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Frolova L, Blyuss B. Investigation of Cr(III) adsorption in aqueous solution using bentonite. Appl Nanosci 2023. [DOI: 10.1007/s13204-023-02767-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Frolova L, Sukhyy K. Investigation of the ferritization process in the Co2+–Fe2+–SO42−–OH− system under the action of contact non-equilibrium low-temperature plasma. Appl Nanosci 2022. [DOI: 10.1007/s13204-021-01755-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Frolova L, Kharytonov M, Klimkina I, Kovrov O, Koveria A. Investigation of the adsorption of ions chromium by mean biochar from coniferous trees. Appl Nanosci 2022. [DOI: 10.1007/s13204-021-01995-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Birkun A, Frolova L. Training prevalence, knowledge and attitudes towards cardiopulmonary resuscitation: a survey amongst 5,921 preschool and school teachers. Eur Heart J 2021. [DOI: 10.1093/eurheartj/ehab724.1501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Purpose
Preschool and school teachers could play an important role both in training children in cardiopulmonary resuscitation (CPR) and in providing necessary help in case of witnessing an emergency. This study aimed to investigate prevalence of CPR training, CPR knowledge, attitudes and willingness to perform CPR among preschool and school teachers in the territory of the Republic of Crimea, in the northern Black Sea region.
Methods
An anonymous online questionnaire survey was conducted in February–March 2021 utilizing Google Forms. In particular, the participants were asked to rate their knowledge of CPR and willingness to perform CPR (on a stranger, a pupil or a loved one) on a 5-point scale, and to indicate recommended chest compression rate and hand position for compressions.
Results
Out of 5,921 surveyed teachers, 3,765 (64%) reported previous CPR training. Among the trained, 55% attended training more than one year ago, 44% completed a CPR training course once. Reasons for not being trained were most commonly reported as “never thought about the need to go for training” (42%), “nobody demanded me to get trained” (38%) or “did not know where to attend the training” (21%). Self-perceived knowledge of CPR was rated as follows: very good – 0.4%, good – 7.8%, moderate – 37.8%, poor – 44.6%, absent – 9.4%. Hand position for giving chest compressions was indicated correctly by 66% participants, compression rate – by 16% respondents. Correct answering to the questions and higher self-perceived knowledge were associated with previous CPR training (p<0.001). 54% reported they wish to get trained in CPR. 28% confirmed readiness to teach CPR as part of their extracurricular work (provided that they will get preliminary training, and upon availability of proper training supplies and instructional program). Proportion of respondents who expressed high willingness to attempt CPR (4–5 points) on a stranger, a pupil or a loved one amounted to 35%, 41% and 64%, respectively, mean level or readiness to perform CPR – 3.0, 3.1 and 3.8 points, respectively. Willingness to perform CPR was positively associated with previous CPR training and level of CPR knowledge (p<0.001). Fear to cause harm to a victim and lack of CPR knowledge and skills were most commonly reported as the strongest barriers to attempt CPR (reported by 49–51% and 31–36% respondents, respectively, depending on the type of supposed victim).
Conclusions
Coverage of the preschool and school teachers with recent CPR training is limited, levels of knowledge and self-confidence in CPR are generally low. Lack of competence impede readiness of the teachers to attempt CPR. There is a demand in enhancing involvement of teachers in CPR training and retraining in the Republic of Crimea. Most teachers want to get trained in CPR, and almost one third agree to teach CPR themselves, suggesting a reasonable way to improve availability of CPR training for both teachers and pupils.
Funding Acknowledgement
Type of funding sources: None.
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Affiliation(s)
- A Birkun
- Medical Academy named after S. I. Georgievsky of V. I. Vernadsky Crimean Federal University, Simferopol, Russian Federation
| | - L Frolova
- Crimean Republican Center of Disaster Medicine and Emergency Medical Services, Simferopol, Russian Federation
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Gomes PV, Shen S, Hill M, Flynn K, Marquez M, Frolova L, Kandel JJ, Tartis M, Hernandez SL. Abstract 1729: Novel liposomal topotecan formulation has a lower IC50 than the free form on neuroblastoma cells. Cancer Res 2020. [DOI: 10.1158/1538-7445.am2020-1729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Introduction: Neuroblastomas (NB) are the most common solid tumor in children and infants, and are frequently resistant to all standard therapies. Patients are accordingly vulnerable to acute and long-term systemic effects of toxic chemotherapy. These drugs target rapidly dividing cells throughout the body, leading to severe side effects. One strategy to reduce off-target toxicities is to selectively increase drug uptake in the tumor. In pilot studies, we found that microbubbles containing liposomal doxorubicin, an agent that is effective against NB, and focused ultrasound (sonoporation) increased doxorubicin uptake in NB xenografts. However, NB is typically treated with multidrug chemotherapy, raising the importance of testing additional agents. In these studies, we evaluated a novel liposomal formulation of topotecan, an agent used in NB treatment which is both effective and associated with significant systemic toxicities. In vitro studies are needed to determine the IC50 (concentration of the drug needed to reduce the number of live cells by half). A required esterase cleavage at the delivery site can inhibit liposome encapsulated drug release. Therefore, we hypothesized that liposomal topotecan (2T-T) would have a higher IC50 than free topotecan.
