforms for quantum science. We present a comprehensive study of the structure and electronic properties in alkaline earth metal acetylides with high-resolution microwave spectra of 17 isotopologues of MgCCH, CaCCH, and SrCCH in their 2Σ+ ground electronic states. The precise semiexperimental equilibrium geometry of each species has been derived by correcting the measured rotational constants for electronic and zero-point vibrational contributions calculated with high-level quantum chemistry methods. The well-resolved hyperfine structure associated with the 1,2H, 13C, and metal nuclear spins provides further information on the distribution and hybridization of the metal-centered, optically active unpaired electron. Together, these measurements allow us to correlate trends in chemical bonding and structure with the electronic properties that promote efficient optical cycling essential to next-generation experiments in precision measurement and quantum control of complex polyatomic molecules.

Direct Observation of the Ethyl Radical in the Pyrolysis of Ethane

We report the first direct detection of ethyl radical in the pyrolysis of ethane. Observation of this vital intermediate was made possible in this extremely reactive environment by the use of a microreactor coupled with synchrotron radiation and  photoelectron photoion coincidence (PEPICO) spectroscopy, despite its short lifetime and low concentration. Together with ab initio master equation calculated rates and fully coupled computational fluid dynamics simulations, our measurements show that even under the low pressures and short residence times in our experiment, ethyl formation can only be explained by bimolecular reactions; the most important is the catalytic attack of ethane by H atoms, which are then regenerated by decomposition of the nascent ethyl radicals.  Our results complete the observation of all hypothesized intermediates in this industrially important process, and highlight the need for further studies under additional conditions using similar methods to improve existing models and optimize process chemistries.

Ionization energies and ionization-induced structural changes in 2-phenylethylamine and its monohydrate

We report the resonance-enhanced two-photon ionization combined with various detection approaches and quantum chemical calculations of biologically relevant neurotransmitter prototypes, the most stable conformer of 2-phenylethylamine (PEA), and its monohydrate, PEA-H₂O, to reveal the possible interactions between the phenyl ring and amino group in the neutral and ionic species. Extracting the ionization energies (IEs) and appearance energy was achieved by measuring the photoionization and photodissociation efficiency curves of the PEA parent and photofragment ions, together with velocity and kinetic energy-broadened spatial map images of photoelectrons. We obtained coinciding upper bounds for the IEs for PEA and PEA-H₂O of 8.63 ± 0.03 and 8.62 ± 0.04 eV, within the range predicted by quantum calculations. The computed electrostatic potential maps show charge separation, corresponding to a negative charge on phenyl and a positive charge on the ethylamino side chain in the neutral PEA and its monohydrate; in the cations, the charge distributions naturally become positive. The significant changes in geometries upon ionization include switching of the amino group orientation from pyramidal to nearly planar in the monomer but not in the monohydrate, lengthening of the N-H⋯π hydrogen bond (HB) in both species, C_α-C_β bond in the side chain of the PEA⁺ monomer, and the intermolecular O-H⋯N HB in PEA-H₂O cations, leading to distinct exit channels.

Multispectral and Circular Polarization-Sensitive Carbon Dot-Polydiacetylene Capacitive Photodetector

Multispectral photodetectors (MSPs) and circularly polarized light (CPL) sensors are important in opto-electronics, photonics, and imaging. A capacitive photodetector consisting of an interdigitated electrode coated with carbon dot/anthraquinone-polydiacetylene is constructed. Photoexcitation of the carbon dots induces transient electron transfer to the anthraquinone moieties, and concomitant change in the film dielectric constant and recorded capacitance. This unique photodetection mechanism furnishes wavelength selectivity that is solely determined by the absorbance of the carbon dots incorporated in the anthraquinone-polydiacetylene matrix. Accordingly, employing an array of polymerized-anthraquinone photodetector films comprising carbon dots (C-dots) exhibiting different excitation wavelengths yielded optical "capacitive fingerprints" in a broad spectral range (350-650 nm). Furthermore, circular light polarization selectivity is achieved through chiral polymerization of the polydiacetylene framework. The carbon dot/anthraquinone-polydiacetylene capacitive photodetector features rapid photo-response, high fidelity, and recyclability as the redox reactions of anthraquinone are fully reversible. The carbon dot/anthraquinone-polydiacetylene platform is inexpensive, easy to fabricate, and consists of environmentally friendly materials.

