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Validation of a Wearable Medical Device for Automatic Diagnosis of OSA against Standard PSG. J Clin Med 2024; 13:571. [PMID: 38276077 PMCID: PMC10816319 DOI: 10.3390/jcm13020571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 01/16/2024] [Accepted: 01/17/2024] [Indexed: 01/27/2024] Open
Abstract
STUDY OBJECTIVE The objective of this study was to assess the accuracy of automatic diagnosis of obstructive sleep apnea (OSA) with a new, small, acoustic-based, wearable technology (AcuPebble SA100), by comparing it with standard type 1 polysomnography (PSG) diagnosis. MATERIAL AND METHODS This observational, prospective study was carried out in a Spanish hospital sleep apnea center. Consecutive subjects who had been referred to the hospital following primary care suspicion of OSA were recruited and underwent in-laboratory attended PSG, together with the AcuPebble SA100 device simultaneously overnight from January to December 2022. RESULTS A total of 80 patients were recruited for the trial. The patients had a median Epworth scoring of 10, a mean of 10.4, and a range of 0-24. The mean AHI obtained with PSG plus sleep clinician marking was 23.2, median 14.3 and range 0-108. The study demonstrated a diagnostic accuracy (based on AHI) of 95.24%, sensitivity of 92.86%, specificity of 97.14%, positive predictive value of 96.30%, negative predictive value of 94.44%, positive likelihood ratio of 32.50 and negative likelihood ratio of 0.07. CONCLUSIONS The AcuPebble SA100 (EU) device has demonstrated an accurate automated diagnosis of OSA in patients undergoing in-clinic sleep testing when compared against the gold-standard reference of in-clinic PSG.
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Automatic Identification of Snoring and Groaning Segments in Acoustic Recordings. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022; 2022:1993-1996. [PMID: 36086260 DOI: 10.1109/embc48229.2022.9871863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Sleep-related breathing disorders have severe impact on the quality of lives of those suffering from them. These disorders present with a variety of symptoms, out of which snoring and groaning are very common. This paper presents an algorithm to identify and classify segments of acoustic respiratory sound recordings that contain both groaning and snoring events. The recordings were obtained from a database containing 20 subjects from which features based on the Mel-frequency cepstral coefficients (MFCC) were extracted. In the first stage of the algorithm, segments of recordings consisting of either snoring or groaning episodes - without classifying them - were identified. In the second stage, these segments were further differentiated into individual groaning or snoring events. The algorithm in the first stage achieved a sensitivity and specificity of 90.5% ±2.9% and 90.0% ±1.6% respectively, using a RUSBoost model. In the second stage, a random forest classifier was used, and the accuracies for groan and snore events were 78.1% ±4.7% and 78.4% ±4.7% respectively.
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Assessing the Feasibility of Acoustic Based Seizure Detection. IEEE Trans Biomed Eng 2022; 69:2379-2389. [PMID: 35061585 DOI: 10.1109/tbme.2022.3144634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
OBJECTIVE Long-term monitoring of epilepsy patients outside of hospital settings is impractical due to the complexity and costs associated with electroencephalogram (EEG) systems. Alternative sensing modalities that can acquire, and automatically interpret signals through easy-to-use wearable devices, are needed to help with at-home management of the disease. In this paper, a novel machine learning algorithm is presented for detecting epileptic seizures using acoustic physiological signals acquired from the neck using a wearable device. METHODS Acoustic signals from an existing database, were processed, to extract their Mel-frequency Cepstral Coefficients (MFCCs) which were used to train RUSBoost classifiers to identify ictal and non-ictal acoustic segments. A postprocessing stage was then applied to the segment classification results to identify seizures episodes. RESULTS Tested on 667 hours of acoustic data acquired from 15 patients with at least one seizure, the algorithm achieved a detection sensitivity of 88.1% (95% CI: 79%-97%) from a total of 36 seizures, out of which 24 had no motor manifestations, with a FPR of 0.83/h, and a median detection latency of -42 s. CONCLUSION The results demonstrated for the first time the ability to identify seizures using acoustic internal body signals acquired on the neck. SIGNIFICANCE The results of this paper validate the feasibility of using internal physiological sounds for seizure detection, which could potentially be of use for the development of novel, wearable, very simple to use, long term monitoring, or seizure detection systems; circumventing the practical limitations of EEG monitoring outside hospital settings, or systems based on sensing modalities that work on convulsive seizures only.
