1
|
Pardoux R, Sauge-Merle S, Bremond N, Beccia MR, Lemaire D, Battesti C, Delangle P, Solari PL, Guilbaud P, Berthomieu C. Optimized Coordination of Uranyl in Engineered Calmodulin Site 1 Provides a Subnanomolar Affinity for Uranyl and a Strong Uranyl versus Calcium Selectivity. Inorg Chem 2022; 61:20480-20492. [DOI: 10.1021/acs.inorgchem.2c03185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Romain Pardoux
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Sandrine Sauge-Merle
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Nicolas Bremond
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Maria Rosa Beccia
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - David Lemaire
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Christine Battesti
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Pascale Delangle
- Univ. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000Grenoble, France
| | - Pier Lorenzo Solari
- MARS beamline, Synchrotron SOLEIL, L’Orme des Merisiers, Saint-Aubin, 91192Gif-sur-Yvette Cedex, France
| | | | - Catherine Berthomieu
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| |
Collapse
|
2
|
Pardoux R, Dolla A, Aubert C. Metal-containing PAS/GAF domains in bacterial sensors. Coord Chem Rev 2021. [DOI: 10.1016/j.ccr.2021.214000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/09/2022]
|
3
|
Pardoux R, Fiévet A, Carreira C, Brochier-Armanet C, Valette O, Dermoun Z, Py B, Dolla A, Pauleta SR, Aubert C. The bacterial Mrp ORP is a novel Mrp/NBP35 protein involved in iron-sulfur biogenesis. Sci Rep 2019; 9:712. [PMID: 30679587 PMCID: PMC6345978 DOI: 10.1038/s41598-018-37021-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Accepted: 11/29/2018] [Indexed: 12/20/2022] Open
Abstract
Despite recent advances in understanding the biogenesis of iron-sulfur (Fe-S) proteins, most studies focused on aerobic bacteria as model organisms. Accordingly, multiple players have been proposed to participate in the Fe-S delivery step to apo-target proteins, but critical gaps exist in the knowledge of Fe-S proteins biogenesis in anaerobic organisms. Mrp/NBP35 ATP-binding proteins are a subclass of the soluble P-loop containing nucleoside triphosphate hydrolase superfamily (P-loop NTPase) known to bind and transfer Fe-S clusters in vitro. Here, we report investigations of a novel atypical two-domain Mrp/NBP35 ATP-binding protein named MrpORP associating a P-loop NTPase domain with a dinitrogenase iron-molybdenum cofactor biosynthesis domain (Di-Nase). Characterization of full length MrpORP, as well as of its two domains, showed that both domains bind Fe-S clusters. We provide in vitro evidence that the P-loop NTPase domain of the MrpORP can efficiently transfer its Fe-S cluster to apo-target proteins of the ORange Protein (ORP) complex, suggesting that this novel protein is involved in the maturation of these Fe-S proteins. Last, we showed for the first time, by fluorescence microscopy imaging a polar localization of a Mrp/NBP35 protein.
Collapse
Affiliation(s)
| | | | - Cíntia Carreira
- Microbial Stress Lab. UCIBIO, REQUIMTE, Department Química, Faculdade de Ciências e Tecnologica, Universidade NOVA de Lisboa, Campus da Caparica, Caparica, 2829-516, Portugal
| | - Céline Brochier-Armanet
- Univ Lyon, Université Lyon 1, CNRS, UMR5558, Laboratoire de Biométrie et Biologie Évolutive, 43 bd du 11 novembre 1918, F-69622, Villeurbanne, France
| | | | | | - Béatrice Py
- Aix Marseille Univ, CNRS, LCB, Marseille, France
| | - Alain Dolla
- Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France
| | - Sofia R Pauleta
- Microbial Stress Lab. UCIBIO, REQUIMTE, Department Química, Faculdade de Ciências e Tecnologica, Universidade NOVA de Lisboa, Campus da Caparica, Caparica, 2829-516, Portugal
| | | |
Collapse
|
4
|
Sauge-Merle S, Brulfert F, Pardoux R, Solari PL, Lemaire D, Safi S, Guilbaud P, Simoni E, Merroun ML, Berthomieu C. Structural Analysis of Uranyl Complexation by the EF-Hand Motif of Calmodulin: Effect of Phosphorylation. Chemistry 2017; 23:15505-15517. [DOI: 10.1002/chem.201703484] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Indexed: 01/03/2023]
Affiliation(s)
- Sandrine Sauge-Merle
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Florian Brulfert
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | - Romain Pardoux
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Pier Lorenzo Solari
- MARS beamline; Synchrotron SOLEIL; L'Orme des Merisiers, Saint-Aubin; 91192 Gif-sur-Yvette Cedex France
| | - David Lemaire
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Samir Safi
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | - Philippe Guilbaud
- CEA, Nuclear Energy Division; Research Department on Mining and fuel Recycling Processes (LILA); BP17171 30207 Bagnols-sur-Cèze France
| | - Eric Simoni
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | | | - Catherine Berthomieu
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| |
Collapse
|
5
|
Fievet A, Ducret A, Mignot T, Valette O, Robert L, Pardoux R, Dolla AR, Aubert C. Single-Cell Analysis of Growth and Cell Division of the Anaerobe Desulfovibrio vulgaris Hildenborough. Front Microbiol 2015; 6:1378. [PMID: 26696987 PMCID: PMC4672049 DOI: 10.3389/fmicb.2015.01378] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2015] [Accepted: 11/20/2015] [Indexed: 01/08/2023] Open
Abstract
Recent years have seen significant progress in understanding basic bacterial cell cycle properties such as cell growth and cell division. While characterization and regulation of bacterial cell cycle is quite well-documented in the case of fast growing aerobic model organisms, no data has been so far reported for anaerobic bacteria. This lack of information in anaerobic microorganisms can mainly be explained by the absence of molecular and cellular tools such as single cell microscopy and fluorescent probes usable for anaerobes and essential to study cellular events and/or subcellular localization of the actors involved in cell cycle. In this study, single-cell microscopy has been adapted to study for the first time, in real time, the cell cycle of a bacterial anaerobe, Desulfovibrio vulgaris Hildenborough (DvH). This single-cell analysis provides mechanistic insights into the cell division cycle of DvH, which seems to be governed by the recently discussed so-called incremental model that generates remarkably homogeneous cell sizes. Furthermore, cell division was reversibly blocked during oxygen exposure. This may constitute a strategy for anaerobic cells to cope with transient exposure to oxygen that they may encounter in their natural environment, thereby contributing to their aerotolerance. This study lays the foundation for the first molecular, single-cell assay that will address factors that cannot otherwise be resolved in bulk assays and that will allow visualization of a wide range of molecular mechanisms within living anaerobic cells.
