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Benjamin R, Jain N, Maus MV, Boissel N, Graham C, Jozwik A, Yallop D, Konopleva M, Frigault MJ, Teshima T, Kato K, Boucaud F, Balandraud S, Gianella-Borradori A, Binlich F, Marchiq I, Dupouy S, Almena-Carrasco M, Pannaux M, Fouliard S, Brissot E, Mohty M, Benjamin R, Graham C, Jozwik A, Yallop D, Bonganay L, Catt L, Chappell J, Cheung G, Chu V, Cuthill K, Devereux S, Dunlop A, Ellard R, Farzeneh F, Folarin N, Giemza E, Kassam S, Kazmi M, Kuhnl A, Lewis J, Liskova M, Mason A, Metaxa V, Mufti G, Munro H, Pagliuca A, Patten P, Potter V, Rice C, Saleem A, Sanderson R, Stewart O, Jabbour E, Jain N, Jones E, Kantarjian H, Kebriaei P, Konopleva M, McGee K, Wierda W, Brown J, Casey K, Frigault M, Hock H, Mathews R, Maus M, McKeown MA, Spitzer T, Toncheva V, Azoulay E, Boissel N, Caillat-Zucman S, Celli-Lebras K, Clappier E, Itzykson R, Larghero J, Lengliné E, Madelaine I, Meunier M, Rabian F, Raffoux E, Tremorin MT, Bonnin A, Brissot E, Daguenel-Nguyen A, Dulery R, Ledraa T, Malard F, Mediavilla C, Mohty M, Vekhoff A, Teshima T, Kato K. UCART19, a first-in-class allogeneic anti-CD19 chimeric antigen receptor T-cell therapy for adults with relapsed or refractory B-cell acute lymphoblastic leukaemia (CALM): a phase 1, dose-escalation trial. The Lancet Haematology 2022; 9:e833-e843. [DOI: 10.1016/s2352-3026(22)00245-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Revised: 06/18/2022] [Accepted: 07/19/2022] [Indexed: 12/16/2022]
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Silveira B, Belo J, Pinto R, Silva J, Ferreira T, Pires A, Chu V, Conde J, Frazão O, Pereira A. Magnetostriction in Amorphous Co 66Fe 34 Microcantilevers Fabricated with Hydrogenated Amorphous Silicon. EPJ Web Conf 2020. [DOI: 10.1051/epjconf/202023305003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
To study the magnetostriction of Co66Fe34 thin films, amorphous silicon microcantilevers were prepared by surface micromachining, and the 136 nm-thick magnetostrictive film was deposited by electron beam physical vapor deposition and patterned on top of the microcantilever structure. The magnetostriction of the Co66Fe34 films was confirmed by measuring the deflection of the cantilevers under a varying magnetic field, reaching displacements up to 8 nm. The configuration was simulated using COMSOL software, yielding a similar deflection behavior as a function of the magnetic field, with a film with a magneto strictive coefficient of λ S ~ 55 p.p.m. The experimental configuration uses a laser and a position sensitive detector to measure the displacement, based on an optical lever configuration, and a piezoelectric stage to calibrate the system.
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Um K, McIntyre W, Mendoza P, Duceppe E, Rochwerg B, Healey J, Koziarz A, Lengyel A, Bhatnagar A, Amit G, Chu V, Belley-Côté E. PRE- AND POST-TREATMENT WITH ANTIARRHYTHMIC DRUGS FOR ELECTRICAL CARDIOVERSION OF ATRIAL FIBRILLATION: A NETWORK META-ANALYSIS. Can J Cardiol 2019. [DOI: 10.1016/j.cjca.2019.07.295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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Fosbol E, Park LP, Chu V, Athan E, Delahaye F, Freiberger T, Lamas C, Miro JM, Strahilevitz J, Tribouilloy C, Durante-Mangoni E, Pericas JM, Fernandez-Hidalgo N, Nacinovich F, Rizk H. P2472The association between vegetation size and surgical treatment on 6-month mortality in left-sided infective endocarditis. Eur Heart J 2018. [DOI: 10.1093/eurheartj/ehy565.p2472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- E Fosbol
- University Hospital Gentofte, Copenhagen, Denmark
| | - L P Park
- Duke Clinical Research Institute, Durham, United States of America
| | - V Chu
- Duke Clinical Research Institute, Durham, United States of America
| | - E Athan
- Barwon Health and Deakin University, Geelong, Australia
| | - F Delahaye
- Hospital Louis Pradel of Bron, Lyon, France
| | | | - C Lamas
- National Institute of Cardiology, Rio de Janeiro, Brazil
| | - J M Miro
- Institute of Biomedical Research August Pi Sunyer (IDIBAPS), Barcelona, Spain
| | | | | | - E Durante-Mangoni
- University of Campania, Monaldi Hospital, Internal Medicine, Naples, Italy
| | - J M Pericas
- Institute of Biomedical Research August Pi Sunyer (IDIBAPS), Barcelona, Spain
| | - N Fernandez-Hidalgo
- University Hospital Vall d'Hebron, Servei de Malalties Infeccioses, Barcelona, Spain
| | - F Nacinovich
- Cardiovascular Institute of Buenos Aires (ICBA), Buenos Aires, Argentina
| | - H Rizk
- Cairo University Hospitals, Cairo, Egypt
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Dardik R, Ruggeri ZM, Savion N, Gitel S, Martinowitz U, Chu V, Varon D. Platelet Aggregation on Extracellular Matrix: Effect of a Recombinant GPIb-Binding Fragment of von Willebrand Factor. Thromb Haemost 2018. [DOI: 10.1055/s-0038-1649616] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
SummaryPlatelets in whole blood incubated on extracellular matrix (ECM) produced by bovine corneal endothelial cells under oscillatory flow conditions demonstrate extensive aggregate formation. Since both platelet-subendothelium and platelet-platelet interactions are mediated by von Willebrand factor (vWF), we used this system to examine the effect of a recombinant GPIb-binding fragment of vWF (designated RG12986), comprising residues 445-733 of the native vWF subunit, on platelet reactivity with ECM. The seven cysteines present in the RG12986 fragment were reduced and alkylated in order to achieve a monomeric conformation. The recombinant vWF fragment binds to unstimulated platelets in the absence of exogenous modulators. When added to platelet-rich plasma, it inhibits ristocetin-induced platelet agglutination. Binding of 51Cr-labeled platelets in reconstituted whole blood to ECM was inhibited by RG12986 in a dose dependent and saturable manner, with IC50 of 4 μM and maximal inhibition (about 70%) at 6 μM. Scanning electron microscope (SEM) analysis showed that addition of RG12986 to whole blood significantly inhibited platelet aggregation on ECM. The extent of inhibition observed with RG12986 at a final concentration of 4 μM was similar to that obtained with the cell adhesion peptide RGDS at the concentration of 0.1 mM. The ability of the RG12986 fragment to inhibit platelet aggregation on ECM is in agreement with the concept that blockade of vWF-GPIb interaction may inhibit further events leading to activation of the glycoprotein IIb/IIIa (GPIIb/IIIa) complex and subsequent thrombus formation.