Methods: We tested the effect of 2T-T on nine different NB cell lines:LA1-55n, LA-1-5S, LAN-5, NGP, SK-N-AS, BE2, SHEP, NBL-WN, and SH-SY5Y;five N-type (invasive), three S-type (noninvasive), seven MYCN-amplified (poor prognosis). We have tested free topotecan in 3 of these (LA-1-5S, NBL-WN, SH-SY5Y). Cells were plated in full RPMI at 80% confluence. 2T-T or topotecan (0 to 50 uM) were added to cells 24 hours later for 72 hours. Viable cells were estimated using a WST cell counting kit. 50uM empty liposomes and lysis buffer were used as controls. Experiments were performed in triplicate, with p≥0.05deemed significant (student t-test or ratio-paired t-test using PRISM).
Results: 2T-T had a mean IC50 of 0.37±0.58uM(mean R2=0.9±0.07).Empty liposomes caused no cytotoxicity in any cell line. We found no difference in IC50 according to S or N type (0.50±0.65vs 0.35±0.58(p=ns)). The mean IC50 of MYCN-amplified cells was 0.47±0.63,while that of non-MYCN-amplified was 0.031±0.029(n=2), suggesting no difference in cytotoxicity based on MYCN status. 2T-T had a 2 fold lower IC50 than free topotecan (1.14±1.19vs 0.48±0.82,p=0.046), suggesting liposomes did not inhibit topotecan release.
Conclusion: These findings suggest that liposomal topotecan (T2-T) has a lower IC50 than free topotecan in NB, and that MYCN amplification and phenotype do not modify 2T-T cytotoxicity. Our results suggest that liposomal encapsulation does not inhibit topotecan release, but could increase its cytotoxicity by increasing topotecan half-life. We predict that, in vivo 2T-T could reduce toxicities and side effects, warranting the investigation of 2T-T sonoporation in NB xenografts.
Citation Format: Paula Viza Gomes, Stephanie Shen, Meghan Hill, Kilkee Flynn, Mendi Marquez, Liliya Frolova, Jessica J. Kandel, Michaelann Tartis, Sonia L. Hernandez. Novel liposomal topotecan formulation has a lower IC50 than the free form on neuroblastoma cells [abstract]. In: Proceedings of the Annual Meeting of the American Association for Cancer Research 2020; 2020 Apr 27-28 and Jun 22-24. Philadelphia (PA): AACR; Cancer Res 2020;80(16 Suppl):Abstract nr 1729.
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Affiliation(s)
| | | | - Meghan Hill
- 2New Mexico Institute of Mining and Technology, Socorro, NM
| | - Kilkee Flynn
- 2New Mexico Institute of Mining and Technology, Socorro, NM
| | - Mendi Marquez
- 2New Mexico Institute of Mining and Technology, Socorro, NM
| | - Liliya Frolova
- 2New Mexico Institute of Mining and Technology, Socorro, NM
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Maslivetc VA, Turner DN, McNair KN, Frolova L, Rogelj S, Maslivetc AA, Aksenov NA, Rubina M, Rubin M. Desymmetrization of Cyclopropenes via the Potassium-Templated Diastereoselective 7- exo- trig Cycloaddition of Tethered Amino Alcohols toward Enantiopure Cyclopropane-Fused Oxazepanones with Antimycobacterial Activity. J Org Chem 2018; 83:5650-5664. [PMID: 29696970 DOI: 10.1021/acs.joc.8b00640] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
A strain-release-driven, cation-templated intramolecular nucleophilic addition of tethered alkoxides to prochiral cyclopropenes is described. Employment of chiral β- and γ-amino alkoxides allowed for highly diastereoselective assembly of a small series of enantiopure cyclopropane-fused oxazepanones. It was shown that the chiral center at C-4 plays a crucial role in controlling desymmetrization of the cyclopropenyl moiety, instigated by a profound potassium-templated effect. The preliminary biological activities of the new cyclopropane-fused medium heterocycles against Gram-positive bacteria, Gram-negative bacteria, mycobacteria, cancer cells, and fungus were evaluated.