Collapse
Affiliation(s)
- Anouchka Fievet
- Centre National de la Recherche Scientifique, Laboratoire de Chimie Bactérienne UMR 7283, Aix Marseille Université Marseille, France
| | - Adrien Ducret
- Centre National de la Recherche Scientifique, Laboratoire de Chimie Bactérienne UMR 7283, Aix Marseille Université Marseille, France
| | - Tâm Mignot
- Centre National de la Recherche Scientifique, Laboratoire de Chimie Bactérienne UMR 7283, Aix Marseille Université Marseille, France
| | - Odile Valette
- Centre National de la Recherche Scientifique, Laboratoire de Chimie Bactérienne UMR 7283, Aix Marseille Université Marseille, France
| | - Lydia Robert
- INRA, UMR1319 Micalis Jouy-en-Josas, France ; AgroParisTech, UMR Micalis Jouy-en-Josas, France
| | - Romain Pardoux
- Centre National de la Recherche Scientifique, Laboratoire de Chimie Bactérienne UMR 7283, Aix Marseille Université Marseille, France
| | - Alain R Dolla
- Centre National de la Recherche Scientifique, Laboratoire de Chimie Bactérienne UMR 7283, Aix Marseille Université Marseille, France
| | - Corinne Aubert
- Centre National de la Recherche Scientifique, Laboratoire de Chimie Bactérienne UMR 7283, Aix Marseille Université Marseille, France
| |
Collapse
|
6
|
Pardoux R, Sauge-Merle S, Lemaire D, Delangle P, Guilloreau L, Adriano JM, Berthomieu C. Modulating uranium binding affinity in engineered calmodulin EF-hand peptides: effect of phosphorylation. PLoS One 2012; 7:e41922. [PMID: 22870263 PMCID: PMC3411679 DOI: 10.1371/journal.pone.0041922] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2012] [Accepted: 06/29/2012] [Indexed: 12/21/2022] Open
Abstract
To improve our understanding of uranium toxicity, the determinants of uranyl affinity in proteins must be better characterized. In this work, we analyzed the contribution of a phosphoryl group on uranium binding affinity in a protein binding site, using the site 1 EF-hand motif of calmodulin. The recombinant domain 1 of calmodulin from A. thaliana was engineered to impair metal binding at site 2 and was used as a structured template. Threonine at position 9 of the loop was phosphorylated in vitro, using the recombinant catalytic subunit of protein kinase CK2. Hence, the T9TKE12 sequence was substituted by the CK2 recognition sequence TAAE. A tyrosine was introduced at position 7, so that uranyl and calcium binding affinities could be determined by following tyrosine fluorescence. Phosphorylation was characterized by ESI-MS spectrometry, and the phosphorylated peptide was purified to homogeneity using ion-exchange chromatography. The binding constants for uranyl were determined by competition experiments with iminodiacetate. At pH 6, phosphorylation increased the affinity for uranyl by a factor of ∼5, from Kd = 25±6 nM to Kd = 5±1 nM. The phosphorylated peptide exhibited a much larger affinity at pH 7, with a dissociation constant in the subnanomolar range (Kd = 0.25±0.06 nM). FTIR analyses showed that the phosphothreonine side chain is partly protonated at pH 6, while it is fully deprotonated at pH 7. Moreover, formation of the uranyl-peptide complex at pH 7 resulted in significant frequency shifts of the νas(P-O) and νs(P-O) IR modes of phosphothreonine, supporting its direct interaction with uranyl. Accordingly, a bathochromic shift in νas(UO2)2+ vibration (from 923 cm−1 to 908 cm−1) was observed upon uranyl coordination to the phosphorylated peptide. Together, our data demonstrate that the phosphoryl group plays a determining role in uranyl binding affinity to proteins at physiological pH.
Collapse
Affiliation(s)
- Romain Pardoux
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
| | - Sandrine Sauge-Merle
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
| | - David Lemaire
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
| | - Pascale Delangle
- CEA, INAC, Service de Chimie Inorganique et Biologique (UMR_E 3 CEA UJF), Grenoble, France
| | - Luc Guilloreau
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
| | - Jean-Marc Adriano
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
- CEA, DSV IBEB, Laboratoire de Bioénergétique et Biotechnologie des Bactéries et Microalgues, Saint Paul-lez-Durance, France
| | - Catherine Berthomieu
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
- * E-mail:
| |
Collapse
|