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Affiliation(s)
- R Dardik
- National Hemophilia Center, Sheba Medical Center, Tel Hashomer, Israel
| | - Z M Ruggeri
- Roon Research Center for Arteriosclerosis and Thrombosis, Department of Molecular and Experimental Medicine and Committee on Vascular Biology, The Scripps Research Institute, La Jolla, California, USA
| | - N Savion
- Goldschleger Eye Research Institute, Sackler Faculty of Medicine, Tel Aviv University, Israel
| | - S Gitel
- National Hemophilia Center, Sheba Medical Center, Tel Hashomer, Israel
| | - U Martinowitz
- National Hemophilia Center, Sheba Medical Center, Tel Hashomer, Israel
| | - V Chu
- Rhone-Poulenc Rorer Central Research, King of Prussia, Pennsylvania, USA
| | - D Varon
- National Hemophilia Center, Sheba Medical Center, Tel Hashomer, Israel
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Quintana E, Falces C, Ambrosioni J, Delahaye F, Selton-Suty C, Tribouilloy C, Tornos P, Cecci E, Hannan M, Wang A, Chu V, Llopis J, Miró J. Risk factors and outcomes of fistulous tract formation in infective aortic endocarditis: A prospective ice cohort study. Cirugía Cardiovascular 2018. [DOI: 10.1016/j.circv.2017.12.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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Patel AA, Gilbertson JR, Showe LC, London JW, Ross E, Ochs MF, Carver J, Lazarus A, Parwani AV, Dhir R, Beck JR, Liebman M, Garcia FU, Prichard J, Wilkerson M, Herberman RB, Becich MJ, Whelan N, Mathews L, Winters S, Urda S, Gianella H, Bisceglia M, Gupta R, Singh H, Li S, Nie Y, Chu V, Mohanty S, Mann D, Mignogna L, Bordonaba FM, Katsur A, Kirkwood J, Brufsky A, Colecchia T, Green C, Glick J, Tigges J, Fenstermacher D, Rebbeck TR, DeMichele A, Weber B, Guerry D, Poppert E, Haney K, Brusstar S, Malick J, Haney K, Capriotti A, Balshem A, Uzzo RG, Goldstein LJ, Lessin SR, Harsche P, London W, Davidson RL, deBaca M, Orrico AR, Hannes A, Palazzo JP, Dicker A, Mastrangelo M, Chou K, Loughran T, Whayland P, Swetland P, Lazarus P, Harriet I, Beard D, Loughran T, Snyder AJ, Rybka WB, Lorence D, Lipton A, Harvey HA, Robertson G, Claxton D, Rauscher R, Carlisle J, Kaufman RE, Ewert D, O'Brien E, Melnicoff M, Blank K, Hailu T, Petushi S, Steele GD, Buckley S, Hunter N, Yantus K, Hu H, Sheridan C, Rigby H, Jacobs FN, Bronder P, Palmer D, Glick JH. A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC). Cancer Inform 2017. [DOI: 10.1177/117693510700300002] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Background The Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC, http://www.pcabc.upmc.edu ) is one of the first major project-based initiatives stemming from the Pennsylvania Cancer Alliance that was funded for four years by the Department of Health of the Commonwealth of Pennsylvania. The objective of this was to initiate a prototype biorepository and bioinformatics infrastructure with a robust data warehouse by developing a statewide data model (1) for bioinformatics and a repository of serum and tissue samples; (2) a data model for biomarker data storage; and (3) a public access website for disseminating research results and bioinformatics tools. The members of the Consortium cooperate closely, exploring the opportunity for sharing clinical, genomic and other bioinformatics data on patient samples in oncology, for the purpose of developing collaborative research programs across cancer research institutions in Pennsylvania. The Consortium's intention was to establish a virtual repository of many clinical specimens residing in various centers across the state, in order to make them available for research. One of our primary goals was to facilitate the identification of cancer-specific biomarkers and encourage collaborative research efforts among the participating centers. Methods The PCABC has developed unique partnerships so that every region of the state can effectively contribute and participate. It includes over 80 individuals from 14 organizations, and plans to expand to partners outside the State. This has created a network of researchers, clinicians, bioinformaticians, cancer registrars, program directors, and executives from academic and community health systems, as well as external corporate partners - all working together to accomplish a common mission. The various sub-committees have developed a common IRB protocol template, common data elements for standardizing data collections for three organ sites, intellectual property/tech transfer agreements, and material transfer agreements that have been approved by each of the member institutions. This was the foundational work that has led to the development of a centralized data warehouse that has met each of the institutions’ IRB/HIPAA standards. Results Currently, this “virtual biorepository” has over 58,000 annotated samples from 11,467 cancer patients available for research purposes. The clinical annotation of tissue samples is either done manually over the internet or semi-automated batch modes through mapping of local data elements with PCABC common data elements. The database currently holds information on 7188 cases (associated with 9278 specimens and 46,666 annotated blocks and blood samples) of prostate cancer, 2736 cases (associated with 3796 specimens and 9336 annotated blocks and blood samples) of breast cancer and 1543 cases (including 1334 specimens and 2671 annotated blocks and blood samples) of melanoma. These numbers continue to grow, and plans to integrate new tumor sites are in progress. Furthermore, the group has also developed a central web-based tool that allows investigators to share their translational (genomics/proteomics) experiment data on research evaluating potential biomarkers via a central location on the Consortium's web site. Conclusions The technological achievements and the statewide informatics infrastructure that have been established by the Consortium will enable robust and efficient studies of biomarkers and their relevance to the clinical course of cancer.
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Affiliation(s)
- Ashokkumar A. Patel
- Center for Pathology Informatics, Benedum Oncology Informatics Center, University of Pittsburgh Cancer Institute
| | - John R. Gilbertson
- Center for Pathology Informatics, Benedum Oncology Informatics Center, University of Pittsburgh Cancer Institute
| | | | | | | | | | - Joseph Carver
- Abramson Cancer Center of the University of Pennsylvania
| | - Andrea Lazarus
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical Center
| | - Anil V. Parwani
- Center for Pathology Informatics, Benedum Oncology Informatics Center, University of Pittsburgh Cancer Institute
| | - Rajiv Dhir
- Center for Pathology Informatics, Benedum Oncology Informatics Center, University of Pittsburgh Cancer Institute
| | | | | | | | | | | | - Ronald B. Herberman
- Center for Pathology Informatics, Benedum Oncology Informatics Center, University of Pittsburgh Cancer Institute
| | - Michael J. Becich
- Center for Pathology Informatics, Benedum Oncology Informatics Center, University of Pittsburgh Cancer Institute
| | | | | | | | - Susan Urda
- University of Pittsburgh Cancer Institute
| | | | | | | | | | - Songhui Li
- University of Pittsburgh Cancer Institute
| | - Yimin Nie
- University of Pittsburgh Cancer Institute
| | - Vicky Chu
- University of Pittsburgh Cancer Institute
| | | | | | | | | | | | | | | | | | | | - John Glick
- Abramson Cancer Center of the University of Pennsylvania
| | - Jesse Tigges
- Abramson Cancer Center of the University of Pennsylvania
| | | | | | | | - Barbara Weber
- Abramson Cancer Center of the University of Pennsylvania
| | - DuPont Guerry
- Abramson Cancer Center of the University of Pennsylvania
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Adler Hannes
- Kimmel Cancer Center of Thomas Jefferson University
| | | | - Adam Dicker
- Kimmel Cancer Center of Thomas Jefferson University
| | | | | | - Thomas Loughran
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Pam Whayland
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Pat Swetland
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Philip Lazarus
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Isom Harriet
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Dan Beard
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Thomas Loughran
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Alan J. Snyder
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Witold B. Rybka
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Daniel Lorence
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Allan Lipton
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Harold A. Harvey
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Gavin Robertson
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - David Claxton
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | - Richard Rauscher
- Pennsylvania State Cancer Institute at Milton S. Hershey Medical
| | | | | | | | | | | | | | | | | | | | | | | | | | - Hai Hu
- Windber Research Institute
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Pinto I, Caneira C, Soares R, Madaboosi N, Aires-Barros M, Conde J, Azevedo A, Chu V. The application of microbeads to microfluidic systems for enhanced detection and purification of biomolecules. Methods 2017; 116:112-124. [DOI: 10.1016/j.ymeth.2016.12.005] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Revised: 12/07/2016] [Accepted: 12/08/2016] [Indexed: 01/15/2023] Open
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Silva D, Azevedo A, Fernandes P, Chu V, Conde J, Aires-Barros M. Determination of partition coefficients of biomolecules in a microfluidic aqueous two phase system platform using fluorescence microscopy. J Chromatogr A 2017; 1487:242-247. [DOI: 10.1016/j.chroma.2016.12.036] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Revised: 12/02/2016] [Accepted: 12/14/2016] [Indexed: 10/20/2022]
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Tzouvadaki I, Madaboosi N, Taurino I, Chu V, Conde JP, De Micheli G, Carrara S. Study on the bio-functionalization of memristive nanowires for optimum memristive biosensors. J Mater Chem B 2016; 4:2153-2162. [DOI: 10.1039/c6tb00222f] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Semiconductor nanowires are emerging as promising building blocks for biosensors enabling direct electrical detection of various biomolecules.
