The role of zero-field splitting and π-stacking interaction of different nitrogen-donor ligands on the optical properties of luminescent rhenium tricarbonyl complexes

In this work, a systematic evaluation of the role of zero-field splitting (ZFS), and the geometric arrangement of different nitrogen-donor ligands, including π-stacking interactions, in five selected rhenium luminescent complexes was performed.

Rhenium (I) Complexes as Probes for Prokaryotic and Fungal Cells by Fluorescence Microscopy: Do Ligands Matter?

Re(I) complexes have exposed highly suitable properties for cellular imaging (especially for fluorescent microscopy) such as low cytotoxicity, good cellular uptake, and differential staining. These features can be modulated or tuned by modifying the ligands surrounding the metal core. However, most of Re(I)-based complexes have been tested for non-walled cells, such as epithelial cells. In this context, it has been proposed that Re(I) complexes are inefficient to stain walled cells (i.e., cells protected by a rigid cell wall, such as bacteria and fungi), presumably due to this physical barrier hampering cellular uptake. More recently, a series of studies have been published showing that a suitable combination of ligands is useful for obtaining Re(I)-based complexes able to stain walled cells. This review summarizes the main characteristics of different fluorophores used in bioimage, remarking the advantages of d⁶-based complexes, and focusing on Re(I) complexes. In addition, we explored different structural features of these complexes that allow for obtaining fluorophores especially designed for walled cells (bacteria and fungi), with especial emphasis on the ligand choice. Since many pathogens correspond to bacteria and fungi (yeasts and molds), and considering that these organisms have been increasingly used in several biotechnological applications, development of new tools for their study, such as the design of new fluorophores, is fundamental and attractive.

Molecular and Electronic Structure, and Hydrolytic Reactivity of a Samarium(II) Crown Ether Complex

The reaction of SmI₂ with dibenzo-30-crown-10 (DB30C10), followed by metathesis with [Bu₄N][BPh₄], allows for the isolation of [Sm^II(DB30C10)][BPh₄]₂ as bright-red crystals in good yield. Exposure of [Sm(DB30C10)]²⁺ to solvents containing trace water results in the conversion to the dinuclear Sm^III complex, Sm₂(DB30C10)(OH)₂I₄. Structural analysis of both complexes shows substantial rearrangement of the crown ether from a folded, Pac-Man form with Sm^II to a twisted conformation with Sm^III. The optical properties of [Sm^II(DB30C10)][BPh₄]₂ exhibit a strong temperature dependence and change from broad-band absorption features indicative of domination by 5d states to fine features characteristic of 4f → 4f transitions at low temperatures. Examination of the electronic structure of these complexes via ab initio wave function calculations (SO-CASSCF) shows that the ground state of Sm^II in [Sm^II(DB30C10)]²⁺ is a 4f⁶ state with low-lying 4f⁵5d¹ states, where the latter states have been lowered in energy by ∼12 000 cm^-1 with respect to the free ion. The decacoordination of the Sm^II cation by the crown ether is responsible for this alteration in the energies of the excited state and demonstrates the ability to tune the electronic structure of Sm^II.

Catalytic activity of a new Ru(ii) complex for the hydrogen transfer reaction of acetophenone and N-benzylideneaniline: synthesis, characterization and relativistic DFT approaches

The synthesis and characterization of a new ruthenium(ii) complex containing a hemilabile P^N-ligand are reported.

Luminescent europium(iii) and terbium(iii) complexes of β-diketonate and substituted terpyridine ligands: synthesis, crystal structures and elucidation of energy transfer pathways

A series of coordinatively saturated Ln^III complexes: [Ln(R-TPY)(TTA)₃] (1–6) were designed and structurally characterized and plausible energy transfer (ET) pathways determined using a theoretical method.

In-Situ Preparation of CdTe Quantum Dots Capped with a β-Cyclodextrin-Epichlorohydrin Polymer: Polymer Influence on the Nanocrystal's Optical Properties

β-Cyclodextrin (βCD), the less water soluble of the cyclodextrins, has been used as a capping agent in the preparation of semiconductor nanocrystals or quantum dots (QDs). Nevertheless, no reports have been found in the use of the highly water-soluble polymer of this, prepared by the crosslinking of the βCD units with epichlorohydrin in basic medium (βCDP). This polymer, besides to overcome the low solubility of the βCD, increases the inclusion constant of the guest; two parameters that deserve its use as capping agent, instead of the native cyclodextrin. In the present manuscript, we afforded the in-situ aqueous preparation of cadmium telluride (CdTe) QDs capped with βCDP. The polymer influence on the photoluminescent properties of the nanocrystals was analyzed. The βCDP controls the nanocrystals growth during the Oswald ripening stage. Consequently, the CdTe capped βCDP QDs showed lower Stokes-shift values, higher photoluminescent efficiency, and narrower size distribution than for nanocrystals obtained in the absence of polymer. Transmission electron microscopy (TEM) micrographs and energy dispersive X-ray spectroscopy (EDS) analysis revealed the composition and crystallinity of the CdTe QDs. This βCDP capped CdTe QDs is a potential scaffold for the supramolecular modification of QDs surface.