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Accuracy and usability of AcuPebble SA100 for automated diagnosis of obstructive sleep apnoea in the home environment setting: an evaluation study. BMJ Open 2021; 11:e046803. [PMID: 34933855 PMCID: PMC8693096 DOI: 10.1136/bmjopen-2020-046803] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
OBJECTIVES Obstructive sleep apnoea (OSA) is a heavily underdiagnosed condition, which can lead to significant multimorbidity. Underdiagnosis is often secondary to limitations in existing diagnostic methods. We conducted a diagnostic accuracy and usability study, to evaluate the efficacy of a novel, low-cost, small, wearable medical device, AcuPebble_SA100, for automated diagnosis of OSA in the home environment. SETTINGS Patients were recruited to a standard OSA diagnostic pathway in an UK hospital. They were trained on the use of type-III-cardiorespiratory polygraphy, which they took to use at home. They were also given AcuPebble_SA100; but they were not trained on how to use it. PARTICIPANTS 182 consecutive patients had been referred for OSA diagnosis in which 150 successfully completed the study. PRIMARY OUTCOME MEASURES Efficacy of AcuPebble_SA100 for automated diagnosis of moderate-severe-OSA against cardiorespiratory polygraphy (sensitivity/specificity/likelihood ratios/predictive values) and validation of usability by patients themselves in their home environment. RESULTS After returning the systems, two expert clinicians, blinded to AcuPebble_SA100's output, manually scored the cardiorespiratory polygraphy signals to reach a diagnosis. AcuPebble_SA100 generated automated diagnosis corresponding to four, typically followed, diagnostic criteria: Apnoea Hypopnoea Index (AHI) using 3% as criteria for oxygen desaturation; Oxygen Desaturation Index (ODI) for 3% and 4% desaturation criteria and AHI using 4% as desaturation criteria. In all cases, AcuPebble_SA100 matched the experts' diagnosis with positive and negative likelihood ratios over 10 and below 0.1, respectively. Comparing against the current American Academy of Sleep Medicine's AHI-based criteria demonstrated 95.33% accuracy (95% CI (90·62% to 98·10%)), 96.84% specificity (95% CI (91·05% to 99·34%)), 92.73% sensitivity (95% CI (82·41% to 97·98%)), 94.4% positive-predictive value (95% CI (84·78% to 98·11%)) and 95.83% negative-predictive value (95% CI (89·94% to 98·34%)). All patients used AcuPebble_SA100 correctly. Over 97% reported a strong preference for AcuPebble_SA100 over cardiorespiratory polygraphy. CONCLUSIONS These results validate the efficacy of AcuPebble_SA100 as an automated diagnosis alternative to cardiorespiratory polygraphy; also demonstrating that AcuPebble_SA100 can be used by patients without requiring human training/assistance. This opens the doors for more efficient patient pathways for OSA diagnosis. TRIAL REGISTRATION NUMBER NCT03544086; ClinicalTrials.gov.