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Affiliation(s)
- Vladimir A Maslivetc
- Department of Chemistry , University of Kansas , 1251 Wescoe Hall Drive , Lawrence , Kansas 66045-7582 , United States
| | - Danielle N Turner
- Departments of Chemistry and Biology , New Mexico Institute of Mining and Technology , Socorro , New Mexico 87801 , United States
| | - Kimberly N McNair
- Departments of Chemistry and Biology , New Mexico Institute of Mining and Technology , Socorro , New Mexico 87801 , United States
| | - Liliya Frolova
- Departments of Chemistry and Biology , New Mexico Institute of Mining and Technology , Socorro , New Mexico 87801 , United States
| | - Snezna Rogelj
- Departments of Chemistry and Biology , New Mexico Institute of Mining and Technology , Socorro , New Mexico 87801 , United States
| | - Anna A Maslivetc
- Department of Chemistry , University of Kansas , 1251 Wescoe Hall Drive , Lawrence , Kansas 66045-7582 , United States
| | - Nicolai A Aksenov
- Department of Chemistry , North Caucasus Federal University , 1a Pushkin St. , Stavropol 355009 , Russian Federation
| | - Marina Rubina
- Department of Chemistry , University of Kansas , 1251 Wescoe Hall Drive , Lawrence , Kansas 66045-7582 , United States
| | - Michael Rubin
- Department of Chemistry , University of Kansas , 1251 Wescoe Hall Drive , Lawrence , Kansas 66045-7582 , United States.,Department of Chemistry , North Caucasus Federal University , 1a Pushkin St. , Stavropol 355009 , Russian Federation
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Abstract
The possibility of obtaining brown pigments with the use of blast furnace slag from waste water containing nickel is justified. The scheme of the main reactions is proposed. The kinetics of the reactions is studied. The contribution of the chemical interaction into the overall degree of treatment is established by potentiometric titration. The influence of the main factors on the degree of nickel extraction is determined. The phase composition of the formed pigment is established with the help of X-ray analysis. Rheological properties of the pigment particles are set. The main color characteristics of the obtained products are identified by visual and spectrophotometric way. X-ray microanalysis indicated the presence of the two phases in the obtained precipitate. Dispersed and phase compositions of the original slag determine the rheological properties of the pigment. By varying the synthesis parameters, the obtained patterns provide us with possibility of receiving pigments of the color from light brown to deep brown.
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9
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Daly S, Hayden K, Malik I, Porch N, Tang H, Rogelj S, Frolova L, Lepthien K, Kornienko A, Magedov IV. Unprecedented C-2 arylation of indole with diazonium salts: Syntheses of 2,3-disubstituted indoles and their antimicrobial activity. Bioorg Med Chem Lett 2011; 21:4720-3. [PMID: 21752646 PMCID: PMC3233240 DOI: 10.1016/j.bmcl.2011.06.081] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2011] [Revised: 06/15/2011] [Accepted: 06/17/2011] [Indexed: 10/18/2022]
Abstract
A novel reaction of indole with aryldiazonium salts leading to the formation of 2-aryl-3-(arylazo)indoles was discovered. The products were found to possess potent anti-MRSA and anti-LLVRE activities. The SAR studies indicate that the potentially metabolically labile azo functionality can be replaced with ether oxygen and thioether sulfur atoms without any loss of activity.
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Affiliation(s)
- Seth Daly
- Department of Biology, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Kathryn Hayden
- Department of Biology, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Indranil Malik
- Department of Biology, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Nikki Porch
- Department of Biology, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Hong Tang
- Department of Biology, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Snezna Rogelj
- Department of Biology, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Liliya Frolova
- Department of Chemistry, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Katrina Lepthien
- Department of Chemistry, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Alexander Kornienko
- Department of Chemistry, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
| | - Igor V. Magedov
- Department of Chemistry, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, USA
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Magedov IV, Frolova L, Manpadi M, Bhoga UD, Tang H, Evdokimov NM, George O, Georgiou KH, Renner S, Getlik M, Kinnibrugh TL, Fernandes MA, Van slambrouck S, Steelant WFA, Shuster CB, Rogelj S, van Otterlo WAL, Kornienko A. Anticancer properties of an important drug lead podophyllotoxin can be efficiently mimicked by diverse heterocyclic scaffolds accessible via one-step synthesis. J Med Chem 2011; 54:4234-46. [PMID: 21615090 DOI: 10.1021/jm200410r] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Structural simplification of an antimitotic natural product podophyllotoxin with mimetic heterocyclic scaffolds constructed using multicomponent reactions led to the identification of compounds exhibiting low nanomolar antiproliferative and apoptosis-inducing properties. The most potent compounds were found in the dihydropyridopyrazole, dihydropyridonaphthalene, dihydropyridoindole, and dihydropyridopyrimidine scaffold series. Biochemical mechanistic studies performed with dihydropyridopyrazole compounds showed that these heterocycles inhibit in vitro tubulin polymerization and disrupt the formation of mitotic spindles in dividing cells at low nanomolar concentrations, in a manner similar to podophyllotoxin itself. Separation of a racemic dihydropyridonaphthalene into individual enantiomers demonstrated that only the optical antipode matching the absolute configuration of podophyllotoxin possessed potent anticancer activity. Computer modeling, performed using the podophyllotoxin binding site on β-tubulin, provided a theoretical understanding of these successful experimental findings.