Rare-Earth Metal(II) Aryloxides: Structure, Synthesis, and EPR Spectroscopy of [K(2.2.2-cryptand)][Sc(OC6 H2 tBu2 -2,6-Me-4)3 ]

The suitability of aryloxide ligands for stabilizing +2 oxidation states of Sc and Y has been examined and EPR evidence indicating the first O-donor complexes of Sc^II and Y^II has been obtained, as well as an X-ray crystal structure of a Sc^II aryloxide complex. The trivalent rare-earth metal aryloxide precursors, Ln(OAr')₃ , 1-Ln (Ln=Sc, Y, Gd, Dy, Ho, Er; OAr'=OC₆ H₂ tBu₂ -2,6-Me-4), were synthesized from the corresponding rare-earth metal trichlorides and LiOAr'⋅OEt₂ . Reduction of THF solutions of 1-Ln with potassium graphite in the presence of 2.2.2-cryptand (crypt) yielded dark-colored solutions, 2-Ln, whose EPR spectra at 77 K are characteristic of the Ln^II ions: a two-line spectrum (g_∥ =1.99, g_□ =1.97, A_ave =154 G) for 2-Y and an eight-line spectrum (g_ave =2.01 and A_ave =291 G) for 2-Sc. Solutions of 2-Y decompose within one minute at room temperature, wheras 2-Sc persists up to 40 min at room temperature. 2-Sc was identified by X-ray crystallography as [K(crypt)][Sc(OAr')₃ ], which has a trigonal-planar arrangement of oxygen-donor atoms around Sc^II . Analogous reductions of 1-Ln for Ln=Gd, Dy, Ho, and Er also gave dark solutions of limited stability. Theoretical analysis using time-dependent density functional theory (TD-DFT) along with complete active space self-consistent field (CASSCF) methods, and structural analysis with the Guzei ligand solid angle G-parameter method are presented.

New Properties of a Bioinspired Pyridine Benzimidazole Compound as a Novel Differential Staining Agent for Endoplasmic Reticulum and Golgi Apparatus in Fluorescence Live Cell Imaging

In this study, we explored new properties of the bioinspired pyridine benzimidazole compound B2 (2,4-di-tert-butyl-6-(3H-imidazo[4,5-c]pyridine-2-yl)phenol) regarding its potential use as a differential biomarker. For that, we performed 1D ¹HNMR (TOCSY), UV-Vis absorption spectra in different organic solvents, voltammetry profile (including a scan-rate study), and TD-DFT calculations that including NBO analyses, to provide valuable information about B2 structure and luminescence. In our study, we found that the B2 structure is highly stable, where the presence of an intramolecular hydrogen bond (IHB) seems to have a crucial role in the stability of luminescence, and its emission can be assigned as fluorescence. In fact, we found that the relatively large Stokes Shift observed for B2 (around 175 nm) may be attributed to the stability of the B2 geometry and the strength of its IHB. On the other hand, we determined that B2 is biocompatible by cytotoxicity experiments in HeLa cells, an epithelial cell line. Furthermore, in cellular assays we found that B2 could be internalized by passive diffusion in absence of artificial permeabilization at short incubation times (15 min to 30 min). Fluorescence microscopy studies confirmed that B2 accumulates in the endoplasmic reticulum (ER) and Golgi apparatus, two organelles involved in the secretory pathway. Finally, we determined that B2 exhibited no noticeable blinking or bleaching after 1 h of continuous exposure. Thus, B2 provides a biocompatible, rapid, simple, and efficient way to fluorescently label particular organelles, producing similar results to that obtained with other well-established but more complex methods.