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Affiliation(s)
- I. Tzouvadaki
- Integrated System Laboratory EPFL
- Lausanne
- Switzerland
| | - N. Madaboosi
- INESC Microsistemas e Nanotecnologias and IN-Institute of Nanoscience and Nanotechnology
- Lisbon 1000-029
- Portugal
| | - I. Taurino
- Integrated System Laboratory EPFL
- Lausanne
- Switzerland
| | - V. Chu
- INESC Microsistemas e Nanotecnologias and IN-Institute of Nanoscience and Nanotechnology
- Lisbon 1000-029
- Portugal
| | - J. P. Conde
- INESC Microsistemas e Nanotecnologias and IN-Institute of Nanoscience and Nanotechnology
- Lisbon 1000-029
- Portugal
- Department of Bioengineering
- Instituto Superior Técnico
| | - G. De Micheli
- Integrated System Laboratory EPFL
- Lausanne
- Switzerland
| | - S. Carrara
- Integrated System Laboratory EPFL
- Lausanne
- Switzerland
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Jacinto M, Soares R, Azevedo A, Chu V, Tover A, Conde J, Aires-Barros M. Optimization and miniaturization of aqueous two phase systems for the purification of recombinant human immunodeficiency virus-like particles from a CHO cell supernatant. Sep Purif Technol 2015. [DOI: 10.1016/j.seppur.2015.09.006] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Goh YL, Chu V, Tokala A, Shetty VD, Ward JB, Date RS. Distal antral gastropexy - a novel technique to prevent recurrence of giant hiatus hernia in selected cases - a cohort study. Int J Surg 2015; 15:23-6. [PMID: 25641717 DOI: 10.1016/j.ijsu.2015.01.026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2014] [Revised: 01/15/2015] [Accepted: 01/26/2015] [Indexed: 12/31/2022]
Abstract
INTRODUCTION The recurrence rate of giant hiatus hernias (GHH) following repair is high (30%) and increases with the hernia size and previous revision surgery. The mechanism of recurrence is poorly understood. METHODS This is a retrospective cohort study of all consecutive patients who underwent repair of giant hiatus hernia in a tertiary upper GI referral centre from November 2000 to November 2014. Patients who underwent redo surgery were identified and data on intra-operative findings and procedure performed at primary and redo surgery from their operation notes were collected. RESULTS A total of 81 patients underwent primary repair of GHH over the 14 year study period. 10 (12.3%) had symptomatic/radiological recurrence of which 4 were found to have the distal stomach herniating into the chest despite having an intact intra-abdominal wrap/gastropexy. To prevent migration of the distal stomach into the chest, distal gastropexy - fixing the antrum to the anterior abdominal wall, was added to 'conventional' gastropexy in 5 subsequent cases, in whom the antrum was in the chest preoperatively. These cases have no evidence of recurrence at the end of 6 months follow up. CONCLUSION Securing the antrum of stomach to the anterior abdominal wall may prevent migration of the distal stomach and other infracolic organs into the chest and thus reduce recurrence of some GHH where antrum had been in chest previously.
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Affiliation(s)
- Y L Goh
- Department of Upper GI Surgery, Lancashire Teaching Hospitals NHS Foundation Trust, United Kingdom
| | - V Chu
- Department of Upper GI Surgery, Lancashire Teaching Hospitals NHS Foundation Trust, United Kingdom
| | - A Tokala
- Department of Upper GI Surgery, Lancashire Teaching Hospitals NHS Foundation Trust, United Kingdom
| | - V D Shetty
- Department of Upper GI Surgery, Lancashire Teaching Hospitals NHS Foundation Trust, United Kingdom
| | - J B Ward
- Department of Upper GI Surgery, Lancashire Teaching Hospitals NHS Foundation Trust, United Kingdom
| | - R S Date
- Department of Upper GI Surgery, Lancashire Teaching Hospitals NHS Foundation Trust, United Kingdom.
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Soares RRG, Novo P, Azevedo AM, Fernandes P, Aires-Barros MR, Chu V, Conde JP. On-chip sample preparation and analyte quantification using a microfluidic aqueous two-phase extraction coupled with an immunoassay. Lab Chip 2014; 14:4284-4294. [PMID: 25228473 DOI: 10.1039/c4lc00695j] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Immunoassays are fast and sensitive techniques for analyte quantification, and their use in point-of-care devices for medical, environmental, and food safety applications has potential benefits of cost, portability, and multiplexing. However, immunoassays are often affected by matrix interference effects, requiring the use of complex laboratory extraction and concentration procedures in order to achieve the required sensitivity. In this paper we propose an integrated microfluidic device for the simultaneous matrix clean-up, concentration and detection. This device consists of two modules in series, the first performing an aqueous two-phase extraction (ATPE) for matrix extraction and analyte pre-concentration, and the second an immunoassay for quantification. The model analyte was the mycotoxin ochratoxin A (OTA) in a wine matrix. Using this strategy, a limit of detection (LoD) of 0.26 ng mL(-1) was obtained for red wine spiked with OTA, well below the regulatory limit for OTA in wines of 2 ng mL(-1) set by the European Union. Furthermore, the linear response on the logarithmic concentration scale was observed to span 3 orders of magnitude (0.1-100 ng mL(-1)). These results are comparable to those obtained for the quantification of OTA in plain buffer without an integrated ATPE (LoD = 0.15 ng mL(-1)). The proposed method was also found to provide similar results for markedly different matrices, such as red and white wines. This novel approach based on aqueous two-phase systems can help the development of point-of-care devices that can directly deal with real samples in complex matrices without the need for extra extraction processes and equipment.
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Affiliation(s)
- R R G Soares
- INESC Microsistemas e Nanotecnologias and IN-Institute of Nanoscience and Nanotechnology, Lisbon, Portugal.