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Affiliation(s)
- Igor V Magedov
- Department of Chemistry, New Mexico Institute of Mining and Technology, Socorro, New Mexico 87801, United States.
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Tlaskalova-Hogenova H, Tuckova L, Mestecky J, Kolinska J, Rossmann P, Stepankova R, Kozakova H, Hudcovic T, Hrncir T, Frolova L, Kverka M. Interaction of mucosal microbiota with the innate immune system. Scand J Immunol 2005; 62 Suppl 1:106-13. [PMID: 15953193 DOI: 10.1111/j.1365-3083.2005.01618.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Organisms live in continuos interaction with their environment; this interaction is of vital importance but at the same time can be life threatening. The largest and most important interface between the organism and its environment is represented by surfaces covered with epithelial cells. Of these surfaces, mucosae comprise in humans approximately 300 m2, and the skin covers approximately 1.8 m2 surface of the human body. Mucosal tissues contain two effector arms of the immune system, innate and adaptive, which operate in synergy. Interaction with commensal bacteria, which outnumber the nucleated cells of our body, occurs physiologically on epithelial surfaces; this interaction could pose the risk of inflammation. The mucosal immune system has developed a complex network of regulatory signalling cascades that is a prerequisite for proper activation but also for a timely inactivation of the pathway. As demonstrated in gnotobiotic animal models of human diseases, impaired regulation of mucosal responses to commensal bacteria plays an important role in the development of several inflammatory and autoimmune diseases.
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Affiliation(s)
- H Tlaskalova-Hogenova
- Institute of Microbiology, Academy of Sciences of the Czech Republic, Prague, Czech Republic
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Seit-Nebi A, Frolova L, Justesen J, Kisselev L. Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition. Nucleic Acids Res 2001; 29:3982-7. [PMID: 11574680 PMCID: PMC60236 DOI: 10.1093/nar/29.19.3982] [Citation(s) in RCA: 126] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Previously, we have shown that all class-1 polypeptide release factors (RFs) share a common glycine-glycine-glutamine (GGQ) motif, which is critical for RF activity. Here, we subjected to site-directed mutagenesis two invariant amino acids, Gln185 and Arg189, situated in the GGQ minidomain of human eRF1, followed by determination of RF activity and the ribosome binding capacity for mutant eRF1. We show that replacement of Gln185 with polar amino acid residues causes partial inactivation of RF activity; Gln185Ile, Arg189Ala and Arg189Gln mutants are completely inactive; all mutants that retain partial RF activity respond similarly to three stop codons. We suggest that loss of RF activity for Gln185 and Arg189 mutants is caused by distortion of the conformation of the GGQ minidomain but not by damage of the stop codon recognition site of eRF1. Our data are inconsistent with the model postulating direct involvement of Gln185 side chain in orientation of water molecule toward peptidyl-tRNA ester bond at the ribosomal peptidyl transferase centre. Most of the Gln185 mutants exhibit reduced ability to bind to the ribosome, probably, to rRNA and/or (peptidyl)-tRNA(s). The data suggest that the GGQ motif is implicated both in promoting peptidyl-tRNA hydrolysis and binding to the ribosome.