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Towards Automatic Identification of Epileptic Recordings in Long-term EEG Monitoring. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:273-276. [PMID: 34891289 DOI: 10.1109/embc46164.2021.9630782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Electroencephalogram (EEG) is a crucial tool in the diagnosis and management of epilepsy. The process of analyzing EEG is time consuming leading to the development of seizure detection algorithms to aid its analysis. This approach is limited since it requires seizures to occur during monitoring periods and can often lead to misdiagnosis in cases where seizure occurrence is rare. For such cases, it has been shown that the interictal periods in EEG signals, which is the predominant state in long-term monitoring, can be useful for the diagnosis of epilepsy. This paper presents an algorithm, using the information in interictal periods, to discriminate between long-term EEG recordings of epilepsy patients and healthy subjects. It extracts several time and frequency-time domain features from the signals and classifies them using an ensemble classifier, achieving 100% sensitivity and 98.7% specificity in classifying 267 recordings from 105 subjects. The results demonstrate the feasibility of this approach to reliably identify EEG recordings of epilepsy subjects automatically which can be highly useful to facilitate screening and diagnosis of epilepsy, especially in those parts of the world where there is a lack of trained personnel for interpreting EEG signals.
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A Systematic Review of Sensing Technologies for Wearable Sleep Staging. SENSORS (BASEL, SWITZERLAND) 2021; 21:1562. [PMID: 33668118 PMCID: PMC7956647 DOI: 10.3390/s21051562] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 02/13/2021] [Accepted: 02/20/2021] [Indexed: 12/15/2022]
Abstract
Designing wearable systems for sleep detection and staging is extremely challenging due to the numerous constraints associated with sensing, usability, accuracy, and regulatory requirements. Several researchers have explored the use of signals from a subset of sensors that are used in polysomnography (PSG), whereas others have demonstrated the feasibility of using alternative sensing modalities. In this paper, a systematic review of the different sensing modalities that have been used for wearable sleep staging is presented. Based on a review of 90 papers, 13 different sensing modalities are identified. Each sensing modality is explored to identify signals that can be obtained from it, the sleep stages that can be reliably identified, the classification accuracy of systems and methods using the sensing modality, as well as the usability constraints of the sensor in a wearable system. It concludes that the two most common sensing modalities in use are those based on electroencephalography (EEG) and photoplethysmography (PPG). EEG-based systems are the most accurate, with EEG being the only sensing modality capable of identifying all the stages of sleep. PPG-based systems are much simpler to use and better suited for wearable monitoring but are unable to identify all the sleep stages.
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Automatic Cough Detection in Acoustic Signal using Spectral Features. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:7153-7156. [PMID: 31947484 DOI: 10.1109/embc.2019.8857792] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Cough is a common symptom that manifests in numerous respiratory diseases. In chronic respiratory diseases, such as asthma and COPD, monitoring of cough is an integral part in managing the disease. This paper presents an algorithm for automatic detection of cough events from acoustic signals. The algorithm uses only three spectral features with a logistic regression model to separate sound segments into cough and non-cough events. The spectral features were derived using simple calculation from two frequency bands of the sound spectrum. The frequency bands of interest were chosen based on its characteristics in the spectrum. The algorithm achieved high sensitivity of 90.31%, specificity of 98.14%, and F1-score of 88.70%. Its low-complexity and high detection performance demonstrate its potential for use in remote patient monitoring systems for real-time, automatic cough detection.
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Evaluation of Mel-Frequency Cepstrum for Wheeze Analysis. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:4686-4689. [PMID: 31946908 DOI: 10.1109/embc.2019.8857848] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Monitoring of wheezes is an integral part of managing Chronic Respiratory Diseases such as asthma and Chronic Obstructive Pulmonary Disease (COPD). Recently, there is a growing interest in automatic detection of wheezes and the use of Mel-Frequency Cepstral Coefficients (MFCC) have been shown to achieve encouraging detection performance. While the successful use of MFCC for identifying wheezes has been demonstrated, it is not clear which MFCC coefficients are actually useful for detecting wheezes. The objective of this paper is to characterize and study the effectiveness of individual coefficients in discriminating between wheezes and normal respiratory sounds. The coefficients have been evaluated in terms of histogram dissimilarity and linear separability. Further, a comparison between the use of single coefficient against other combinations of coefficients is also presented. The results demonstrate MFCC-2 coefficient to be significantly more effective than all the other coefficients in discriminating between wheezes and normal respiratory sounds sampled at 8000 Hz.