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Silva D, Azevedo A, Fernandes P, Chu V, Conde J, Aires-Barros M. Determination of aqueous two phase system binodal curves using a microfluidic device. J Chromatogr A 2014; 1370:115-20. [DOI: 10.1016/j.chroma.2014.10.035] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2014] [Revised: 09/03/2014] [Accepted: 10/10/2014] [Indexed: 10/24/2022]
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Novo P, Chu V, Conde J. Integrated optical detection of autonomous capillary microfluidic immunoassays:a hand-held point-of-care prototype. Biosens Bioelectron 2014; 57:284-91. [DOI: 10.1016/j.bios.2014.02.009] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2013] [Revised: 01/22/2014] [Accepted: 02/05/2014] [Indexed: 10/25/2022]
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Martins S, Moulas G, Trabuco J, Monteiro G, Chu V, Conde J, Prazeres D. Monitoring intracellular calcium in response to GPCR activation using thin-film silicon photodiodes with integrated fluorescence filters. Biosens Bioelectron 2014; 52:232-8. [DOI: 10.1016/j.bios.2013.08.037] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2013] [Revised: 08/11/2013] [Accepted: 08/12/2013] [Indexed: 12/29/2022]
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Martins DC, Chu V, Conde JP. The effect of the surface functionalization and the electrolyte concentration on the electrical conductance of silica nanochannels. Biomicrofluidics 2013; 7:34111. [PMID: 24404031 PMCID: PMC3702594 DOI: 10.1063/1.4811277] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Accepted: 05/31/2013] [Indexed: 05/09/2023]
Abstract
It is known that the conductance of nanochannels as a function of electrolyte concentration deviates from a linearly proportional relationship and approaches a value independent of the concentration as the electrolyte concentration is lowered. Most of the proposed models account for this behavior by considering a constant surface charge density and an ideal electrolyte solution. However, at low electrolyte concentrations, the ideal electrolyte approximation is no longer valid because the ions that result from the atmospheric carbon dioxide dissolution in water dominate the ionic concentration. In this paper, arrays of silica nanochannels were electrically characterized via conductance measurements. The conductance at low salt concentrations is modeled by a variable surface charge model that accounts for all ionic species in solution. This model was used to determine the variable surface charge of the bare silica nanochannels as well as of chemically modified nanochannels. The model correctly predicted the variation of the nanochannel conductance observed after silane (aminopropyldimethylethoxysilane) functionalization and single-strand DNA immobilization. Finally, pH modification of bulk KCl solutions was employed as an alternative method of changing the surface charge of silica nanochannels. Surface charge calculated from conductance measurements performed at different bulk pH values confirmed that the surface charge of the silica nanochannel walls is sensitive to the H(+) concentration.
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Affiliation(s)
- D C Martins
- INESC Microsistemas e Nanotecnologias (INESC MN) and IN-Institute of Nanoscience and Nanotechnology, Rua Alves Redol, 9, 1000-029 Lisbon, Portugal
| | - V Chu
- INESC Microsistemas e Nanotecnologias (INESC MN) and IN-Institute of Nanoscience and Nanotechnology, Rua Alves Redol, 9, 1000-029 Lisbon, Portugal
| | - J P Conde
- INESC Microsistemas e Nanotecnologias (INESC MN) and IN-Institute of Nanoscience and Nanotechnology, Rua Alves Redol, 9, 1000-029 Lisbon, Portugal ; Department of Bioengineering, Instituto Superior Técnico, 1049-001 Lisbon, Portugal
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Silva D, Azevedo A, Fernandes P, Chu V, Conde J, Aires-Barros M. Design of a microfluidic platform for monoclonal antibody extraction using an aqueous two-phase system. J Chromatogr A 2012; 1249:1-7. [DOI: 10.1016/j.chroma.2012.05.089] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2012] [Revised: 05/23/2012] [Accepted: 05/25/2012] [Indexed: 10/28/2022]
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Wong V, Cheuk DKL, Lee S, Chu V. Accupouncture for acute management and rehabilitation of traumatic brain injury. Eur J Phys Rehabil Med 2012; 48:71-86. [PMID: 22679638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
BACKGROUND Traumatic brain injury (TBI) can be life threatening depending on the severity of the insult to the brain. It can also cause a range of debilitating sequelae which require cognitive, motor, communication, emotional, or behavioral rehabilitation of varying intensity and duration. A number of studies conducted and published in China have suggested that acupuncture may be beneficial in the acute treatment and rehabilitation of TBI. The aim of this paper was to determine the efficacy and safety of acupuncture in the acute management or rehabilitation (or both) of patients with a TBI, including cognitive, neurological, motor, communication, emotional, or behavioral complications, or a combination of such complications. METHODS We searched the Cochrane Injuries Group Specialised Register, Cochrane Central Register of Controlled Trials 2008, Issue 2 (The Cochrane Library), MEDLINE, EMBASE, CINAHL, AMED, PsycINFO and others. We also searched the Chinese Acupuncture Studies Register, the Studies Register of the Cochrane Complementary Medicine Field, NCCAM, and NIH Clinical Studies Database. Three major Mainland Chinese academic literature databases (CNKI, VIP and Wang Fang Data) were also searched using keywords in simplified Chinese. Searches were completed in December 2009. Randomized controlled studies evaluating different variants of acupuncture and involving participants of any age who had suffered a TBI. Included trials compared acupuncture with placebo or sham treatment, or acupuncture plus other treatments compared with the same other treatments.We excluded trials that only compared different variants of acupuncture or compared acupuncture alone against other treatments alone, as they did not yield the net effect of acupuncture. Two review authors identified potential articles from the literature search and extracted data independently using a data extraction form. We performed methodological assessment of included studies using the Cochrane Collaboration's tool for assessing risk of bias. We were unable to perform quantitative data analysis due to insufficient included studies and available data. RESULTS Four RCTs, including 294 participants, reported outcomes specified by this review. Three investigated electro-acupuncture for TBI while one investigated acupuncture for acute TBI. The results seem to suggest that acupuncture is efficacious for these indications, however the low methodological quality of these studies renders the results questionable. No adverse effects of acupuncture were reported in any of the studies. CONCLUSIONS The low methodological quality of the included studies does not allow us to make conclusive judgments on the efficacy and safety of acupuncture in either the acute treatment and/or rehabilitation of TBI. Its beneficial role for these indications remains uncertain. Further research with high quality trials is required.
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Affiliation(s)
- V Wong
- Department of Pediatrics and Adolescent Medicine, The University of Hong Kong, Queen Mary Hospital, SAR, China.
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Fixe F, Branz H, Prazeres D, Chu V, Conde J. Covalent immobilization of DNA and hybridization on microchips by microsecond electric field pulses. ACTA ACUST UNITED AC 2011. [DOI: 10.1557/proc-820-o2.8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
AbstractSingle square voltage pulses were used to enhance by 7 and 9 orders of magnitude the rate of covalent immobilization and hybridization, respectively, of single stranded DNA probes on a chemically functionalized thin film surface (silicon dioxide) using 2 mm size electrodes. These electrodes were scaled down to 20 μm. Photolithography was used to define the electrode voltage line, ground line, and functionalized thin-film area on a plastic substrate (polyimide). At all electrode dimensions, electric field-assisted DNA immobilization and hybridization can be achieved in the microsecond time scale, far faster than the 2 hr or 16 hr needed for immobilization and hybridization, respectively, without the electric field. Pulse conditions optimized with the large-size electrodes (2 mm) were used in the microelectrodes.
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Shen DS, Aljishi S, Smith ZE, Conde JP, Chu V, Wagner S. Time-of-Flight Measurements in a-Si:H Between Room Temperature and 130° C°. ACTA ACUST UNITED AC 2011. [DOI: 10.1557/proc-95-95] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
AbstractThe drift mobility μd and the mobility-lifetime product μτ in undoped a-Si:H have been studied up to 130°C. The electron μde is temperature-activated with Eae = 0.13 to 0.16 eV. The electron (μτ)e increases with temperature T. For hole transport, we observe the transition from dispersive to non-dispersive transport with increasing T. The hole μdh is ∼ 1/100 of μde, and is activated with Eah = 0.34 to 0.48eV. The hole (μτ)h does not change much with T. A computer simulation demonstrates the high sensitivity of μd to the band tail width.