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Affiliation(s)
- A Seit-Nebi
- Engelhardt Institute of Molecular Biology, The Russian Academy of Sciences, 32 Vavilov Street, 119991 Moscow, Russia
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13
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Abstract
In eukaryotes, the polypeptide release factor 1 (eRF1) is involved in translation termination at all three stop codons. However, the mechanism for decoding stop codons remains unknown. A direct interaction of eRF1 with the stop codons has been postulated. Recent studies focus on eRF1 from ciliates in which some stop codons are reassigned to sense codons. Using an in vitro assay based on mammalian ribosomes, we show that eRF1 from the ciliate Euplotes aediculatus responds to UAA and UAG as stop codons and lacks the capacity to decipher the UGA codon, which encodes cysteine in this organism. This result strongly suggests that in ciliates with variant genetic codes eRF1 does not recognize the reassigned codons. Recent hypotheses describing stop codon discrimination by eRF1 are not fully consistent with the set of eRF1 sequences available so far and require direct experimental testing.
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Affiliation(s)
- S Kervestin
- Unité de Biochimie Cellulaire, CNRS FRE 2219, Université Pierre et Marie Curie, 9 quai Saint-Bernard, 75005 Paris, France
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Chavatte L, Frolova L, Kisselev L, Favre A. The polypeptide chain release factor eRF1 specifically contacts the s(4)UGA stop codon located in the A site of eukaryotic ribosomes. ACTA ACUST UNITED AC 2001; 268:2896-904. [PMID: 11358506 DOI: 10.1046/j.1432-1327.2001.02177.x] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
It has been shown previously [Brown, C.M. & Tate, W.P. (1994) J. Biol. Chem. 269, 33164-33170.] that the polypeptide chain release factor RF2 involved in translation termination in prokaryotes was able to photocrossreact with mini-messenger RNAs containing stop signals in which U was replaced by 4-thiouridine (s4U). Here, using the same strategy we have monitored photocrosslinking to eukaryotic ribosomal components of 14-mer mRNA in the presence of tRNA(f)(Met), and 42-mer mRNA in the presence of tRNA(Asp) (tRNA(Asp) gene transcript). We show that: (a) both 14-mer and 42-mer mRNAs crossreact with ribosomal RNA and ribosomal proteins. The patterns of the crosslinked ribosomal proteins are similar with both mRNAs and sensitive to ionic conditions; (b) the crosslinking patterns obtained with 42-mer mRNAs show characteristic modification upon addition of tRNA(Asp) providing evidence for appropriate mRNA phasing onto the ribosome. Similar changes are not detected with the 14-mer mRNA.tRNA(f)(Met) pairs; (c) when eukaryotic polypeptide chain release factor 1 (eRF1) is added to the ribosome.tRNA(Asp) complex it crossreacts with the 42-mer mRNA containing the s(4)UGA stop codon located in the A site, but not with the s(4)UCA sense codon; this crosslink involves the N-terminal and middle domains of eRF1 but not the C domain which interacts with eukaryotic polypeptide chain release factor 3 (eRF3); (d) addition of eRF3 has no effect on the yield of eRF1-42-mer mRNA crosslinking and eRF3 does not crossreact with 42-mer mRNA. These experiments delineate the in vitro conditions allowing optimal phasing of mRNA on the eukaryotic ribosome and demonstrate a direct and specific contact of 'core' eRF1 and s(4)UGA stop codon within the ribosomal A site.
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Affiliation(s)
- L Chavatte
- Institut Jacques Monod, UMR 7592 CNRS-Universités Paris 7-Paris 6, France
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15
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Jakobsen CG, Segaard TM, Jean-Jean O, Frolova L, Justesen J. [Identification of a novel termination release factor eRF3b expressing the eRF3 activity in vitro and in vivo]. Mol Biol (Mosk) 2001; 35:672-81. [PMID: 11524954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
Termination of translation in eukaryotes is governed by the ribosome, a termination codon in the mRNA, and two polypeptide chain release factors (eRF1 and eRF3). We have identified a human protein of 628 amino acids, named eRF3b, which is highly homologous to the known human eRF3 henceforth named eRF3a. At the nucleotide and at the amino acid levels the human eRF3a and eRF3b are about 87% identical. The differences in amino acid sequence are concentrated near the amino terminus. The most important difference in the nucleotide sequence is that eRF3b lacks a GGC repeat close to the initiation codon in eRF3a. We have cloned the cDNA encoding the human eRF3b, purified the eRF3b expressed in Escherichia coli, and found that the protein is active in vitro as a potent stimulator of the release factor activity of human eRFl. Like eRF3a, eRF3b exhibits GTPase activity, which is ribosome- and eRFl-dependent. In vivo assays (based on suppression of readthrough induced by three species of suppressor tRNAs: amber, ochre, and opal) show that the human eRF3b is able to enhance the release factor activity of endogenous and overexpressed eRFl with all three stop codons.