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Automatic Identification of Cough Events from Acoustic Signals. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:217-220. [PMID: 31945881 DOI: 10.1109/embc.2019.8856420] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Cough is a common symptom of numerous respiratory diseases. In certain cases, such as asthma and COPD, early identification of coughs is useful for the management of these diseases. This paper presents an algorithm for automatic identification of cough events from acoustic signals. The algorithm is based on only four features of the acoustic signals including LPC coefficient, tonality index, spectral flatness and spectral centroid with a logistic regression model to label sound segments into cough and non-cough events. The algorithm achieves sensitivity of of 86.78%, specificity of 99.42%, and F1-score of 88.74%. Its high performance despite its small size of feature-space demonstrate its potential for use in remote patient monitoring systems for automatic cough detection using acoustic signals.
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A Novel Method for Automatic Identification of Respiratory Disease from Acoustic Recordings. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:2589-2592. [PMID: 31946426 DOI: 10.1109/embc.2019.8857154] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
This paper evaluates the use of breath sound recordings to automatically determine the respiratory health status of a subject. A number of features were investigated and Wilcoxon Rank Sum statistical test was used to determine the significance of the extracted features. The significant features were then passed to a feature selection algorithm based on mutual information, to determine the combination of features that provided minimal redundancy and maximum relevance. The algorithm was tested on a publicly accessible respiratory sounds database. With the testing dataset, the trained classifier achieved accuracy of 87.1%, sensitivity of 86.8% and specificity of 93.6%. These are promising results showing the possibility of determining the presence or absence of respiratory disease using breath sounds recordings.
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Acoustic Sensing as a Novel Wearable Approach for Cardiac Monitoring at the Wrist. Sci Rep 2019; 9:20079. [PMID: 31882585 PMCID: PMC6934570 DOI: 10.1038/s41598-019-55599-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Accepted: 11/29/2019] [Indexed: 11/18/2022] Open
Abstract
This paper introduces the concept of using acoustic sensing over the radial artery to extract cardiac parameters for continuous vital sign monitoring. It proposes a novel measurement principle that allows detection of the heart sounds together with the pulse wave, an attribute not possible with existing photoplethysmography (PPG)-based methods for monitoring at the wrist. The validity of the proposed principle is demonstrated using a new miniature, battery-operated wearable device to sense the acoustic signals and a novel algorithm to extract the heart rate from these signals. The algorithm utilizes the power spectral analysis of the acoustic pulse signal to detect the S1 sounds and additionally, the K-means method to remove motion artifacts for an accurate heartbeat detection. It has been validated on a dataset consisting of 12 subjects with a data length of 6 hours. The results demonstrate an accuracy of 98.78%, mean absolute error of 0.28 bpm, limits of agreement between −1.68 and 1.69 bpm, and a correlation coefficient of 0.998 with reference to a state-of-the-art PPG-based commercial device. The results in this proof of concept study demonstrate the potential of this new sensing modality to be used as an alternative, or to complement existing methods, for continuous monitoring of heart rate at the wrist.
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An Algorithm for Heart Rate Extraction From Acoustic Recordings at the Neck. IEEE Trans Biomed Eng 2019; 66:246-256. [DOI: 10.1109/tbme.2018.2836187] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Characterization Study of Neck Photoplethysmography. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2018; 2018:4355-4358. [PMID: 30441318 DOI: 10.1109/embc.2018.8513247] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
This paper presents a comparison between finger and neck photoplethysmography (PPG) in order to assess the potential and limitations of this, non-conventionally used, body site for application in pulse oximetry. PPG signals were recorded at both sites from healthy subjects to inspect the differences in average waveforms, as well as in oxygen saturation (SpO2) and heart rate (HR) estimation. The results show significant differences in the average PPG pulse waveforms for different contour features such as diastolic or dicrotic notch amplitude, among others. The results show that the HR estimated from signals obtained with the neck sensor are strongly correlated to the output of the reference finger (R=0.862, MAE=1.27 BPM), whereas SpO2 measurements are not that accurately predicted (R=0.129, MAE=11.7%). Spectrograms under different breathing conditions revealed that the respiratory frequency is more predominant in neck PPG than in finger, which has a great potential for respiratory rate (RR) extraction. These are very promising results for the suitability of the neck as an alternative location for monitoring of respiratory diseases, and specifically for sleep apnea.
