Development and validation of the EUROFORGEN NAME (North African and Middle Eastern) ancestry panel

Inference of biogeographic origin is an important factor in clinical, population and forensic genetics. The information provided by AIMs (Ancestry Informative Markers) can allow the differentiation of major continental population groups, and several AIM panels have been developed for this purpose. However, from these major population groups, Eurasia covers a wide area between two continents that is difficult to differentiate genetically. These populations display a gradual genetic cline from West Europe to South Asia in terms of allele frequency distribution. Although differences have been reported between Europe and South Asia, Middle East populations continue to be a target of further investigations due to the lack of genetic variability, therefore hampering their genetic differentiation from neighboring populations. In the present study, a custom-built ancestry panel was developed to analyze North African and Middle Eastern populations, designated the 'NAME' panel. The NAME panel contains 111 SNPs that have patterns of allele frequency differentiation that can distinguish individuals originating in North Africa and the Middle East when combined with a previous set of 126 Global AIM-SNPs.

A novel anaerobic filter membrane bioreactor: prototype start-up and filtration assays

Anaerobic digestion allows efficient treatment of high loaded wastewater, and membrane technology allows obtaining high quality effluents with complete biomass retention. However, high biomass concentration interferes with membrane fouling. In the present work, a new bioreactor that integrates an attached biomass anaerobic culture on a fixed bed and a submerged membrane has been started up. The recirculation between the digestion and filtration chambers is coupled to the gas-lift effect of the bubbling employed for the scouring of the membranes, avoiding the use or electromechanical pumps that damage the suspended biomass. The support material retains the biomass in the digestion tank despite the downwards flow, avoiding the submerged membrane contacting with a high concentrated suspension. This novel system, called an anaerobic filter membrane bioreactor was immediately started up, achieving chemical oxygen demand (COD) removal efficiencies of 96% at an organic loading rate (OLR) of 7 kg COD/m³·d. In order to select filtration flux, specific gas demand and filtration cycle duration, the results of 15 short term assays, eight hours for each one, is presented for fluxes between 15.7 and 17.7 L/m²·h, cycle duration between 10 and 30 minutes, and three levels of scouring. It was checked that reversible and irreversible fouling were directly related when dTMP/dt > 2.5 mbar/min.

Machine perfusion: initial results in an expanded criteria donor kidney transplant program

BACKGROUND

Delayed graft function (DGF) negatively impacts graft survival. Expanded criteria donors (ECD) show a higher rate of DGF. Hypothermic machine perfusion (HMP) has shown a DGF decrease and an increase of survival at 1 year. Several authors found that renal resistance (RR) at the end of machine perfusion was an independent risk factor for the development of DGF and poorer graft survival. The objective of this study was to analyze HMP results in the context of an ECD program and assess the impact of donor parameters and resistance index (RI) during perfusion in graft survival after kidney transplantation.

METHODS

Donor age, terminal creatinine, machine perfusion time, percentage of glomerulosclerosis, and RI at the end of the perfusion were considered as risk predictors. Univariate and multivariate Cox regression analysis was constructed to find independent risk factors of DGF. Finally, diagnostic validity for RR was determined by sensitivity, specificity, and positive and negative predictive values.

RESULTS

Twenty-three percent of patients developed DGF. We found no difference in the ability of flow or RI to predict the development of DGF. The predictive accuracy of RI for DGF by receiver operator characteristic curve was poor, with a c-statistic of 0.66 (95% CI, 0.50-0.81; P = .046). Our analysis did not identify risk factors that predicted graft survival at 1 year. Patient and graft survival were 98.8% and 89.7%, respectively.

CONCLUSIONS

HMP has reduced the rate of DGF in our cohort of recipients of ECD grafts compared with historical data (23.3% vs 38.0%). Analysis did not identify risk pretransplant factors for graft survival at 1 year.

Performance of an AnMBR pilot plant treating high-strength lipid wastewater: biological and filtration processes

The performance of an anaerobic membrane bioreactor (AnMBR) treating wastewater with high levels of oil and grease content from a snacks factory is studied and its effectiveness is demonstrated. The relation between the reversible and the irreversible fouling rate and the fouling propensity of the fatty matter were evaluated under a subcritical flux of 7.9 and 8.3 L/m(2) h. Low Oil and Grease (O&G) concentrations of 500 mg/L produced an irreversible fouling rate of only 0.09 mbar/d, while the fouling rate was between 0.96 and 3.95 mbar/d for an average O&G concentration of 6 g/L. In spite of the significant increase in filtration resistance from 0.31 to 6.08 × 10(12) m(-1) after 40 days of continuous operation, the critical flux level hardly decreased from 11.1 to 9.7 L/(m(2) h). With regard to the biological process, after a start-up period with an organic loading rate (OLR) of below 2 kg COD/(m(3) d), the system was able to treat wastewater between 4.6 and 36 g O&G/L and the system remained stable for OLR at around 17 kg COD/(m(3) d) for 2.8 d, without inhibitory signals. Acclimated sludge quickly reached maximum methane production and digested substrate with high oil and grease content, observing an increase in palmitic acid the first days and constant levels of propionic acid while fatty acids were in the medium.