Ring-Opening Dynamics of the Cyclopropyl Radical and Cation: the Transition State Nature of the Cyclopropyl Cation

We provide compelling experimental and theoretical evidence for the transition state nature of the cyclopropyl cation. Synchrotron photoionization spectroscopy employing coincidence techniques together with a novel simulation based on high-accuracy ab initio calculations reveal that the cation is unstable via its allowed disrotatory ring-opening path. The ring strains of the cation and the radical are similar, but both ring opening paths for the radical are forbidden when the full electronic symmetries are considered. These findings are discussed in light of the early predictions by Longuet-Higgins alongside Woodward and Hoffman; we also propose a simple phase space explanation for the appearance of the cyclopropyl photoionization spectrum. The results of this work allow the refinement of the cyclopropane C-H bond dissociation energy, in addition to the cyclopropyl radical and cation cyclization energies, via the Active Thermochemical Tables approach.

Franck-Condon spectra of unbound and imaginary-frequency vibrations via correlation functions: a branch-cut free, numerically stable derivation

Molecular electronic spectra can be represented in the time domain as auto-correlation functions of the initial vibrational wavepacket. We present a derivation of the harmonic vibrational auto-correlation function that is valid for both real and imaginary harmonic frequencies. The derivation rests on Lie algebra techniques that map otherwise complicated exponential operator arithmetic to simpler matrix formulae. The expressions for the zero- and finite-temperature harmonic auto-correlation functions have been carefully structured both to be free of branch-cut discontinuities and to remain numerically stable with finite-precision arithmetic. Simple extensions correct the harmonic Franck-Condon approximation for the lowest-order anharmonic and Herzberg-Teller effects. Quantitative simulations are shown for several examples, including the electronic absorption spectra of F2, HOCl, CH2NH, and NO2.

Maximal kinetic energy and angular distribution analysis of spatial map imaging: Application to photoelectrons from a single quantum state of H2O

Dynamical or spatial properties of charged species can be obtained using electrostatic lenses by velocity map imaging (VMI) or spatial map imaging (SMI), respectively. Here, we report an approach for extracting dynamical and spatial information from patterns in SMI images that map the initial coordinates, velocity vectors, and angular distributions of charged particles onto the detector, using the same apparatus as in VMI. Deciphering these patterns required analysis and modeling, involving both their predictions from convolved spatial and velocity distributions and fitting observed images to kinetic energies (KEs) and anisotropy parameters (βs). As the first demonstration of this capability of SMI, the ensuing photoelectrons resulting from (2 + 1) resonant ionization of water in a selected rotational state were chosen to provide a rigorous basis for comparison to VMI. Operation with low acceleration voltages led to a measured SMI pattern with a unique vertical intensity profile that could be least-squares fitted to yield KE and β, in good agreement with VMI measurement. Due to the potential for improved resolution and the extended KE range achievable by this new technique, we expect that it might augment VMI in applications that require the analysis of charged particles and particularly in processes with high KE release.

Decomposition of the simplest ketohydroperoxide in the ozonolysis of ethylene

Hydroperoxides from the ozonolysis of alkenes, in addition to Criegee intermediates, have been proposed as an atmospheric source of OH radicals in the absence of sunlight, but have remained largely elusive due to their reactivity. A weak peroxide bond enables facile OH elimination, and subsequent β-scission can lead to a variety of decomposition products depending on the nature of the peroxide. In this paper we explore this process theoretically for the simplest ketohydroperoxide, hydroperoxyacetaldehyde (HPA), which is believed to be formed in the ozonolysis of ethylene. Despite it being the most stable C₂H₄O₃ species in this reaction scheme, lower in energy than the starting materials by around 100 kcal mol^-1, HPA has only been directly observed once in the ozonolysis of ethylene by photoionization mass spectrometry appearance energy. Here we report predictions of the rotational spectrum of HPA conducted in support of microwave spectroscopy experiments. We suggest a new dissociation path from HPA to glyoxal [HOOCH₂CHO → HCOCH₂O + OH → CHOCHO + H], supported by thermochemical calculations. We encourage the search for glyoxal using complementary experimental methods, and suggest possible future experimental directions. Evidence of glyoxal formation from ethylene ozonolysis might provide evidence of this underappreciated path in an important and long studied reaction system.