Two New Fluorinated Phenol Derivatives Pyridine Schiff Bases: Synthesis, Spectral, Theoretical Characterization, Inclusion in Epichlorohydrin-β-Cyclodextrin Polymer, and Antifungal Effect

It has been reported that the structure of the Schiff bases is fundamental for their function in biomedical applications. Pyridine Schiff bases are characterized by the presence of a pyridine and a phenolic ring, connected by an azomethine group. In this case, the nitrogen present in the pyridine is responsible for antifungal effects, where the phenolic ring may be also participating in this bioactivity. In this study, we synthesized two new pyridine Schiff Bases: (E)-2-[(3-Amino-pyridin-4-ylimino)-methyl]-4,6-difluoro-phenol (F1) and (E)- 2-[(3-Amino-pyridin-4-ylimino)-methyl]-6-fluoro-phenol (F2), which only differ in the fluorine substitutions in the phenolic ring. We fully characterized both F1 and F2 by FTIR, UV-vis, ¹H; ¹³C; ¹⁹F-NMR, DEPT, HHCOSY, TOCSY, and cyclic voltammetry, as well as by computational studies (DFT), and NBO analysis. In addition, we assessed the antifungal activity of both F1 (two fluorine substitution at positions 4 and 6 in the phenolic ring) and F2 (one fluorine substitution at position 6 in the phenolic ring) against yeasts. We found that only F1 exerted a clear antifungal activity, showing that, for these kind of Schiff bases, the phenolic ring substitutions can modulate biological properties. In addition, we included F1 and F2 into in epichlorohydrin-β-cyclodextrin polymer (βCD), where the Schiff bases remained inside the βCD as determined by the k_i, TGA, DSC, and S_BET. We found that the inclusion in βCD improved the solubility in aqueous media and the antifungal activity of both F1 and F2, revealing antimicrobial effects normally hidden by the presence of common solvents (e.g., DMSO) with some cellular inhibitory activity. The study of structural prerequisites for antimicrobial activity, and the inclusion in polymers to improve solubility, is important for the design of new drugs.

Tuning the molecular antenna effect using donor and acceptor substituents on the optical properties of the [(C5F5)2ThMCp2]2+ and [(C5F5)2ThMCpL2]+ complexes, where M = Fe, Ru and Os and L = CO and C5H5N

In the present work, a theoretical methodology based on DFT is used to establish the effects of the electron rearrangements on the optical properties in a series of Th-Transtion metal complexes.

A theoretical study of the super exchange mechanism and magneto-structural relationships in the [Mn(iii)2(μ-F)F4(Me3tacn)2](PF6) coordination compound

A detailed theoretical study of the electronic structure and magnetic properties of the dinuclear Mn(iii) complex, [Mn(iii)₂(μ-F)F₄(Me₃tacn)₂] (complex 1), with a single fluoride bridge is reported.

Electrochemical behaviors and relativistic DFT calculations to understand the terminal ligand influence on the [Re6(μ3-Q)8X6]4− clusters

A Born–Haber thermodynamic cycle was used to determine the redox potential in a series of rhenium(iii) clusters theoretical analysis at DFT level was considered to estimate the free energy of the reversible process ReIII6/ReIII5Re^IV.

Three new types of transition metal carboranylamidinate complexes

Three new types of transition metal carboranylamidinate complexes are reported.

Study of the structure–bioactivity relationship of three new pyridine Schiff bases: synthesis, spectral characterization, DFT calculations and biological assays

Schiff bases exhibit a broad range of applications, including their use as catalysts, stabilizers, dyes, and intermediates in organic synthesis; and biological activities, such as antifungal properties.

Electronic Structure and Properties of Berkelium Iodates

The reaction of ²⁴⁹Bk(OH)₄ with iodate under hydrothermal conditions results in the formation of Bk(IO₃)₃ as the major product with trace amounts of Bk(IO₃)₄ also crystallizing from the reaction mixture. The structure of Bk(IO₃)₃ consists of nine-coordinate Bk^III cations that are bridged by iodate anions to yield layers that are isomorphous with those found for Am^III, Cf^III, and with lanthanides that possess similar ionic radii. Bk(IO₃)₄ was expected to adopt the same structure as M(IO₃)₄ (M = Ce, Np, Pu), but instead parallels the structural chemistry of the smaller Zr^IV cation. Bk^III-O and Bk^IV-O bond lengths are shorter than anticipated and provide further support for a postcurium break in the actinide series. Photoluminescence and absorption spectra collected from single crystals of Bk(IO₃)₄ show evidence for doping with Bk^III in these crystals. In addition to luminescence from Bk^III in the Bk(IO₃)₄ crystals, a broad-band absorption feature is initially present that is similar to features observed in systems with intervalence charge transfer. However, the high-specific activity of ²⁴⁹Bk (t_1/2 = 320 d) causes oxidation of Bk^III and only Bk^IV is present after a few days with concomitant loss of both the Bk^III luminescence and the broadband feature. The electronic structure of Bk(IO₃)₃ and Bk(IO₃)₄ were examined using a range of computational methods that include density functional theory both on clusters and on periodic structures, relativistic ab initio wave function calculations that incorporate spin-orbit coupling (CASSCF), and by a full-model Hamiltonian with spin-orbit coupling and Slater-Condon parameters (CONDON). Some of these methods provide evidence for an asymmetric ground state present in Bk^IV that does not strictly adhere to Russel-Saunders coupling and Hund's Rule even though it possesses a half-filled 5f ⁷ shell. Multiple factors contribute to the asymmetry that include 5f electrons being present in microstates that are not solely spin up, spin-orbit coupling induced mixing of low-lying excited states with the ground state, and covalency in the Bk^IV-O bonds that distributes the 5f electrons onto the ligands. These factors are absent or diminished in other f⁷ ions such as Gd^III or Cm^III.