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Pulse oximetry in the neck - a proof of concept. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2018; 2017:877-880. [PMID: 29060012 DOI: 10.1109/embc.2017.8036964] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Oxygen saturation levels are routinely monitored in clinical settings. Pulse oximetry, in transmittance operation mode, is the most common method of estimating oxygen saturation (SpO2). This is inexpensive and non-invasive and thus allows for long-term monitoring. However, it suffers from issues such as signal integrity, reliability and patient comfortability. As a result, there is an interest in exploring other locations on the body where oxygen saturation can be measured reliably. In this paper, a wearable device has been designed to study the feasibility of extracting photoplethysmogram (PPG) signals at the neck in reflectance pulse oximetry mode. It explores the signal integrity and strength compared to other locations as well as the presence of motion artefacts in that location. The results demonstrate that the PPG signals acquired at the neck show a very strong correlation (r=0.82) with the SpO2 values obtained using a commercial device. Further, the SpO2 values are calculated with an accuracy of 98.6%.
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Monitoring smoking behaviour using a wearable acoustic sensor. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2017; 2017:4459-4462. [PMID: 29060887 DOI: 10.1109/embc.2017.8037846] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Smoking is a cause of multiple health problems resulting in diseases which can also be fatal. It is well known that smoking has long-term impact on the health of an individual as well. While a number of studies have looked at the impact of smoking on health and its economic impacts, most of these rely on input from smokers in the form of questionnaires and surveys. Long-term monitoring of smoking habits and behaviour is thus not possible because of the lack of means to do so. This paper proposes the use of a wearable device to monitor breathing signals of subjects. It is shown that the acoustic properties of a smoking breath are different from a non-smoking breath. To encapsulate these differences, several features from a breath segment are extracted and used with a simple classifier to automatically identify smoking breaths. The proposed algorithm detected smoking and non-smoking breaths with average accuracy of 66% and 99% respectively.
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Automatic sleep staging using state machine-controlled decision trees. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2017; 2015:378-81. [PMID: 26736278 DOI: 10.1109/embc.2015.7318378] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Automatic sleep staging from a reduced number of channels is desirable to save time, reduce costs and make sleep monitoring more accessible by providing home-based polysomnography. This paper introduces a novel algorithm for automatic scoring of sleep stages using a combination of small decision trees driven by a state machine. The algorithm uses two channels of EEG for feature extraction and has a state machine that selects a suitable decision tree for classification based on the prevailing sleep stage. Its performance has been evaluated using the complete dataset of 61 recordings from PhysioNet Sleep EDF Expanded database achieving an overall accuracy of 82% and 79% on training and test sets respectively. The algorithm has been developed with a very small number of decision tree nodes that are active at any given time making it suitable for use in resource-constrained wearable systems.
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ECG artefact identification and removal in mHealth systems for continuous patient monitoring. Healthc Technol Lett 2016; 3:171-176. [PMID: 27733923 DOI: 10.1049/htl.2016.0020] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2016] [Revised: 08/09/2016] [Accepted: 08/16/2016] [Indexed: 11/19/2022] Open
Abstract
Continuous patient monitoring systems acquire enormous amounts of data that is either manually analysed by doctors or automatically processed using intelligent algorithms. Sections of data acquired over long period of time can be corrupted with artefacts due to patient movement, sensor placement and interference from other sources. Owing to the large volume of data these artefacts need to be automatically identified so that the analysis systems and doctors are aware of them while making medical diagnosis. Three important factors are explored that must be considered and quantified for the design and evaluation of automatic artefact identification algorithms: signal quality, interpretation quality and computational complexity. The first two are useful to determine the effectiveness of an algorithm, whereas the third is particularly vital in mHealth systems where computational resources are heavily constrained. A series of artefact identification and filtering algorithms are then presented focusing on the electrocardiography data. These algorithms are quantified using the three metrics to demonstrate how different algorithms can be evaluated and compared to select the best ones for a given wireless sensor network.