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Pereira AT, Novo P, Prazeres DMF, Chu V, Conde JP. Heterogeneous immunoassays in microfluidic format using fluorescence detection with integrated amorphous silicon photodiodes. Biomicrofluidics 2011; 5:14102. [PMID: 21403847 PMCID: PMC3055902 DOI: 10.1063/1.3553014] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2010] [Accepted: 01/07/2011] [Indexed: 05/09/2023]
Abstract
Miniaturization of immunoassays through microfluidic technology has the potential to decrease the time and the quantity of reactants required for analysis, together with the potential of achieving multiplexing and portability. A lab-on-chip system incorporating a thin-film amorphous silicon (a-Si:H) photodiode microfabricated on a glass substrate with a thin-film amorphous silicon-carbon alloy directly deposited above the photodiode and acting as a fluorescence filter is integrated with a polydimethylsiloxane-based microfluidic network for the direct detection of antibody-antigen molecular recognition reactions using fluorescence. The model immunoassay used consists of primary antibody adsorption to the microchannel walls followed by its recognition by a secondary antibody labeled with a fluorescent quantum-dot tag. The conditions for the flow-through analysis in the microfluidic format were defined and the total assay time was 30 min. Specific molecular recognition was quantitatively detected. The measurements made with the a-Si:H photodiode are consistent with that obtained with a fluorescence microscope and both show a linear dependence on the antibody concentration in the nanomolar-micromolar range.
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Abstract
AbstractSurface micromachining is used with amorphous silicon, microcrystalline silicon, silicon nitride and aluminum films as structural materials to form bridge and cantilever structures. Low temperature processing (between 110 and 250 °C) allowed fabrication of structures and devices on glass substrates. Two processes involving different materials as the sacrificial layer are presented: silicon nitride and photoresist. The mechanical integrity of the fabricated structures is discussed. As examples of possible device applications of this technology, air-gap thin film transistors and the electrostatic actuation of bridges and cantilevers are presented.
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Abstract
AbstractHydrogenated amorphous silicon-carbon alloys are prepared using electron-cyclotron resonance (ECR) plasma-enhanced chemical-vapor deposition. Hydrogen is used as the excitation gas in the resonance chamber while silane and methane (or ethylene) are introduced in the main chamber. A minimum of 95% hydrogen dilution is used. The microwave power is kept constant at 150 W. The effect of the type of carbon source gas, silane to carbon source gas ratio, deposition pressure, substrate temperature and hydrogen dilution on the deposition rate, bandgap and Urbach energy are studied. The photoconductivity and the Urbach energy of the ECR-deposited films are compared to those prepared with glow discharge with the same bandgap.
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Abstract
AbstractThis paper reports on the fabrication and characterization of microelectromechanical bridge resonators on glass substrates using thin-film technology and surface micromachining. All the processing steps are performed at temperatures below 110°C. The microbridges consist of either a single layer of heavily doped n-type amorphous silicon (n+-a-Si:H) or bilayers of aluminum (Al) and intrinsic a-Si:H. The bridge is suspended over a gate electrode with a 1 μm air-gap. Applying a voltage between the bridge and an underlying Al gate electrode electrostatically actuates the microstructures. The resulting deflection is monitored optically. The resonance of the microbridges is measured in air and in vacuum. Resonance frequencies up to 70 MHz and quality factors up to 3000 are obtained at pressures below 1 Torr. The energy dissipation mechanisms of the resonators are discussed.
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Fixe F, Faber A, Gonçalves D, Prazeres D, Cabeça R, Chu V, Ferreira G, Conde J. Thin film micro arrays with immobilized DNA for hybridization analysis. ACTA ACUST UNITED AC 2011. [DOI: 10.1557/proc-723-o2.3] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
AbstractIn this work, a procedure to immobilize DNA probes on a microarray patterned on a flexible plastic substrate is developed. The method involves the chemical activation of a thin film surface, the introduction of amine functionality via a silanization step, the coupling of an adequate crosslinker and finally the immobilization of the DNA probe. The response of different thin-film materials and plastic substrates to the immobilization procedure is discussed. The DNA probes immobilized in the patterned pixels were then allowed to hybridize with complementary target DNA labeled with a fluorescent molecule. A prototype array of thin film pixels of SiO2 functionalized by silanization deposited over a polyimide substrate is demonstrated.
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Novo P, Moulas G, Prazeres D, Chu V, Conde J. Lab-on-a-Chip Ochratoxin A Detection Using Competitive ELISA in Microfluidics with Integrated Photodiode Signal Acquisition. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.proeng.2011.12.297] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Tleyjeh I, George M, Abdulhak AB, Patricia E, Chu V, Ezzati M, Hoen B, Baddour L. The global burden of infective endocarditis: Methodology for a systematic review to assess disease burden and trends in 21 world regions for 1990-2005. Int J Infect Dis 2010. [DOI: 10.1016/j.ijid.2010.02.1615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Abdulhak AB, George M, Baddour L, Patricia E, Chu V, Ezzati M, Hoen B, Tleyjeh I. A comparison of infective endocarditis related Sequelae incidence among population- based, multicenter, and hospital-based cohorts: Data trom a systematic review for the global burden of disease project. Int J Infect Dis 2010. [DOI: 10.1016/j.ijid.2010.02.1613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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Wong V, Li L, Lam S, Wong C, Chu V. PO16-TU-10 Pilot project of integration of Chinese medicine (acupuncture) and western medicine for neurohabilitation of children with acquired brain injury – a study of 2 cases. J Neurol Sci 2009. [DOI: 10.1016/s0022-510x(09)70907-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Harding T, Chu V, Shahid R, Drew L, Corey R, Baloch K. 002 PUBLICATIONS: LESSONS LEARNED FROM THE ICE NETWORK. Int J Antimicrob Agents 2009. [DOI: 10.1016/s0924-8579(09)70021-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Baloch K, Chu V, Shahid R, Drew L, Corey R, Harding T. 001 THE ICE NETWORK: PAST, PRESENT AND FUTURE. Int J Antimicrob Agents 2009. [DOI: 10.1016/s0924-8579(09)70020-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Cabeça R, Rodrigues M, Prazeres DMF, Chu V, Conde JP. The effect of the shape of single, sub-ms voltage pulses on the rates of surface immobilization and hybridization of DNA. Nanotechnology 2009; 20:015503. [PMID: 19417254 DOI: 10.1088/0957-4484/20/1/015503] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Electric fields generated by single square and sinusoidal voltage pulses with amplitudes below 2 V were used to assist the covalent immobilization of single-stranded, thiolated DNA probes, onto a chemically functionalized SiO2 surface and to assist the specific hybridization of single-stranded DNA targets with immobilized complementary probes. The single-stranded immobilized DNA probes were either covalently immobilized (chemisorption) or electrostatically adsorbed (physisorption) to a chemically functionalized surface. Comparing the speed of electric field assisted immobilization and hybridization with the corresponding control reactions (without electric field), an increase of several orders of magnitude is observed, with the reaction timescaled down from 1 to 2 h to a range between 100 ns and 1 ms. The influence of the shape of the voltage pulse (square versus sinusoidal) and its duration were studied for both immobilization and hybridization reactions. The results show that pulsed electric fields are a useful tool to achieve temporal and spatial control of surface immobilization and hybridization reactions of DNA.
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Affiliation(s)
- R Cabeça
- INESC Microsistemas e Nanotecnologias and IN-Institute of Nanoscience and Nanotechnology, Rua Alves Redol, 9, 1000-029 Lisbon, Portugal.
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Gonçalves D, Prazeres D, Chu V, Conde J. Detection of DNA and proteins using amorphous silicon ion-sensitive thin-film field effect transistors. Biosens Bioelectron 2008; 24:545-51. [DOI: 10.1016/j.bios.2008.05.006] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2007] [Revised: 05/01/2008] [Accepted: 05/20/2008] [Indexed: 10/22/2022]
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Chu V, Garcia M, Vasan R, Cura M. Abstract No. 118: How Well Can CT Predict the Presence of Arterial Injury in Patients with Pelvic Trauma? J Vasc Interv Radiol 2008. [DOI: 10.1016/j.jvir.2007.12.131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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Abstract
AIM To determine the prevalence of concomitant developmental dental anomalies in a group of Chinese children with dens evaginatus. METHODS The dental records and orthopantomograms of 10-15 year old children and adolescents who had been diagnosed with dens evaginatus in a school dental clinic were reviewed retrospectively. RESULTS Four hundred and forty-eight of 7102 (6.3%) children were found to have dens evaginatus. Concomitant developmental dental anomalies were found in 77 children (17.2%). The most commonly seen dental anomalies in the study population were hypodontia, hyperdontia, microdontic maxillary lateral incisor, and dental impaction. The prevalence of these anomalies did not differ significantly to that found in the general Chinese population. When analysed separately, however, the prevalence of supernumerary premolars was found to be higher in children with dens evaginatus than in the general population, and the difference was statistically significant (P < 0.01). CONCLUSION Supernumerary premolars appeared to be more prevalent in Chinese children with dens evaginatus than in the general population. There may be an association of supernumerary premolars with dens evaginatus in this study population.