Correction: Substituted bidentate and ancillary ligands modulate the bioimaging properties of the classical Re(i) tricarbonyl core with yeasts and bacteria

Correction for ‘Substituted bidentate and ancillary ligands modulate the bioimaging properties of the classical Re(i) tricarbonyl core with yeasts and bacteria’ by Alexander Carreño et al., New J. Chem., 2017, 41, 2140–2147.

Substituted bidentate and ancillary ligands modulate the bioimaging properties of the classical Re(i) tricarbonyl core with yeasts and bacteria

Six classical rhenium(i) tricarbonyl complexes were investigated for their ability to be used as dyes for bioimaging in walled cells.

Insights into bonding interactions and excitation energies of 3d-4f mixed lanthanide transition metal macrocyclic complexes

In this contribution, a computational study of equatorial bound tetranuclear macrocycle (butylene linked) [LnZn(HOM^Bu)]³⁺ (Ln = La³⁺, Ce³⁺) complexes was carried out. Here, the electronic structure, bonding interaction and excitation energies were studied within the relativistic density functional theory framework. From the electronic structure analysis, the frontier molecular orbitals (FMOs) were strongly localized in the d-orbitals of the Zn centers and the f-orbitals of the lanthanide ions. Besides, the inner MOs were found to exhibit a π-character from the organic part of the macrocyclic chain. EDA-NOCV was used as a tool for evaluating the bonding interaction, taking the trinuclear metallomacrocycle (ZnHOM^Bu) and the lanthanide center as fragments. This analysis showed that the interaction between these fragments was slightly covalent; with this covalency being the result of a charge transfer from the metallomacrocyclic ring to the lanthanide. This phenomenon was observed in the deformation density channels obtained from the EDA-NOCV study; in which π- and σ-charge transfer was observed. Finally, the TD-DFT study of the excitation energies evidenced three sets of bands: the first set with the highest intensity represented the ligand to metal charge transfer bands; the second set could be attributed to the 3d-4f electronic transitions between the metal centers; and the third set represented the f-f bands found for the open-shell cerium complex. This class of complexes accomplishes the "antenna effect" principle, which states that highly absorptive transition-metal (TM) complexes can be used to enhance the luminescence of poorly emissive systems, and are introduced in this study as self-sensitizer bimetallic d-f systems with potential applications in near infra-red (NIR) technologies.

Improvement of photovoltaic performance by substituent effect of donor and acceptor structure of TPA-based dye-sensitized solar cells

We report a computational study of a series of organic dyes built with triphenylamine (TPA) as an electron donor group. We designed a set of six dyes called (TPA-n, where n = 0-5). In order to enhance the electron-injection process, the electron-donor effect of some specific substituent was studied. Thus, we gave insights into the rational design of organic TPA-based chromophores for use in dye-sensitized solar cells (DSSCs). In addition, we report the HOMO, LUMO, the calculated excited state oxidized potential E(dye*)(eV) and the free energy change for electron-injection ΔGinject(eV), and the UV-visible absorption bands for TPA-n dyes by a time-dependent density functional theory (TDDFT) procedure at the B3LYP and CAM-B3LYP levels with solvent effect. The results demonstrate that the introduction of the electron-acceptor groups produces an intramolecular charge transfer showing a shift of the absorption wavelengths of TPA-n under studies. Graphical Abstract Several organic dyes TPA-n with different donors and acceptors are modeled. A strong conjugation acrros the donor and anchoring groips (TPA-n) bas been studied. Candidate TPA-3 shows a promising results.