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Abstract
Pertussis is a contagious respiratory disease which mainly affects young children and can be fatal if left untreated. The World Health Organization estimates 16 million pertussis cases annually worldwide resulting in over 200,000 deaths. It is prevalent mainly in developing countries where it is difficult to diagnose due to the lack of healthcare facilities and medical professionals. Hence, a low-cost, quick and easily accessible solution is needed to provide pertussis diagnosis in such areas to contain an outbreak. In this paper we present an algorithm for automated diagnosis of pertussis using audio signals by analyzing cough and whoop sounds. The algorithm consists of three main blocks to perform automatic cough detection, cough classification and whooping sound detection. Each of these extract relevant features from the audio signal and subsequently classify them using a logistic regression model. The output from these blocks is collated to provide a pertussis likelihood diagnosis. The performance of the proposed algorithm is evaluated using audio recordings from 38 patients. The algorithm is able to diagnose all pertussis successfully from all audio recordings without any false diagnosis. It can also automatically detect individual cough sounds with 92% accuracy and PPV of 97%. The low complexity of the proposed algorithm coupled with its high accuracy demonstrates that it can be readily deployed using smartphones and can be extremely useful for quick identification or early screening of pertussis and for infection outbreaks control.
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An open-source toolbox for standardized use of PhysioNet Sleep EDF Expanded Database. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016; 2015:6014-7. [PMID: 26737662 DOI: 10.1109/embc.2015.7319762] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
PhysioNet Sleep EDF database has been the most popular source of data used for developing and testing many automatic sleep staging algorithms. However, the recordings from this database has been used in an inconsistent fashion. For example, arbitrary selection of start and end times from long term recordings, data-hypnogram mismatches, different performance metrics and hypnogram conversion from R&K to AASM. All these differences result in different data sections and performance metrics being used by researchers thereby making any direct comparison between algorithms very difficult. Recently, a superset of this database has been made available on PhysioNet, known as the Sleep EDF Expanded Database which includes 61 recordings. This provides an opportunity to standardize the way in which signals from this database should be used. With this goal in mind, we present in this paper a toolbox for automatically downloading and extracting recordings from the Sleep EDF Expanded database and converting them to a suitable format for use in MATLAB. This toolbox contains functions for selecting appropriate data for sleep analysis (based on our previous recommendations for sleep staging), hypnogram conversion and computation of performance metrics. Its use makes it simpler to start using the new sleep database and also provides a foundation for much-needed standardization in this research field.
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An algorithm for automatic detection of drowsiness for use in wearable EEG systems. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016; 2016:3523-3526. [PMID: 28269058 DOI: 10.1109/embc.2016.7591488] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Lack of proper restorative sleep can induce sleepiness at odd hours making a person drowsy. This onset of drowsiness can be detrimental for the individual in a number of ways if it happens at an unwanted time. For example, drowsiness while driving a vehicle or operating heavy machinery poses a threat to the safety and wellbeing of individuals as well as those around them. Timely detection of drowsiness can prevent the occurrence of unfortunate accidents thereby improving road and work environment safety. In this paper, by analyzing the electroencephalographic (EEG) signals of human subjects in the frequency domain, several features across different EEG channels are explored. Of these, three features are identified to have a strong correlation with drowsiness. A weighted sum of these defining features, extracted from a single EEG channel, is then used with a simple classifier to automatically separate the state of wakefulness from drowsiness. The proposed algorithm resulted in drowsiness detection sensitivity of 85% and specificity of 93%.