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Affiliation(s)
- S Y Cho
- School Dental Care Service, Department of Health, Hong Kong.
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Chu VC, McElroy LJ, Chu V, Bauman BE, Whittaker GR. The avian coronavirus infectious bronchitis virus undergoes direct low-pH-dependent fusion activation during entry into host cells. J Virol 2006; 80:3180-8. [PMID: 16537586 PMCID: PMC1440383 DOI: 10.1128/jvi.80.7.3180-3188.2006] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Coronaviruses are the causative agents of respiratory disease in humans and animals, including severe acute respiratory syndrome. Fusion of coronaviruses is generally thought to occur at neutral pH, although there is also evidence for a role of acidic endosomes during entry of a variety of coronaviruses. Therefore, the molecular basis of coronavirus fusion during entry into host cells remains incompletely defined. Here, we examined coronavirus-cell fusion and entry employing the avian coronavirus infectious bronchitis virus (IBV). Virus entry into cells was inhibited by acidotropic bases and by other inhibitors of pH-dependent endocytosis. We carried out fluorescence-dequenching fusion assays of R18-labeled virions and show that for IBV, coronavirus-cell fusion occurs in a low-pH-dependent manner, with a half-maximal rate of fusion occurring at pH 5.5. Fusion was reduced, but still occurred, at lower temperatures (20 degrees C). We observed no effect of inhibitors of endosomal proteases on the fusion event. These data are the first direct measure of virus-cell fusion for any coronavirus and demonstrate that the coronavirus IBV employs a direct, low-pH-dependent virus-cell fusion activation reaction. We further show that IBV was not inactivated, and fusion was unaffected, by prior exposure to pH 5.0 buffer. Virions also showed evidence of reversible conformational changes in their surface proteins, indicating that aspects of the fusion reaction may be reversible in nature.
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Affiliation(s)
- Victor C Chu
- Dept. of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA
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Fixe F, Chu V, Prazeres DMF, Conde JP. Single base mismatch detection by microsecond voltage pulses. Biosens Bioelectron 2005; 21:888-93. [PMID: 16257657 DOI: 10.1016/j.bios.2005.02.011] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2004] [Revised: 02/14/2005] [Accepted: 02/15/2005] [Indexed: 11/26/2022]
Abstract
A single square voltage pulse applied to metal electrodes underneath a silicon dioxide film upon which DNA probes are immobilized allows the discrimination of DNA targets with a single base mismatch during hybridization. Pulse duration, magnitude and slew rate of the voltage pulse are all key factors controlling the rates of electric field assisted hybridization. Although pulses with 1 V, lasting less than 1 ms and with a rise/fall times of 4.5 ns led to maximum hybridization of fully complementary strands, lack of stringency did not allow the discrimination of single base mismatches. However, by choosing pulse conditions that are slightly off the optimum, the selectivity for discriminating single base mismatches could be improved up to a factor approximately 5 when the mismatch was in the middle of the strand and up to approximately 1.5 when the mismatch was on the 5'-end and. These results demonstrate that hybridization with the appropriate electric field pulse provides a new, site-specific, approach to the discrimination of single nucleotide polymorphisms in the sub-millisecond time scale, for addressable DNA microarrays.
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Affiliation(s)
- F Fixe
- INESC-Microsistemas and Nanotecnologias, INESC MN, Rua Alves Redol, 9, 1000-029 Lisboa, Portugal
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Fixe F, Branz HM, Louro N, Chu V, Prazeres DMF, Conde JP. Electric-field assisted immobilization and hybridization of DNA oligomers on thin-film microchips. Nanotechnology 2005; 16:2061-71. [PMID: 20817972 DOI: 10.1088/0957-4484/16/10/014] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Single, square voltage pulses in the microsecond timescale result in selective 5'-end covalent bonding (immobilization) of thiolated single-stranded (ss) DNA probes to a modified silicon dioxide flat surface and in specific hybridization of ssDNA targets to the immobilized probe. Immobilization and hybridization rates using microsecond voltage pulses at or below 1 V are at least 10(8) times faster than in the passive control reactions performed without electric field (E), and can be achieved with at least three differently functionalized thin-film surfaces on plastic or glass substrates. The systematic study of the effect of DNA probe and target concentrations, of DNA probe and target length, and the application of asymmetric pulses on E-assisted DNA immobilization and hybridization showed that: (1) the rapidly rising edge of the pulse is most critical to the E-assisted processes, but the duration of the pulse is also important; (2) E-assisted immobilization and hybridization can be performed with micrometre-sized pixels, proving the potential for use on microelectronic length scales, and the applied voltage can be scaled down together with the electrode spacing to as low as 25 mV; and (3) longer DNA chains reduce the yield in the E-assisted immobilization and hybridization because the density of physisorbed single-stranded DNA is reduced. The results show that the E-induced reactions can be used as a general method in DNA microarrays to produce high-density DNA chips (E-immobilization) and speed the microarray-based analysis (E-hybridization).
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Affiliation(s)
- F Fixe
- INESC Microsistemas e Nanotecnologias (INESC-MN), Rua Alves Redol, 9, 1000-029 Lisboa, Portugal. Centro de Engenharia Biológica e Química, Instituto Superior Técnico, Avenida Rovisco Pais, 1049-001 Lisboa, Portugal
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Fixe F, Branz HM, Louro N, Chu V, Prazeres DMF, Conde JP. Immobilization and hybridization by single sub-millisecond electric field pulses, for pixel-addressed DNA microarrays. Biosens Bioelectron 2004; 19:1591-7. [PMID: 15142592 DOI: 10.1016/j.bios.2003.12.012] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2003] [Revised: 12/11/2003] [Accepted: 12/12/2003] [Indexed: 11/22/2022]
Abstract
Single square voltage pulses applied to buried electrodes result in dramatic rate increases for (1) selective covalent bonding (immobilization) of single-stranded DNA (ssDNA) probes to a functionalized thin film SiO(2) surface on a plastic substrate and (2) hybridization of ssDNA to the immobilized probe. DNA immobilization and hybridization times are 100 ns and 10 micros, respectively, about 10(9) times faster than the corresponding passive reactions without electric field. Surface coverage is comparable. Duration, magnitude and slew rate of the voltage pulse are all key factors controlling the rates of ssDNA immobilization and hybridization. With rise times of 4.5 ns, pulses shorter than 1 ms and voltages below 1V are effective. The ssDNA adsorbed on the surface is reoriented by the rapidly changing electric field. This reduces steric barriers and speeds the immobilization and hybridization reactions. These results open the way for pixel-addressed microarrays driven by silicon microelectronics circuits.
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Affiliation(s)
- F Fixe
- INESC Microsistemas e Nanotecnologias (INESC-MN), Rua Alves Redol, 9, 1000-029 Lisbon, Portugal.