Theoretical exploration of seleno and tellurophenols as promising alternatives to sulfur ligands for anchoring to gold (111) materials

Selenium and tellurium ligands are proposed as improved alternatives to sulfur ligands as a new strategy to anchor functional molecules to gold based materials.

Catalytic aspects of metallophthalocyanines adsorbed on gold-electrode. Theoretical exploration of the binding nature role

We report a computational study of supramolecular complexes of metallophthalocyanines (MPcs, M = Fe, Co, Cu) on gold substrates, and the effect of the substrate on their electrocatalytic properties at the DFT and DFT-D3 levels.

Theoretical and experimental characterization of a novel pyridine benzimidazole: suitability for fluorescence staining in cells and antimicrobial properties

Imidazopyridine showed fluorescence properties suitable for imaging with both prokaryotic and eukaryotic cells.

Fluorescence probes for prokaryotic and eukaryotic cells using Re(CO)3+complexes with an electron withdrawing ancillary ligand

Re(CO)₃⁺complexes with an ancillary ligand present an electron withdrawing effect suitable for cell imaging.

Spectral, theoretical characterization and antifungal properties of two phenol derivative Schiff bases with an intramolecular hydrogen bond

Only one of the two isomers show biological activity but theory and spectroscopic techniques are not able to distinguish between both isomers.

The role of the [CpM(CO)2]− chromophore in the optical properties of the [Cp2ThMCp(CO)2]+ complexes, where M = Fe, Ru and Os. A theoretical view

SO-TDDFT calculations shows that transition metals sensitize the emission of Th ion in the present unsupported complexes.

Exploring the nature of the excitation energies in [Re6(μ3-Q8)X6]4− clusters: a relativistic approach

This contribution is focused on the characterization of the electronic transitions of the [Re₆(μ₃-Q₈)X₆]⁴⁻ clusters, with the aim of understanding the substitution effect of the terminal and chalcogenide ligands, and the significance of the spin–orbit coupling over the description of excitation energies.

Understanding the influence of terminal ligands on the electronic structure and bonding nature in [Re6(μ3-Q8)](2+) clusters

Since the synthesis of the first molecular cluster [Re6(μ3-Q8)X6](4-), the substitutional lability of the terminal ligands prompted new developments in their chemistry, making these molecular clusters a reasonable point of departure for building new materials. The development of novel inorganic materials of technological interest certainly requires an understanding of the electronic structure, bonding, spectroscopy, photophysical and structural properties of these clusters. Taking into account the potential applications in material sciences and the lack of systematization in the study of these kinds of clusters, the proposal of the present work is to perform a detailed theoretical study of the [Re6(μ3-Q8)X6](4-) (Q = S(2-), Se(2-), Te(2-); X = F(-), Cl(-), Br(-), I(-), CN(-), NC(-), SCN(-), NCS(-), OCN(-), NCO(-)) clusters based on the detailed description of the electronic structure of these complexes and the bonding nature between the [Re6(μ3-Q8)](2+) core and several donor-acceptor peripheral ligands. All this work was developed on the framework of the relativistic density functional theory, in which relativistic effects were incorporated by means of a two-component Hamiltonian with the zeroth-order regular approximation. To describe the relative stability of these complexes, we employed the global descriptors of chemical hardness and softness introduced by Pearson. Moreover, an analysis of bonding energetics was performed by combining a fragment approach to the molecular structure with the decomposition of the total bonding energy according to the Morokuma-Ziegler energy partitioning scheme. After an analysis of these results, we found in all cases an extensive ionic character in the bonding between the core and each peripheral ligand. The interaction between the halide ligand and the core gives about 75% ionic character, whereas the other ligands show a more covalent interaction due to effective synergic mechanisms. We conclude that the most stable clusters are those that present the stronger σ-donor terminal ligands, whereas the cluster stability starts to decrease when the π-acceptor effect will be stronger; this fact is directly related to the terminal ligand lability and the strong electrophilic character of the [Re6(μ3-Q8)](2+) core.

Covalent lanthanide(iii) macrocyclic complexes: the bonding nature and optical properties of a promising single antenna molecule

The present work is focused on the elucidation of the electronic structure, bonding and optical properties of a series of coordination compounds of type [Ln^IIIHAM]³⁺, where “Ln^III” are the trivalent lanthanide ions: La³⁺, Ce³⁺, Eu³⁺ and Lu³⁺, while “HAM” is the neutral six-nitrogen macrocyclic ligand [C₂₂N₆H₂₆].