Treating wastewater with high oil and grease content using an Anaerobic Membrane Bioreactor (AnMBR). Filtration and cleaning assays

An Anaerobic Membrane Bioreactor (AnMBR) pilot plant was studied to improve certain operational conditions of AnMBRs that treat high oil and grease wastewaters discharged from a snacks factory. A comparison of its performance and behavior was made with an upflow anaerobic reactor throughout the first eight weeks of its operation. Raw snack food wastewater was characterized by oil and grease concentrations of up to 6,000 mg/l, with chemical oxygen demand (COD) and biological oxygen demand (BOD(5)) concentrations of up to 22,000 and 10,300 mg/l, respectively. The AnMBR achieved COD removal efficiencies of 97% at an organic loading rate (OLR) of 5.1 kg COD/m(3) d. The filtration flux, and the suction, backwash and relaxation times for each cycle were all varied: an 11 min filtration time involving 10 s pre-relaxation, 20 s backwash and 70 s post-relaxation was finally selected. The filtration flux for long-term operation was between 6.5 and 8.0 l/m(2) h. The study also tested physical cleaning strategies such as intensive backwashing cycles and extended relaxation mode, and different chemical cleaning methods, such as chemically enhanced backwash on air and chemical cleaning by immersion.

Integrated anaerobic-aerobic fixed-film reactor for slaughterhouse wastewater treatment

An integrated anaerobic-aerobic fixed-film pilot-scale reactor with arranged media was fed during 166 days with slaughterhouse wastewater. Operation temperature was 25 degrees C and the anaerobic-aerobic volume ratio was decreased from 4:1 to 3:2 and finally to 2:3. Overall organic matter removal efficiencies of 93% were achieved for an average organic loading rate of 0.77 kg COD/m3 d, and nitrogen removal efficiencies of 67% were achieved for nitrogen loading rates of 0.084 kg N/m3 d. The high internal recirculation associated to the air-lift effect linked to the aeration of a part of the reactor section caused high mixing between the anaerobic and aerobic zones, so that most organic matter was removed aerobically. The nitrification process achieved an efficiency of 91% for nitrogen loads of 0.15 kg N/m3 d when the anaerobic-aerobic volume ratio was 2:3 and was limited by dissolved oxygen concentration below 3 mg/l. The influence of the heterotrophic biomass growing in the outer biofilm was checked. Denitrification only implied the 12-34% of the total nitrogen removal and was limited by dissolved oxygen concentration in the anaerobic zone above 0.5 mg/l caused by the mixing regime. Most removed nitrogen was employed in synthesis of heterotrophic bacteria.

Nitrogen and organic matter removal from slaughterhouse wastewater in a lab-scale aerobic fixed-film bioreactor

This paper presents the behaviour of a laboratory scale Aerobic Fixed-Film Bioreactor (Ae-FFB) with arranged media including its initial start up phase. It examines the viability of the Ae-FFB to remove nitrogen and organic matter from poultry slaughterhouse wastewater. After 12 days of operation while rapid growth of nitrifying bacteria took place, nitrogen and organic loading rates were increased progressively by up to 0.2 kg TKN m(-3) day(-1) and 0.8 kg COD m(-3) day(-1) respectively, reaching nitrogen and organic matter removal efficiencies of up to 92%. Heterotrophic bacteria, mainly placed in the suspended biomass accumulated at the bottom of the reactor, were found to be competing with nitrifying bacteria for oxygen, which limited nitrification efficiency. Despite operating with dissolved oxygen concentrations of around 3.5 mg 1(-1), an important contribution of the denitrification process was observed that removed up to 50% of oxidised nitrogen, depending on the availability of biodegradable organic matter.

Organic matter removal in combined anaerobic-aerobic fixed-film bioreactors

A combination of two fixed-film bioreactors (FFB) with arranged media, the first anaerobic and the second aerobic, connected in series with recirculation was fed continuously for 133 days with wastewater from a poultry slaughterhouse. Oxidation of the organic carbon compounds and nitrification were carried out in the aerobic FFB and methanogenesis and denitrification were performed in the anaerobic FFB. The average organic loading rate was 0.39 kg COD/m3d and 92% removal efficiencies of organic matter were achieved. COD-removal occurred mainly in the anaerobic FFB, increasing when the recirculation ratio rose from 1 to 6 due to the increase in the anoxic denitrification. The influence of the C/N ratio of the raw wastewater over the proportion in which the COD-removal was carried out by oxidation in the aerobic FFB, methanogenesis or denitrification in the anaerobic FFB was studied. When the volume of the aerobic FFB became smaller than that of the anaerobic one the fraction of organic matter removed in the anaerobic FFB increased, but also the ratio between the respective volumetric rates (rCODan/rCODae) increased. High recirculation and low C/NO-N ratio in the anaerobic FFB feed favoured the denitrification to the detriment of the methanogenic process. Regarding nitrogen removal for nitrogen applied loads around 0.064 kg TKN/m3d the removal efficiency was of 95%, which decreased to 84% for 0.14 kg TKN/m3d. The stability of the nitrification process was the controlling factor of the nitrogen removal. High ammonia concentration caused by high recirculation ratio, specially when the aerobic FFB volume was smaller, caused nitrification inhibition which destabilised the system.