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Fixe F, Chu V, Prazeres DMF, Conde JP. An on-chip thin film photodetector for the quantification of DNA probes and targets in microarrays. Nucleic Acids Res 2004; 32:e70. [PMID: 15148343 PMCID: PMC419621 DOI: 10.1093/nar/gnh066] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A flat microdevice which incorporates a thin-film amorphous silicon (a-Si:H) photodetector with an upper layer of functionalized SiO2 is used to quantify the density of both immobilized and hybridized DNA oligonucleotides labeled with a fluorophore. The device is based on the photoconductivity of hydrogenated amorphous silicon in a coplanar electrode configuration. Excitation, with near UV/blue light, of a single-stranded DNA molecule tagged with the fluorophore 1-(3-(succinimidyloxycarbonyl)benzyl)-4-(5-(4-methoxyphenyl)oxazol-2-yl) pyridinium bromide (PyMPO), results in the emission of visible light. The emitted light is then converted into an electrical signal in the photodetector, thus allowing the optoelectronic detection of the DNA molecules. The detection limit of the present device is of the order of 1 x 10(12) molecules/cm2 and is limited by the efficiency of the filtering of the excitation light. A surface density of 33.5 +/- 4.0 pmol/cm2 was measured for DNA covalently immobilized to the functionalized SiO2 thin film and a surface density of 3.7 +/- 1.5 pmol/cm2 was measured for the complementary DNA hybridized to the bound DNA. The detection concept explored can enable on-chip electronic data acquisition, improving both the speed and the reliability of DNA microarrays.
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Affiliation(s)
- F Fixe
- INESC Microsistemas e Nanotecnologias (INESC-MN), Rua Alves Redol, 9, 1000-029 Lisboa, Portugal.
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Schuldt AJT, Hampton TJ, Chu V, Vogler CA, Galvin N, Lessard MD, Barker JE. Electrocardiographic and other cardiac anomalies in beta-glucuronidase-null mice corrected by nonablative neonatal marrow transplantation. Proc Natl Acad Sci U S A 2004; 101:603-8. [PMID: 14704281 PMCID: PMC327194 DOI: 10.1073/pnas.0305284101] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2003] [Indexed: 11/18/2022] Open
Abstract
Cardiovascular manifestations of lysosomal storage disease (LSD) are a significant health problem for affected patients. Infantile-onset cardiac disease, because of its rapid progression, is usually treated symptomatically. Therapy in older patients includes valve replacement and bone marrow (BM) transplantation, both of which are life threatening in the already debilitated patients. Enzyme replacement therapy has potential benefit but has not yet been demonstrated to provide long-term relief for cardiac disease. Here, we demonstrate prevention of severe cardiac manifestations in beta-glucuronidase (GUSB) null mice BM-transplanted i.v. as neonates without myeloablative pretreatment. The mice, a model of mucopolysaccharidosis type VII (MPSVII, Sly syndrome), develop progressive LSD unless provided with GUSB early in life. The BM recipients retained GUSB+ donor cells in the peripheral blood and heart until necropsy at > or = 11 months of age. The enzyme beta-hexosamindase increased in tissues of GUSB null MPSVII mice was reduced significantly (P = 0.001) in treated MPSVII hearts. Electrocardiography demonstrated normalization of heart rate, PR, PQ, and QRS intervals in BM recipients. Storage was markedly reduced in the stroma of heart valves, adventitial cells of the aortic root, perivascular and interstitial cells of the myocardium, and interstitial cells of the conduction tissue. Heart/body weight ratio normalized. The aortic root was still grossly distended, and the conductive myocytes retained storage, suggesting neither plays a major role in ECG normalization. We conclude that transplantation of MPSVII neonates without toxic intervention can prevent many of the cardiovascular manifestations of LSD.
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Rebello SS, Kasiewski CJ, Bentley RG, Morgan SR, Chu V, Bostwick JS, Klein SI, Perrone MH, Leadley RJ. Superiority of enoxaparin over heparin in combination with a GPIIb/IIIa receptor antagonist during coronary thrombolysis in dogs. Thromb Res 2001; 102:261-71. [PMID: 11369420 DOI: 10.1016/s0049-3848(01)00242-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
It is known that a low-molecular-weight heparin (LMWH) is more effective than unfractionated heparin in unstable angina/non-Q-wave myocardial infarction (UA/NQMI) and the platelet GPIIb/IIIa receptors play an important role in acute myocardial infarction (AMI). Therefore, enoxaparin might have a similar advantage over heparin when used with a GPIIb/IIIa antagonist (RPR109891) in coronary thrombolysis. After induction of coronary thrombosis in anesthetized dogs, infusion of saline, enoxaparin, heparin, RPR109891, enoxaparin+RPR109891, or heparin+RPR109891 was initiated followed 15 min later by recombinant tissue plasminogen activator (rt-PA). The incidence of reperfusion in the enoxaparin+RPR109891- and the heparin+RPR109891-treated groups was similar, but time to reperfusion tended to be shorter for enoxaparin versus heparin. Only 43% of the vessels reoccluded in the enoxaparin+RPR109891 group, compared to 100% vessels in the heparin+RPR109891 group. Enoxaparin+RPR109891 maintained flow for a significantly longer time compared to saline, enoxaparin, heparin, and heparin+RPR109891. Enoxaparin+RPR109891 and heparin+RPR109891 increased the template bleeding time by 2- and 3-fold and activated partial thromboplastin time (APTT) by 1.3- and 3-fold, respectively. These data suggest that enoxaparin is more effective and potentially safer than heparin when combined with a GPIIb/IIIa receptor antagonist during rt-PA-induced coronary thrombolysis.
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Affiliation(s)
- S S Rebello
- Cardiovascular Biology, Aventis Pharmaceuticals, 19426, Collegeville, PA, USA.
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Chu V, Brown K, Colussi D, Gao J, Bostwick J, Kasiewski C, Bentley R, Morgan S, Guertin K, Pauls HW, Gong Y, Zulli A, Perrone MH, Dunwiddie CT, Leadley RJ. Pharmacological characterization of a novel factor Xa inhibitor, FXV673. Thromb Res 2001; 103:309-24. [PMID: 11562341 DOI: 10.1016/s0049-3848(01)00328-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
FXV673 is a novel, potent, and selective factor Xa (FXa) inhibitor. FXV673 inhibited human, dog, and rabbit FXa with a K(i) of 0.52, 1.41, and 0.27 nM, respectively. FXV673 also displayed excellent specificity toward FXa relative to other serine proteases. It showed selectivity of more than 1000-fold over thrombin, activated protein C (aPC), plasmin, and tissue-plasminogen activator (t-PA). FXV673 prolonged plasma activated partial thromboplastin time (APTT) and prothrombin time (PT) in a dose-dependent fashion. In the APTT assays, the concentrations (microM) required for doubling coagulation time were 0.41 (human), 0.65 (monkey), 1.12 (dog), 0.25 (rabbit), and 0.80 (rat). The concentrations (microM) required in the PT assays were 1.1 (human), 1.32 (monkey), 2.31 (dog), 0.92 (rabbit), and 1.69 (rat). A coupled-enzyme assay was performed to measure thrombin activity following prothrombinase conversion of prothrombin to thrombin. FXV673 showed IC(50)s of 1.38 and 2.55 nM, respectively, when artificial phosphatidylserine/phosphatidylcholine (PS/PC) liposomes or fresh platelets were used as the phospholipid source for prothrombinase complex formation. It was demonstrated that FXV673 could inhibit further thrombin generation in the prothrombinase complex using PS/PC liposomes. FXV673 dose-dependently prolonged the time to vessel occlusion and inhibited thrombus formation in well-characterized canine models of thrombosis. Interspecies extrapolation (approximately 2.5-fold higher sensitivity for FXa inhibition in human than in dog) suggested that 100 ng/ml of FXV673 would be an effective plasma concentration for clinical studies. Currently FXV673 is undergoing clinical studies to be developed as an antithrombotic agent.
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Affiliation(s)
- V Chu
- Aventis Pharmaceuticals, Mail Stop: EM-A1B, Route 202 and 206, P.O. Box 6800, Bridgewater, NJ 08807, USA.
