Genomic properties of allamanda leaf mottle distortion virus, a new begomovirus from golden trumpet (Allamanda cathartica) in India

Golden trumpet (Allamanda cathartica) plants were observed to exhibit mottling and distortion symptoms on leaves. The genome of an associated begomovirus (Al-K1) was amplified by rolling-circle amplification, cloned, and sequenced. The viral genome consisted of two circular ssDNA molecules, and the organization of the ORFs was similar to those of DNA-A and DNA-B components of bipartite begomoviruses. The size of DNA-A (KC202818) and DNA-B (MG969497) of the begomovirus was 2772 and 2690 nucleotides, respectively. Sequence analysis revealed that the DNA-A and DNA-B components shared the highest sequence identity with duranta leaf curl virus (MN537564, 87.8%) and cotton leaf curl Alabad virus (MH760452, 81.0%), respectively. Interestingly, the Al-K1 isolate shared significantly less nucleotide sequence identity with allamanda leaf curl virus (EF602306, 71.6%), the only monopartite begomovirus reported previously in golden trumpet from China. Al-K1 shared less than 91% sequence identity with other begomoviruses, and hence, according to the latest ICTV guidelines for species demarcation of begomoviruses, Al-K1 is proposed to be a member of a new species, and we propose the name "allamanda leaf mottle distortion virus" (AllLMoDV-[IN-Al_K1-12]) for this virus. AllLMoDV was detected in various golden trumpet samples from different locations by PCR with specific primers based on the genome sequence determined in this study. Our study provides evidence of the occurrence of a new bipartite begomovirus in a perennial ornamental plant in India.

Sorption of PFOS in 114 Well-Characterized Tropical and Temperate Soils: Application of Multivariate and Artificial Neural Network Analyses

The influence of soil properties on PFOS sorption are not fully understood, particularly for variable charge soils. PFOS batch sorption isotherms were conducted for 114 temperate and tropical soils from Australia and Fiji, that were well-characterized for their soil properties, including total organic carbon (TOC), anion exchange capacity, and surface charge. In most soils, PFOS sorption isotherms were nonlinear. PFOS sorption distribution coefficients (K_d) ranged from 5 to 229 mL/g (median: 28 mL/g), with 63% of the Fijian soils and 35% of the Australian soils showing K_d values that exceeded the observed median K_d. Multiple linear regression showed that TOC, amorphous aluminum and iron oxides contents, anion exchange capacity, pH, and silt content, jointly explained about 53% of the variance in PFOS K_d in soils. Variable charge soils with net positive surface charges, and moderate to elevated TOC content, generally displayed enhanced PFOS sorption than in temperate or tropical soils with TOC as the only sorbent phase, especially at acidic pH ranges. For the first time, two artificial neural networks were developed to predict the measured PFOS K_d (R² = 0.80) in the soils. Overall, both TOC and surface charge characteristics of soils are important for describing PFOS sorption.

Waste to watt: Anaerobic digestion of wastewater irrigated biomass for energy and fertiliser production

This study aimed to investigate the potential of energy crops for biomethane production by examining the influence of abattoir and municipal wastewater irrigation on biomass production and the Biochemical Methane Potential (BMP). The experiments covered seven energy crops including sugar beet, alfalfa, maize, giant reed, napier grass, sunflower and canola. The biomass was harvested at three months of planting and BMP of each energy crops was assessed using anaerobic digestion. Giant reed yielded the highest biomass (22.3 t ha^-1) from A800 treatment compared to the other species. The best performance for BMP (793.56 Nml CH₄ g VS^-1) was recorded for maize biomass irrigated with abattoir wastewater which is equivalent to gross energy yield 1041 GJ ha^-1 yr^-1 or electricity yield 284.8 MW h ha^-1 yr^-1. The digestate samples collected after anaerobic digestion of biomass from plants were analysed for their nutrient value. Nutrient content of digestates varied between energy crops, waste water sources and irrigation levels. The highest nitrate content was measured for giant reed (A800) and phosphate and sulphate contents for sugar beet leaf (A800). The results indicated that wastewater sources can be used to grow energy crops, thereby producing biomethane for energy and digestate for plant nutrition through anaerobic digestion process.

Comparative values of various wastewater streams as a soil nutrient source

In order to assess whether wastewaters from different industries (winery, abattoir, dairy and municipal) could be used safely to irrigate agricultural crops, a pot experiment in glass house was conducted in a sandy clay loam soil (pH = 6.12) from South Australia. Different concentrations (0, 0.05, 5, 25, 50, 75 and 100%) of the wastewaters diluted in an ordinary tap water were applied to soils sown with sunflower and maize seeds, and the effect of these irrigation treatments were evaluated at the early crop growth stages by recording the biomass yields, plant mineral nutrient contents, and also the soil chemical properties. Results showed that the winery effluent reduced the early growth of maize and sunflower when applied without any dilution, but increased yields of both plants when applied at 25% dilution with tap water. At this dilution of the winery wastewater, 80% more dry shoot yield (DSY) of sunflower and 58% more DSY of maize were obtained in comparison to the application of 100% concentration of the wastewater. Abattoir wastewater showed the highest yields at 100% concentration. Furthermore, municipal effluent did not show any inhibitory effect on both the crops. It was observed that metal contents in both the crops were different due to the application of different wastewaters, but did not exceed any toxic level. This study demonstrated that abattoir wastewater as such, and winery and dairy wastewaters at appropriate dilutions could be used for irrigation in agricultural fields to enhance crop productivity.

A recombinant Tobacco curly shoot virus causes leaf curl disease in tomato in a north-eastern state of India and has potentiality to trans-replicate a non-cognate betasatellite

Leaf curl disease is a serious constraint in tomato production throughout India. Several begomoviruses were reported from different parts of the country; however, identity of begomovirus associated with leaf curl disease in tomato in north-eastern states of India was obscured. In the present study, the complete genome of an isolate (To-Ag-1) of begomovirus was generated from a leaf curl sample collected from Tripura state. However, no DNA-B and betasatellite were detected in the field samples. The genome of To-Ag-1 isolate contained 2,755 nucleotides that shared 94.7 % sequence identity with Tobacco curly shoot virus (TbCSV) and 71.3-90.1 % sequence identity with the other tomato-infecting begomoviruses occurring in the Indian subcontinent. Several inter-specific recombination events among different tomato-infecting begomoviruses from India and intra-specific recombination among different isolates of TbCSV reported from China were observed in the genome of To-Ag-1 isolate. Agroinoculation of the virus alone produced leaf curl symptoms in tomato and Nicotiana benthamiana. However, co-inoculation with a non-cognate betasatellite, Croton yellow vein mosaic betasatellite (CroYVMB) with the TbCSV resulted in increased severity of the symptoms both in tomato and N. benthamiana. Systemic distribution of the TbCSV and CroYVMB was detected in the newly developed leaves of tobacco and tomato, which showed ability of TbCSV to trans-replicate CroYVMB. The present study for the first time provides evidence of occurrence of TbCSV in tomato in north-eastern region of India and showed increased virulence of TbCSV with a non-cognate betasatellite.