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Affiliation(s)
- C G Jakobsen
- Department of Molecular and Structural Biology, Aarhus University, 8000, Aarhus C, Denmark
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Carnes J, Frolova L, Zinnen S, Drugeon G, Phillippe M, Justesen J, Haenni AL, Leinwand L, Kisselev LL, Yarus M. Suppression of eukaryotic translation termination by selected RNAs. RNA 2000; 6:1468-79. [PMID: 11073222 PMCID: PMC1370017 DOI: 10.1017/s1355838200001242] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Using selection-amplification, we have isolated RNAs with affinity for translation termination factors eRF1 and eRF1.eRF3 complex. Individual RNAs not only bind, but inhibit eRF1-mediated release of a model nascent chain from eukaryotic ribosomes. There is also significant but weaker inhibition of eRF1-stimulated eRF3 GTPase and eRF3 stimulation of eRF1 release activity. These latter selected RNAs therefore hinder eRF1.eRF3 interactions. Finally, four RNA inhibitors of release suppress a UAG stop codon in mammalian extracts dependent for termination on eRF1 from several metazoan species. These RNAs are therefore new specific inhibitors for the analysis of eukaryotic termination, and potentially a new class of omnipotent termination suppressors with possible therapeutic significance.
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Affiliation(s)
- J Carnes
- Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder 80309-0347, USA
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Seit Nebi A, Frolova L, Ivanova N, Poltaraus A, Kiselev L. [Mutation of a glutamine residue in the universal tripeptide GGQ in human eRF1 termination factor does not cause complete loss of its activity]. Mol Biol (Mosk) 2000; 34:899-900. [PMID: 11033819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
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Dontsova M, Frolova L, Vassilieva J, Piendl W, Kisselev L, Garber M. Translation termination factor aRF1 from the archaeon Methanococcus jannaschii is active with eukaryotic ribosomes. FEBS Lett 2000; 472:213-6. [PMID: 10788613 DOI: 10.1016/s0014-5793(00)01466-6] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Abstract
Class-1 translation termination factors (release factors (RFs)) from Eukarya (eRF1) and Archaea (aRF1) exhibit a high degree of amino acid sequence homology and share many common motifs. In contrast to eRF1, function(s) of aRF1 have not yet been studied in vitro. Here, we describe for the first time the cloning and expression in Escherichia coli of the gene encoding the peptide chain RF from the hyperthermophilic archaeon Methanococcus jannaschii (MjaRF1). In an in vitro assay with mammalian ribosomes, MjaRF1, which was overproduced in E. coli, was active as a RF with all three termination codon-containing tetraplets, demonstrating the functional resemblance of aRF1 and eRF1. This observation confirms the earlier prediction that eRF1 and aRF1 form a common structural-functional eRF1/aRF1 protein family, originating from a common ancient ancestor.
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Affiliation(s)
- M Dontsova
- Institute of Protein Research, Russian Academy of Sciences, 142292, Pushchino, Russia
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Drugeon G, Jean-Jean O, Frolova L, Le Goff X, Philippe M, Kisselev L, Haenni AL. Eukaryotic release factor 1 (eRF1) abolishes readthrough and competes with suppressor tRNAs at all three termination codons in messenger RNA. Nucleic Acids Res 1997; 25:2254-8. [PMID: 9171074 PMCID: PMC146740 DOI: 10.1093/nar/25.12.2254] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
It is known from experiments with bacteria and eukaryotic viruses that readthrough of termination codons located within the open reading frame (ORF) of mRNAs depends on the availability of suppressor tRNA(s) and the efficiency of termination in cells. Consequently, the yield of readthrough products can be used as a measure of the activity of polypeptide chain release factor(s) (RF), key components of the translation termination machinery. Readthrough of the UAG codon located at the end of the ORF encoding the coat protein of beet necrotic yellow vein furovirus is required for virus replication. Constructs harbouring this suppressible UAG codon and derivatives containing a UGA or UAA codon in place of the UAG codon have been used in translation experiments in vitro in the absence or presence of human suppressor tRNAs. Readthrough can be virtually abolished by addition of bacterially-expressed eukaryotic RF1 (eRF1). Thus, eRF1 is functional towards all three termination codons located in a natural mRNA and efficiently competes in vitro with endogenous and exogenous suppressor tRNA(s) at the ribosomal A site. These results are consistent with a crucial role of eRF1 in translation termination and forms the essence of an in vitro assay for RF activity based on the abolishment of readthrough by eRF1.