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Recommendations for performance assessment of automatic sleep staging algorithms. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016; 2014:5044-7. [PMID: 25571126 DOI: 10.1109/embc.2014.6944758] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
A number of automatic sleep scoring algorithms have been published in the last few years. These can potentially help save time and reduce costs in sleep monitoring. However, the use of both R&K and AASM classification, different databases and varying performance metrics makes it extremely difficult to compare these algorithms. In this paper, we describe some readily available polysomnography databases and propose a set of recommendations and performance metrics to promote uniform testing and direct comparison of different algorithms. We use two different polysomnography databases with a simple sleep staging algorithm to demonstrate the usage of all recommendations and presentation of performance results. We also illustrate how seemingly similar results using two different databases can have contrasting accuracies in different sleep stages. Finally, we show how selection of different training and test subjects from the same database can alter the final performance results.
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Algorithm for heart rate extraction in a novel wearable acoustic sensor. Healthc Technol Lett 2015; 2:28-33. [PMID: 26609401 PMCID: PMC4613720 DOI: 10.1049/htl.2014.0095] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Revised: 01/19/2015] [Accepted: 01/20/2015] [Indexed: 11/19/2022] Open
Abstract
Phonocardiography is a widely used method of listening to the heart sounds and indicating the presence of cardiac abnormalities. Each heart cycle consists of two major sounds – S1 and S2 – that can be used to determine the heart rate. The conventional method of acoustic signal acquisition involves placing the sound sensor at the chest where this sound is most audible. Presented is a novel algorithm for the detection of S1 and S2 heart sounds and the use of them to extract the heart rate from signals acquired by a small sensor placed at the neck. This algorithm achieves an accuracy of 90.73 and 90.69%, with respect to heart rate value provided by two commercial devices, evaluated on more than 38 h of data acquired from ten different subjects during sleep in a pilot clinical study. This is the largest dataset for acoustic heart sound classification and heart rate extraction in the literature to date. The algorithm in this study used signals from a sensor designed to monitor breathing. This shows that the same sensor and signal can be used to monitor both breathing and heart rate, making it highly useful for long-term wearable vital signs monitoring.
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A low computational cost algorithm for REM sleep detection using single channel EEG. Ann Biomed Eng 2014; 42:2344-59. [PMID: 25113231 PMCID: PMC4204008 DOI: 10.1007/s10439-014-1085-6] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2014] [Accepted: 07/31/2014] [Indexed: 11/26/2022]
Abstract
The push towards low-power and wearable sleep systems requires using minimum number of recording channels to enhance battery life, keep processing load small and be more comfortable for the user. Since most sleep stages can be identified using EEG traces, enormous power savings could be achieved by using a single channel of EEG. However, detection of REM sleep from one channel EEG is challenging due to its electroencephalographic similarities with N1 and Wake stages. In this paper we investigate a novel feature in sleep EEG that demonstrates high discriminatory ability for detecting REM phases. We then use this feature, that is based on spectral edge frequency (SEF) in the 8–16 Hz frequency band, together with the absolute power and the relative power of the signal, to develop a simple REM detection algorithm. We evaluate the performance of this proposed algorithm with overnight single channel EEG recordings of 5 training and 15 independent test subjects. Our algorithm achieved sensitivity of 83%, specificity of 89% and selectivity of 61% on a test database consisting of 2221 REM epochs. It also achieved sensitivity and selectivity of 81 and 75% on PhysioNet Sleep-EDF database consisting of 8 subjects. These results demonstrate that SEF can be a useful feature for automatic detection of REM stages of sleep from a single channel EEG.