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Rebello SS, Kasiewski CJ, Wang W, Bentley RG, Morgan SR, Chu V, Colussi D, Brown K, Perrone MH, Leadley RJ. Role of short-term inhibition of factor Xa by FXV673 in arterial passivation: a study in a chronic model of thrombosis in conscious dogs. J Cardiovasc Pharmacol 2001; 38:288-97. [PMID: 11483879 DOI: 10.1097/00005344-200108000-00015] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
Factor Xa (fXa) plays a pivotal role in the activation of the coagulation system during thrombosis, but, unlike GPIIb/IIIa receptor antagonists, the role of fXa inhibition in arterial passivation is not well defined. We compared the long-term antithrombotic efficacy of a direct fXa inhibitor, FXV673, and heparin after short-term infusion in conscious dogs. Dogs were instrumented surgically to induce carotid artery thrombosis by electrolytic injury. On day 1, dogs received a 3-h infusion of placebo (n = 10), FXV673 (100 microg/kg + 10 microg/kg/min, n = 7), or heparin (60 U/kg + 0.7 U/kg/min, n 7). Injury (100 microA) was initiated concomitantly for 1 h. The procedure was repeated on day 2 with injury of 200 microA for 3 h. Carotid artery blood flow (CBF) and coagulation parameters were monitored continuously for 3 h on days 1 and 2 and for 30 min on days 3, 4, and 5. On day 1 at 3 h, CBF in the placebo-treated group was 26% of baseline with 70% incidence of occlusion. None of the vessels occluded in the heparin and FXV673 groups; however, the CBF was significantly higher in the FXV673 group (92+/-8 ml/min versus 39+/-12 ml/min). Before injury on day 2, CBF recovered in all groups to 71-89% of baseline. After the second injury, all vessels in the placebo-treated group progressed to complete occlusion by 3 h. CBF was significantly higher in FXV673 group compared with heparin throughout the 3-h period. On days 3, 4, and 5 the placebo-treated vessels remained occluded, but the CBF in the heparin group was 33+/-20 ml/min, 55+/-11 ml/min and 68+/-12 ml/min, respectively, compared with 84+/-10 ml/min, 98+/-7 ml/min, and 99+/-10 ml/min in the FXV673 group. The arterial thrombus mass was significantly lower in FXV673 group (13+/-4 mg) compared with placebo (103+/-10 mg) and heparin (44+/-11 mg). In summary, these data demonstrate that short-term infusion of FXV673 was associated with long-term efficacy that was superior to standard heparin and underscore the role of direct fXa inhibition in arterial passivation.
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Affiliation(s)
- S S Rebello
- Aventis Pharmaceuticals, Collegeville, Pennsylvania, USA.
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Rebello SS, Bentley RG, Morgan SR, Kasiewski CJ, Chu V, Perrone MH, Leadley RJ. Antithrombotic efficacy of a novel factor Xa inhibitor, FXV673, in a canine model of coronary artery thrombolysis. Br J Pharmacol 2001; 133:1190-8. [PMID: 11487531 PMCID: PMC1572886 DOI: 10.1038/sj.bjp.0704182] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
We compared the antithrombotic efficacy of a potent factor Xa inhibitor, FXV673, to heparin and RPR109891, a GPIIb/IIIa antagonist, when used as adjunctive therapy in a canine model of rt-PA-induced coronary thrombolysis. Thrombus formation was induced by electrolytic injury to stenosed coronary artery. After thrombotic occlusion, a 135 min infusion of saline (n=8), FXV673 (10, 30 or 100 microg kg(-1)+1, 3, or 10 microg kg(-1) min(-1), respectively; n=8 per dose), heparin (60 u kg(-1)+0.7 u kg(-1) min(-1), n=8), or RPR109891 (30 microg kg(-1)+0.45 microg kg(-1) min(-1), n=8), was initiated. Aspirin (5 mg kg(-1), i.v.) was administered to all animals. Fifteen minutes after the start of drug infusion, rt-PA was administered (100 microg kg(-1)+20 microg kg(-1) min(-1) for 60 min). The incidence of reperfusion in the high dose FXV673 (8/8, 100%) was significantly greater than that in the heparin group (4/8, 50%), with a trend to faster reperfusion (23+/-5 min for FXV673 versus 41+/-11 min for heparin). Only 2/8 (25%) of the vessels reoccluded in the high dose FXV673 group, compared to 4/4 (100%) and 5/5 (100%) vessels in the heparin and RPR109891 groups, respectively (P<0.05). Throughout the protocol, blood flow was higher in the FXV673 treated group compared to other groups. FXV673 enhanced vessel patency in a dose-dependent manner. Compared to vehicle and heparin groups, the thrombus mass was decreased by 60% in the high dose FXV673. FXV673, heparin and RPR109891 increased the bleeding time by 2.7, 1.7 and 4 fold, and APTT by 2.8, 2.7 and 1.2 fold, respectively. In conclusion, FXV673 is more effective than heparin and at least as effective as RPR109891 when used as an adjunct during rt-PA-induced coronary thrombolysis.
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Affiliation(s)
- S S Rebello
- Cardiovascular Biology, Aventis Pharmaceuticals, Collegeville, Pennsylvania, U.S.A.
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Abstract
Nonbenzamidine compounds (imidazole, pyridine, pyrimidine, and thiazole derivatives) as selective serine protease factor Xa inhibitors are discussed.
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Affiliation(s)
- W He
- Department of Medicinal Chemistry, Aventis Pharmaceuticals, Collegeville, PA 19426, USA.
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Chu V, Brown K, Colussi D, Choi YM, Green D, Pauls HW, Spada AP, Perrone MH, Leadley RJ, Dunwiddie CT. In vitro characterization of a novel factor Xa inhibitor, RPR 130737. Thromb Res 2000; 99:71-82. [PMID: 11012377 DOI: 10.1016/s0049-3848(00)00227-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
RPR 130737 inhibited factor Xa (FXa) with a Ki of 2.4 nM and also displayed excellent specificity toward FXa relative to other serine proteases. It showed selectivity of more than 1000-fold over thrombin, activated protein C, plasmin, tissue-plasminogen activator and trypsin. RPR 130737 prolonged plasma activated partial thromboplastin time and prothrombin time in a dose-dependent fashion. In the activated partial thromboplastin time assay, the concentrations required for doubling coagulation time were 0.32 microM (human), 0.61 microM (monkey), 0.44 microM (dog), 0.15 microM (rabbit), and 0.82 microM (rat). The concentrations required to double prothrombin time were 0.86 microM (human), and 1.26 microM (monkey), 1.15 microM (dog), 0.39 microM (rabbit) and 7.31 microM (rat). Kinetic studies revealed that RPR 130737 was a fast binding, reversible and competitive inhibitor for FXa when Spectrozyme FXa, a chromogenic substrate, was used. A coupled-enzyme assay measuring thrombin activity following prothrombinase conversion of prothrombin to thrombin indicated that RPR 130737 was a potent inhibitor for prothrombinase-bound FXa. In this assay, RPR 130737 showed IC50s of 17 nM and 35.9 nM, respectively when artificial phosphatidylserine/phosphatidylcholine (PS/PC) liposomes or gel-filtered platelets were used as the phospholipid source. An FX-deficient plasma clotting-time correction assay further demonstrated that RPR 130737 was a specific inhibitor of FXa. RPR 130737 showed no effect on platelet aggregation in vitro. These results indicate that RPR 130737 has the potential to be developed as an antithrombotic agent based on its potent and selective inhibitory effect against FXa.
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Affiliation(s)
- V Chu
- Cardiovascular Drug Discovery, Rhône-Poulenc Rorer Central Research, Collegeville, PA, USA.
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