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Affiliation(s)
- G Drugeon
- Institut Jacques Monod, 2 Place Jussieu-Tour 43, 75251 Paris Cedex 05, France
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Batyeva E, Kursheva L, Frolova L, Dunaev V. New Sulfur and Phosphorus Containing Metal Complexes on the Basis of Trithiophosphites. Synthesis and Properties. PHOSPHORUS SULFUR 1997. [DOI: 10.1080/10426509708545555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Elvira Batyeva
- a A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- b A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- c A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- d A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
| | - Lidiya Kursheva
- a A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- b A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- c A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- d A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
| | - Liliya Frolova
- a A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- b A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- c A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- d A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
| | - Victor Dunaev
- a A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- b A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- c A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
- d A.E.Arbuzov Institute of Organic and Physical Chemistry , Russian Academy of Sciences , Arbuzov Str. 8, Kazan 420083, Russia
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Frolova L, Schmutzzer R. On the Reaction of Triphenyltrithiophosphites with Copper (I) and Copper(II) Halides. PHOSPHORUS SULFUR 1996. [DOI: 10.1080/10426509608054674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Frolova L, Le Goff X, Zhouravleva G, Davydova E, Philippe M, Kisselev L. Eukaryotic polypeptide chain release factor eRF3 is an eRF1- and ribosome-dependent guanosine triphosphatase. RNA 1996; 2:334-341. [PMID: 8634914 PMCID: PMC1369376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Termination of translation in eukaryotes is governed by two polypeptide chain release factors, eRF1 and eRF3 on the ribosome. eRF1 promotes stop-codon-dependent hydrolysis of peptidyl-tRNA, and eRF3 interacts with eRF1 and stimulates eRF1 activity in the presence of GTP. Here, we have demonstrated that eRF3 is a GTP-binding protein endowed with a negligible, if any, intrinsic GTPase activity that is profoundly stimulated by the joint action of eRF1 and the ribosome. Separately, neither eRF1 nor the ribosome display this effect. Thus, eRF3 functions as a GTPase in the quaternary complex with ribosome, eRF1, and GTP. From the in vitro uncoupling of the peptidyl-tRNA and GTP hydrolyses achieved in this work, we conclude that in ribosomes both hydrolytic reactions are mediated by the formation of the ternary eRF1-eRF3-GTP complex. eRF1 and the ribosome form a composite GTPase-activating protein (GAP) as described for other G proteins. A dual role for the revealed GTPase complex is proposed: in " GTP state," it controls the positioning of eRF1 toward stop codon and peptidyl-tRNA, whereas in "GDP state," it promotes release of eRFs from the ribosome. The initiation, elongation, and termination steps of protein synthesis seem to be similar with respect to GTPase cycles.
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Affiliation(s)
- L Frolova
- Département de Biologie et Génétique du Développement, CNRS URA 256, Université de Rennes 1, France
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Batyeva E, Kursheva L, Frolova L, Schmutzler R. Reactions of Thiol Derivatives of Acids of Trivalent Phoshorus with Transition Metal Halides. PHOSPHORUS SULFUR 1996. [DOI: 10.1080/10426509608046228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Batyeva E, Lkursheva L, Frolova L, Schmutzler R. Reactions of Thiol Derivatives of Acids of Trivalent Phoshorus with Transition Metal Halides. PHOSPHORUS SULFUR 1996. [DOI: 10.1080/10426509608545120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Zhouravleva G, Frolova L, Le Goff X, Le Guellec R, Inge-Vechtomov S, Kisselev L, Philippe M. Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3. EMBO J 1995; 14:4065-72. [PMID: 7664746 PMCID: PMC394485 DOI: 10.1002/j.1460-2075.1995.tb00078.x] [Citation(s) in RCA: 418] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Termination of translation in higher organisms is a GTP-dependent process. However, in the structure of the single polypeptide chain release factor known so far (eRF1) there are no GTP binding motifs. Moreover, in prokaryotes, a GTP binding protein, RF3, stimulates translation termination. From these observations we proposed that a second eRF should exist, conferring GTP dependence for translation termination. Here, we have shown that the newly sequenced GTP binding Sup35-like protein from Xenopus laevis, termed eRF3, exhibits in vitro three important functional properties: (i) although being inactive as an eRF on its own, it greatly stimulates eRF1 activity in the presence of GTP and low concentrations of stop codons, resembling the properties of prokaryotic RF3; (ii) it binds and probably hydrolyses GTP; and (iii) it binds to eRF1. The structure of the C-domain of the X.laevis eRF3 protein is highly conserved with other Sup35-like proteins, as was also shown earlier for the eRF1 protein family. From these and our previous data, we propose that yeast Sup45 and Sup35 proteins belonging to eRF1 and eRF3 protein families respectively are also yeast termination factors. The absence of structural resemblance of eRF1 and eRF3 to prokaryotic RF1/2 and RF3 respectively, may point to the different evolutionary origin of the translation termination machinery in eukaryotes and prokaryotes. It is proposed that a quaternary complex composed of eRF1, eRF3, GTP and a stop codon of the mRNA is involved in termination of polypeptide synthesis in ribosomes.