Start-up of a pilot-scale anaerobic fixed film reactor at low temperature treating slaughterhouse wastewater

A pilot-scale anaerobic fixed film reactor (AFFR) with vertically arranged PVC tubes as biomass carrier, treating poultry slaughterhouse wastewater was started-up in 74 days at temperatures between 20-24 degrees C. The start-up process consisted of a long acclimatization phase followed by a low loaded growth phase, a gradual increase of OLR upto 9.2 kg COD/m3d, and a final maturation phase at moderated loads of 2.7 kg COD/m3d at which total COD removal efficiencies of 57% were achieved. Alkalinity ratio IA:PA was found to be the best control parameter to avoid VFA accumulation. OLR increase based on pH control was not satisfactory because changes in CO2 solubility caused daily by temperature and flow variations led to pH oscillations of 0.2 units. The low wastewater alkalinity, 260 mg/l CaCO3 was insufficient to buffer the pH system, therefore the pH decrease associated with the VFA accumulation was not easily detected and could not be used as a way of OLR control. Organic matter removal took place by accumulation and biodegradation processes. Limitation in the reactor hydrodynamics and particulate fraction hydrolysis was detected at high flow rates.

Bovine skeletal muscle adenosine deaminase: kinetic and thermodynamic studies

Adenosine deaminase from bovine skeletal muscle catalyzes the hydrolytic deamination of adenosine to inosine and ammonia via an ordered Uni-Bi mechanism, if water is not considered as a true second substrate, as deduced from the inhibition pattern products. The inhibition constants (Ki) obtained for inosine and ammonia were 316 mumol/l and 2 mol/l, respectively. The activation energy of the reaction has been calculated as 10 kcal/mol, delta H* and delta F* as 7.9 and 15.6 kcal/mol, respectively, and delta S* as -23 cal/mol/degrees K.

Bovine skeletal muscle adenosine deaminase. Purification and some properties

A low molecular weight form of adenosine deaminase from bovine skeletal muscle was purified about 930-fold. The enzyme had a mol. wt of 31,000, a Km value for adenosine of 2.37 X 10(-5) M and a pH optimum at 7.0. This enzyme is very resistant to heat inactivation and does not require metal activators or other dialysable cofactors. A possible role in the post-mortem metabolism of adenine nucleotide in skeletal muscle is discussed.

Influence of pH and Lactic Acid on Occurrence of Non-specific Zones of Growth Inhibition During Determination of Antibiotic Residues in Chicken Muscle

Occurrence of non-specific inhibition zones with concentrated chicken muscle extracts depends on the pH of the extract being assayed. Buffering of the extraction residues with a phosphate buffer of pH 7.0 greatly reduced but did not completely prevent appearance of non-specific inhibition zones. Haloes appearing with buffered muscle extracts were more frequent and intense as post mortem time increased. Inhibition was not dependent on pH per senor on lactic acid content, at least within the physiological range; neither was it influenced in this range by the combined pH-lactic acid content. The residue of the extraction solvents (oxalate-EDTA-acetone) was not responsible for this inhibition at physiological pH values. From the results obtained, it seems reasonable to associate the non-specific inhibition zones with substances produced in the muscle post-mortem.

Relationship between pulmonary hemodynamics and arterial pH and carbon dioxide tension in critically ill patients

To ascertain the clinical significance of derangements in arterial pH and arterial carbon dioxide tension (PaCO2) in modifying pulmonary arterial pressures and pulmonary vascular resistance in critically ill patients, the relationship between these two sets of variables was evaluated in 75 patients. No significant differences in pulmonary hemodynamic values were found among patients with acidemia, a normal pH, or alkalemia, even at extreme pH values; and there was no consistent relationship between PaCO2 and each of the pulmonary hemodynamic measurements. In patients who initially had a normal pH but subsequently developed acidemia or alkalemia, there was also no significant correlation between changes in pH and pulmonary hemodynamic values. We conclude that abnormalities of pulmonary hemodynamic values in seriously ill patients are usually due to factors other than acid-base derangements. Of practical importance is the observation that the predictability of the pulmonary arterial wedge pressure from the pulmonary arterial diastolic pressure is not invalidated by acid-base disturbances.