Rotational Characterization of the Elusive gauche-Isoprene

Isoprene (2-methyl-1,3-butadiene) is highly abundant in the atmosphere, second only to methane in hydrocarbon emissions. In contrast to the most stable trans rotamer, structural characterization of gauche-isoprene has proven challenging: it is weakly polar, present at the level of only a few percent at room temperature, and structurally complex due to both torsional and methyl tunneling motions. gauche-Isoprene has been observed by two distinct but complementary experimental approaches: chirped-pulse Fourier transform microwave (CP-FTMW) spectroscopy coupled with cryogenic buffer gas cooling, and cavity-enhanced FTMW spectroscopy with a pulsed discharge source. Thermal enhancement of the gauche population (from 1.7% to 10.3%) was observed in the cryogenic buffer gas cell when the sample was preheated from 300 to 450 K, demonstrating that high-energy rotamers can be efficiently isolated under our experimental conditions. Rotational parameters for the inversion states (0⁺/0^-) have been determined for the first time, aided by calculations at increasing levels of theoretical sophistication. From this combined analysis, the inversion splitting Δ E and the F_bc Coriolis coupling constant between the two inversion states have been derived.

The Hunt for Elusive Molecules: Insights from Joint Theoretical and Experimental Investigations

Rotational spectroscopy is an invaluable tool to unambiguously determine the molecular structure of a species, and sometimes even to establish its very existence. This article illustrates how experimental and theoretical state-of-the-art tools can be used in tandem to investigate the rotational structure of molecules, with particular emphasis on those that have long remained elusive. The examples of three emblematic species-gauche-butadiene, disilicon carbide, and germanium dicarbide-highlight the close, mutually beneficial interaction between high-level theoretical calculations and sensitive microwave measurements. Prospects to detect other elusive molecules of chemical and astronomical interest are discussed.

Thermal Decomposition of Potential Ester Biofuels. Part I: Methyl Acetate and Methyl Butanoate

Two methyl esters were examined as models for the pyrolysis of biofuels. Dilute samples (0.06-0.13%) of methyl acetate (CH₃COOCH₃) and methyl butanoate (CH₃CH₂CH₂COOCH₃) were entrained in (He, Ar) carrier gas and decomposed in a set of flash-pyrolysis microreactors. The pyrolysis products resulting from the methyl esters were detected and identified by vacuum ultraviolet photoionization mass spectrometry. Complementary product identification was provided by matrix infrared absorption spectroscopy. Pyrolysis pressures in the pulsed microreactor were about 20 Torr and residence times through the reactors were roughly 25-150 μs. Reactor temperatures of 300-1600 K were explored. Decomposition of CH₃COOCH₃ commences at 1000 K, and the initial products are (CH₂═C═O and CH₃OH). As the microreactor is heated to 1300 K, a mixture of CH₂═C═O and CH₃OH, CH₃, CH₂═O, H, CO, and CO₂ appears. The thermal cracking of CH₃CH₂CH₂COOCH₃ begins at 800 K with the formation of CH₃CH₂CH═C═O and CH₃OH. By 1300 K, the pyrolysis of methyl butanoate yields a complex mixture of CH₃CH₂CH═C═O, CH₃OH, CH₃, CH₂═O, CO, CO₂, CH₃CH═CH₂, CH₂CHCH₂, CH₂═C═CH₂, HCCCH₂, CH₂═C═C═O, CH₂═CH₂, HC≡CH, and CH₂═C═O. On the basis of the results from the thermal cracking of methyl acetate and methyl butanoate, we predict several important decomposition channels for the pyrolysis of fatty acid methyl esters, R-CH₂-COOCH₃. The lowest-energy fragmentation will be a 4-center elimination of methanol to form the ketene RCH═C═O. At higher temperatures, concerted fragmentation to radicals will ensue to produce a mixture of species: (RCH₂ + CO₂ + CH₃) and (RCH₂ + CO + CH₂═O + H). Thermal cracking of the β C-C bond of the methyl ester will generate the radicals (R and H) as well as CH₂═C═O + CH₂═O. The thermochemistry of methyl acetate and its fragmentation products were obtained via the Active Thermochemical Tables (ATcT) approach, resulting in Δ_fH₂₉₈(CH₃COOCH₃) = -98.7 ± 0.2 kcal mol^-1, Δ_fH₂₉₈(CH₃CO₂) = -45.7 ± 0.3 kcal mol^-1, and Δ_fH₂₉₈(COOCH₃) = -38.3 ± 0.4 kcal mol^-1.