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Affiliation(s)
- G Zhouravleva
- Département de Biologie et Génétique du Développement, CNRS URA 256, Université de Rennes, France
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Frolova L, Le Goff X, Rasmussen HH, Cheperegin S, Drugeon G, Kress M, Arman I, Haenni AL, Celis JE, Philippe M. A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor. Nature 1994; 372:701-3. [PMID: 7990965 DOI: 10.1038/372701a0] [Citation(s) in RCA: 291] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The termination of protein synthesis in ribosomes is governed by termination (stop) codons in messenger RNAs and by polypeptide chain release factors (RFs). Although the primary structure of prokaryotic RFs and yeast mitochrondrial RF is established, that of the only known eukaryotic RF (eRF) remains obscure. Here we report the assignment of a family of tightly related proteins (designated eRF1) from lower and higher eukaryotes which are structurally and functionally similar to rabbit eRF. Two of these proteins, one from human and the other from Xenopus laevis, have been expressed in yeast and Escherichia coli, respectively, purified and shown to be active in the in vitro RF assay. The other protein of this family, sup45 (sup1) of Saccharomyces cerevisiae, is involved in omnipotent suppression during translation. The amino-acid sequence of the eRF1 family is highly conserved. We conclude that the eRF1 proteins are directly implicated in the termination of translation in eukaryotes.
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Affiliation(s)
- L Frolova
- Department of Molecular Biology, University of Aarhus, Denmark
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Abstract
Mammalian aminoacyl-tRNA synthetases are indispensible components of the cell's protein-synthesizing machinery. Surprisingly, recent experiments have demonstrated that synthesis of tryptophanyl-tRNA synthetase (WRS) is markedly enhanced after incubation of human cells with interferons. Why is this housekeeping enzyme interferon-inducible? Several hypotheses have been suggested. One hypothesis, that premature termination of protein synthesis was involved, was boosted by the discovery that the deduced amino acid sequence of the mammalian peptide chain release factor (RF) closely resembled that of WRS. Further investigation, however, suggests that the DNA encoding RF was wrongly identified and in fact encodes a rabbit WRS subunit. Other hypotheses on the interferon-inducibility of WRS, including the possibility that the protein performs other, regulatory functions in addition to its core enzymic activity, remain to be explored.
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Graphodatsky A, Frolova L, Biltueva L, Eremina V, Lushnikova T, Sudomoina M, Zinovieva O, Kisselev L. Localization of the tryptophanyl tRNA synthetase gene (WARS) on human and bovine chromosomes by in situ hybridization. Mamm Genome 1993; 4:183-4. [PMID: 8439731 DOI: 10.1007/bf00352236] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- A Graphodatsky
- Laboratory of Animal Cytogenetics, Academy of Sciences, Novosibirsk, Russia
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Frolova L, Arsenyan S, Avdonina T, Gaitskhoki V, Kisselev O, Neifach S, Kisselev L. Enzymatic synthesis of DNA complementary to mitochondrial mRNA via reverse transcription. Nucleic Acids Res 1978; 5:285-95. [PMID: 77007 PMCID: PMC341977 DOI: 10.1093/nar/5.1.285] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
The poly(A)-containing mitochondrial mRNAs of rat liver were tested for their ability to serve as templates for the DNA synthesis by means of reverse transcription in the presence of the oligo(dT) primer and the RNA-directed DNA-polymerase from avian myeloblastosis virus. The mT-mRNA does not support the DNA synthesis in the standard conditions sufficient for effective reverse transcription of rabbit globin mRNA and of poly(A) in the presence of oligo(dT) primers. After a mild alkaline treatment of the mRNA and subsequent polyadenylation of the 3'-termini of the generated fragments with ATP:RNA adenyltransferase from E.coli the poly(A) (+) polyribonucleotides are able to serve as templates for reverse transcription in the presence of oligo(dT) and the reverse transcriptase. A conclusion is made that a "structural stop" exists in mitochondrial mRNA non-translable regions adjacent to the poly(A) terminal sequence. The "structural stop" is suggested to be caused by post-transcriptional modification of mRNA (methylation, etc.) or by a particularly stable secondary structure in this region of the mRNA molecules.
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