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Snow SM, Matkowskyj KA, Maresh M, Clipson L, Vo TN, Johnson KA, Deming DA, Newton MA, Grady WM, Pickhardt PJ, Halberg RB. Validation of genetic classifiers derived from mouse and human tumors to identify molecular subtypes of colorectal cancer. Hum Pathol 2022; 119:1-14. [PMID: 34655611 PMCID: PMC9936405 DOI: 10.1016/j.humpath.2021.10.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 10/01/2021] [Accepted: 10/06/2021] [Indexed: 01/28/2023]
Abstract
Colorectal cancer (CRC) is a leading cause of cancer death in the United States. Standard treatment for advanced-stage CRC for decades has included 5-fluorouracil-based chemotherapy. More recently, targeted therapies for metastatic CRC are being used based on the individual cancer's molecular profile. In the past few years, several different molecular subtype schemes for human CRC have been developed. The molecular subtypes can be distinguished by gene expression signatures and have the potential to be used to guide treatment decisions. However, many subtyping classification methods were developed using mRNA expression levels of hundreds to thousands of genes, making them impractical for clinical use. In this study, we assessed whether an immunohistochemical approach could be used for molecular subtyping of CRCs. We validated two previously published, independent sets of immunohistochemistry classifiers and modified the published methods to improve the accuracy of the scoring methods. In addition, we evaluated whether protein and genetic signatures identified originally in the mouse were linked to clinical outcomes of patients with CRC. We found that low DDAH1 or low GAL3ST2 protein levels in human CRCs correlate with poor patient outcomes. The results of this study have the potential to impact methods for determining the prognosis and therapy selection for patients with CRC.
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Affiliation(s)
- Santina M. Snow
- Department of Oncology, University of Wisconsin, Madison, Wisconsin, USA, 53705
| | - Kristina A. Matkowskyj
- Carbone Cancer Center, University of Wisconsin, Madison, Wisconsin, USA, 53705,Department of Pathology and Laboratory Medicine, University of Wisconsin, Madison, Wisconsin, USA, 53705,William S. Middleton VA Medical Center, Madison, Wisconsin, USA, 53705
| | - Morgan Maresh
- Department of Oncology, University of Wisconsin, Madison, Wisconsin, USA, 53705
| | - Linda Clipson
- Department of Oncology, University of Wisconsin, Madison, Wisconsin, USA, 53705
| | - Tien N. Vo
- Department of Statistics, University of Wisconsin, Madison, Wisconsin, USA, 53706,Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin, USA, 53792,Present address: StataCorp LLC, College Station, Texas 77845
| | | | - Dustin A. Deming
- Department of Oncology, University of Wisconsin, Madison, Wisconsin, USA, 53705,Carbone Cancer Center, University of Wisconsin, Madison, Wisconsin, USA, 53705,Division of Hematology, Medical Oncology, and Palliative Care, Department of Medicine, University of Wisconsin, Madison, Wisconsin, USA, 53705
| | - Michael A. Newton
- Department of Statistics, University of Wisconsin, Madison, Wisconsin, USA, 53706,Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin, USA, 53792
| | - William M. Grady
- Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA 98109,Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA 98109,Department of Internal Medicine, University of Washington School of Medicine, Seattle, WA, USA
| | - Perry J. Pickhardt
- Department of Radiology, University of Wisconsin, Madison, Wisconsin, USA, 53705
| | - Richard B. Halberg
- Department of Oncology, University of Wisconsin, Madison, Wisconsin, USA, 53705,Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, Wisconsin, USA, 53705, Corresponding author Richard B. Halberg, Ph.D., Departments of Medicine and Oncology, University of Wisconsin, Madison, Wisconsin, USA Phone: 608-263-8433
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Udho EB, Huebner SM, Albrecht DM, Matkowskyj KA, Clipson L, Hedican CA, Koth R, Snow SM, Eberhardt EL, Miller D, Van Doorn R, Gjyzeli G, Spengler EK, Storts DR, Thamm DH, Edmondson EF, Weil MM, Halberg RB, Bacher JW. Tumor aggressiveness is independent of radiation quality in murine hepatocellular carcinoma and mammary tumor models. Int J Radiat Biol 2021; 97:1140-1151. [PMID: 33720813 DOI: 10.1080/09553002.2021.1900946] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
PURPOSE Estimating cancer risk associated with interplanetary space travel is complicated. Human exposure data to high atomic number, high-energy (HZE) radiation is lacking, so data from low linear energy transfer (low-LET) γ-ray radiation is used in risk models, with the assumption that HZE and γ-ray radiation have comparable biological effects. This assumption has been challenged by reports indicating that HZE radiation might produce more aggressive tumors. The goal of this research is to test whether high-LET HZE radiation induced tumors are more aggressive. MATERIALS AND METHODS Murine models of mammary and liver cancer were used to compare the impact of exposure to 0.2Gy of 300MeV/n silicon ions, 3 Gy of γ-rays or no radiation. Numerous measures of tumor aggressiveness were assessed. RESULTS For the mammary cancer models, there was no significant change in the tumor latency or metastasis in silicon-irradiated mice compared to controls. For the liver cancer models, we observed an increase in tumor incidence but not tumor aggressiveness in irradiated mice. CONCLUSION Tumors in the HZE-irradiated mice were not more aggressive than those arising from exposure to low-LET γ-rays or spontaneously. Thus, enhanced aggressiveness does not appear to be a uniform characteristic of all tumors in HZE-irradiated animals.
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Affiliation(s)
| | - Shane M Huebner
- Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA
| | - Dawn M Albrecht
- Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA
| | - Kristina A Matkowskyj
- Carbone Cancer Center, University of Wisconsin, Madison, WI, USA.,Department of Pathology & Laboratory Medicine, University of Wisconsin, Madison, WI, USA.,William S. Middleton VA Medical Center, Madison, WI, USA
| | - Linda Clipson
- Department of Oncology, University of Wisconsin, Madison, WI, USA
| | | | | | - Santina M Snow
- Department of Oncology, University of Wisconsin, Madison, WI, USA
| | - Emily L Eberhardt
- Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA
| | - Devon Miller
- Promega Corporation, Madison, WI, USA.,Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA
| | - Rachel Van Doorn
- Promega Corporation, Madison, WI, USA.,Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA
| | - Genti Gjyzeli
- Promega Corporation, Madison, WI, USA.,Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA
| | - Erin K Spengler
- Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA
| | | | - Douglas H Thamm
- Department of Clinical Sciences, Colorado State University, Fort Collins, CO, USA
| | - Elijah F Edmondson
- Molecular Histopathology Lab, Frederick National Laboratory for Cancer Research, Frederick, MD, USA
| | - Michael M Weil
- Department of Environmental and Radiological Health Sciences, Colorado State University, Fort Collins, CO, USA
| | - Richard B Halberg
- Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA.,Carbone Cancer Center, University of Wisconsin, Madison, WI, USA.,Department of Oncology, University of Wisconsin, Madison, WI, USA
| | - Jeffery W Bacher
- Promega Corporation, Madison, WI, USA.,Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, WI, USA
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