An optically accessible pyrolysis microreactor

We report an optically accessible pyrolysis micro-reactor suitable for in situ laser spectroscopic measurements. A radiative heating design allows for completely unobstructed views of the micro-reactor along two axes. The maximum temperature demonstrated here is only 1300 K (as opposed to 1700 K for the usual SiC micro-reactor) because of the melting point of fused silica, but alternative transparent materials will allow for higher temperatures. Laser induced fluorescence measurements on nitric oxide are presented as a proof of principle for spectroscopic characterization of pyrolysis conditions.

Probing cis-trans isomerization in the S1 state of C2H2 via H-atom action and hot band-pumped IR-UV double resonance spectroscopies

We report novel experimental strategies that should prove instrumental in extending the vibrational and rotational assignments of the S1 state of acetylene, C2H2, in the region of the cis-trans isomerization barrier. At present, the assignments are essentially complete up to ∼500 cm(-1) below the barrier. Two difficulties arise when the assignments are continued to higher energies. One is that predissociation into C2H + H sets in roughly 1100 cm(-1) below the barrier; the resulting quenching of laser-induced fluorescence (LIF) reduces its value for recording spectra in this region. The other difficulty is that tunneling through the barrier causes a staggering in the K-rotational structure of isomerizing vibrational levels. The assignment of these levels requires data for K values up to at least 3. Given the rotational selection rule K' - ℓ('') = ± 1, such data must be obtained via excited vibrational levels of the ground state with ℓ('') > 0. In this paper, high resolution H-atom resonance-enhanced multiphoton ionization spectra are demonstrated to contain predissociated bands which are almost invisible in LIF spectra, while preliminary data using a hyperthermal pulsed nozzle show that ℓ('') = 2 states can be selectively populated in a jet, giving access to K' = 3 states in IR-UV double resonance.

Communication: Observation of local-bender eigenstates in acetylene

We report the observation of eigenstates that embody large-amplitude, local-bending vibrational motion in acetylene by stimulated emission pumping spectroscopy via vibrational levels of the S1 state involving excitation in the non-totally symmetric bending modes. The N(b) = 14 level, lying at 8971.69 cm(-1) (J = 0), is assigned on the basis of degeneracy due to dynamical symmetry breaking in the local-mode limit. The level pattern for the N(b) = 16 level, lying at 10 218.9 cm(-1), is consistent with expectations for increased separation of ℓ = 0 and 2 vibrational angular momentum components. Increasingly poor agreement between our observations and the predicted positions of these levels highlights the failure of currently available normal mode effective Hamiltonian models to extrapolate to regions of the potential energy surface involving large-amplitude displacement along the acetylene ⇌ vinylidene isomerization coordinate.

Observation of Translation-to-Vibration Excitation in Acetylene Scattering from Au(111): A REMPI Based Approach

We present quantum-state and velocity resolved experiments for molecular beam scattering of acetylene (C2H2) from a single-crystal Au(111) surface, observations that reveal translational, rotational and vibrational inelasticity. The experiments are made possible by a novel (1 + 2) REMPI scheme for acetylene. The scattered molecules' velocity distributions as well as their ro-vibrational quantum-state distributions depend on the translational energy of incidence, E I, providing unambiguous evidence that the scattered molecules were not trapped and equilibrated on the surface. We report the E I-dependence of the collisional excitation of one and two quanta of the trans-bending vibrational mode, ν 4 = 0 → 1, 2, which is consistent with a mechanism involving conversion of incidence translational energy to acetylene vibration. Rotationally resolved velocity measurements on scattered acetylene in its ground vibrational state are interpreted in terms of orientation-dependent rotational and vibrational excitation probabilities.