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Performance-power consumption tradeoff in wearable epilepsy monitoring systems. IEEE J Biomed Health Inform 2014; 19:1019-1028. [PMID: 25069131 DOI: 10.1109/jbhi.2014.2342501] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Automated seizure detection methods can be used to reduce time and costs associated with analyzing large volumes of ambulatory EEG recordings. These methods however have to rely on very complex, power hungry algorithms, implemented on the system backend, in order to achieve acceptable levels of accuracy. In size, and therefore power-constrained EEG systems, an alternative approach to the problem of data reduction is online data selection, in which simpler algorithms select potential epileptiform activity for discontinuous recording but accurate analysis is still left to a medical practitioner. Such a diagnostic decision support system would still provide doctors with information relevant for diagnosis while reducing the time taken to analyze the EEG. For wearable systems with limited power budgets, data selection algorithm must be of sufficiently low complexity in order to reduce the amount of data transmitted and the overall power consumption. In this paper, we present a low-power hardware implementation of an online epileptic seizure data selection algorithm with encryption and data transmission and demonstrate the tradeoffs between its accuracy and the overall system power consumption. We demonstrate that overall power savings by data selection can be achieved by transmitting less than 40% of the data. We also show a 29% power reduction when selecting and transmitting 94% of all seizure events and only 10% of background EEG.
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Abstract
Wearable sensor nodes monitoring the human body must operate autonomously for very long periods of time. Online and low-power data compression embedded within the sensor node is therefore essential to minimize data storage/transmission overheads. This paper presents a low-power MSP430 compressive sensing implementation for providing such compression, focusing particularly on the impact of the sensor node architecture on the compression performance. Compression power performance is compared for four different sensor nodes incorporating different strategies for wireless transmission/on-sensor-node local storage of data. The results demonstrate that the compressive sensing used must be designed differently depending on the underlying node topology, and that the compression strategy should not be guided only by signal processing considerations. We also provide a practical overview of state-of-the-art sensor node topologies. Wireless transmission of data is often preferred as it offers increased flexibility during use, but in general at the cost of increased power consumption. We demonstrate that wireless sensor nodes can highly benefit from the use of compressive sensing and now can achieve power consumptions comparable to, or better than, the use of local memory.
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Evaluating the use of line length for automatic sleep spindle detection. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2014; 2014:5024-5027. [PMID: 25571121 DOI: 10.1109/embc.2014.6944753] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Sleep spindles are transient waveforms observed on the electroencephalogram (EEG) during the N2 stage of sleep. In this paper we evaluate the use of line length, an efficient and low-complexity time domain feature, for automatic detection of sleep spindles. We use this feature with a simple algorithm to detect spindles achieving sensitivity of 83.6% and specificity of 87.9%. We also present a comparison of these results with other spindle detection methods evaluated on the same dataset. Further, we implemented the algorithm on a MSP430 microcontroller achieving a power consumption of 56.7 μW. The overall detection performance, combined with the low power consumption show that line length could be a useful feature for detecting sleep spindles in wearable and resource-constrained systems.
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Discriminating between best performing features for seizure detection and data selection. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2013; 2013:1692-1695. [PMID: 24110031 DOI: 10.1109/embc.2013.6609844] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Seizure detection algorithms have been developed to solve specific problems, such as seizure onset detection, occurrence detection, termination detection and data selection. It is thus inherent that each type of seizure detection algorithm would detect a different EEG characteristic (feature). However most feature comparison studies do not specify the seizure detection problem for which their respective features have been evaluated. This paper shows that the best features/algorithm bases are not the same for all types of algorithms but depend on the type of seizure detection algorithm wanted. To demonstrate this, 65 features previously evaluated for online seizure data selection are re-evaluated here for seizure occurrence detection, using performance metrics pertinent to each seizure detection type whilst keeping the testing methodology the same. The results show that the best performing features/algorithm bases for data selection and occurrence detection algorithms are different and that it is more challenging to achieve high detection accuracy for the former seizure detection type. This paper also provides a comprehensive evaluation of the performance of 65 features for seizure occurrence detection to aid future researchers in choosing the best performing feature(s) to improve seizure detection accuracy.
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