Discovery of SiCSi in IRC +10216: A missing link between gas and dust carriers of Si-C bonds

We report the discovery in space of a disilicon species, SiCSi, from observations between 80 and 350 GHz with the IRAM 30m radio telescope. Owing to the close coordination between laboratory experiments and astrophysics, 112 lines have now been detected in the carbon-rich star CW Leo. The derived frequencies yield improved rotational and centrifugal distortion constants up to sixth order. From the line profiles and interferometric maps with the Submillimeter Array, the bulk of the SiCSi emission arises from a region of 6″ in radius. The derived abundance is comparable to that of SiC2. As expected from chemical equilibrium calculations, SiCSi and SiC2 are the most abundant species harboring a Si-C bond in the dust formation zone and certainly both play a key role in the formation of SiC dust grains.

Discovery of a Missing Link: Detection and Structure of the Elusive Disilicon Carbide Cluster

The rotational spectrum of the elusive but fundamentally important silicon carbide SiCSi has been detected using sensitive microwave techniques aided by high-level ab initio methods. Its equilibrium structure has been determined to very high precision using isotopic substitution and vibrational corrections calculated quantum-chemically: it is an isosceles triangle with a Si-C bond length of 1.693(1) Å, and an apex angle of 114.87(5)°. Now that all four Si(m)C(n) clusters with m + n = 3 have been observed experimentally, their structure and chemical bonding can be rigorously compared. Because Si2C is so closely linked to other Si-bearing molecules that have been detected in the evolved carbon star IRC+10216, it is an extremely promising candidate for detection with radio telescopes.

Simplified Cartesian basis model for intrapolyad emission intensities in the bent-to-linear electronic transition of acetylene

The acetylene emission spectrum from the trans-bent electronically excited à state to the linear ground electronic X̃ state has attracted considerable attention because it grants Franck–Condon access to local bending vibrational levels of the X̃ state with large-amplitude motion along the acetylene ⇌ vinylidene isomerization coordinate. For emission from the ground vibrational level of the à state, there is a simplifying set of Franck–Condon propensity rules that gives rise to only one zero-order bright state per conserved vibrational polyad of the X̃ state. Unfortunately, when the upper level involves excitation in the highly admixed ungerade bending modes, ν4′ and ν6′, the simplifying Franck–Condon propensity rule breaks down--as long as the usual polar basis (with v and l quantum numbers) is used to describe the degenerate bending vibrations of the X̃ state--and the intrapolyad intensities result from complicated interference patterns between many zero-order bright states. In this article, we show that, when the degenerate bending levels are instead treated in the Cartesian two-dimensional harmonic oscillator basis (with vx and vy quantum numbers), the propensity for only one zero-order bright state (in the Cartesian basis) is restored, and the intrapolyad intensities are simple to model, as long as corrections are made for anharmonic interactions. As a result of trans ⇌ cis isomerization in the à state, intrapolyad emission patterns from overtones of ν4′ and ν6′ evolve as quanta of trans bend (ν3′) are added, so the emission intensities are not only relevant to the ground-state acetylene ⇌ vinylidene isomerization, they are also a direct reporter of isomerization in the electronically excited state.

In vivo comparative study of RNAi methodologies by in ovo electroporation in the chick embryo

The combination of emergent RNA interference (RNAi) technology with in ovo electroporation in the chick embryo has the potential to provide a powerful and rapid means for functional analyses of novel genes in vivo. In this study, we show that electroporation of short 21-bp RNA duplexes (siRNAs) is a quick and simple method for silencing exogenous and endogenous gene expression in vivo. Quantitative comparisons with two other RNAi protocols that use long double-stranded RNA duplexes and endonuclease-digested duplexes (esiRNAs) demonstrate that siRNAs are significantly more effective at reducing gene expression. Furthermore, we also find that much higher amounts of siRNA are required for silencing of endogenous gene expression relative to plasmid-borne reporter constructs. In short, these results demonstrate that siRNAs are the most effective type of double-stranded RNA duplex for silencing gene expression and suggest that there might be important differences between silencing endogenous and exogenous genes. Finally, we review the parameters for each of these RNA-based methods of RNAi and the controls required to analyze RNAi data in the context of the developing vertebrate embryo.