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Single-cell classification, analysis, and its application using deep learning techniques. Biosystems 2024; 237:105142. [PMID: 38340976 DOI: 10.1016/j.biosystems.2024.105142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Revised: 02/07/2024] [Accepted: 02/07/2024] [Indexed: 02/12/2024]
Abstract
Single-cell analysis (SCA) improves the detection of cancer, the immune system, and chronic diseases from complicated biological processes. SCA techniques generate high-dimensional, innovative, and complex data, making traditional analysis difficult and impractical. In the different cell types, conventional cell sequencing methods have signal transformation and disease detection limitations. To overcome these challenges, various deep learning techniques (DL) have outperformed standard state-of-the-art computer algorithms in SCA techniques. This review discusses DL application in SCA and presents a detailed study on improving SCA data processing and analysis. Firstly, we introduced fundamental concepts and critical points of cell analysis techniques, which illustrate the application of SCA. Secondly, various effective DL strategies apply to SCA to analyze data and provide significant results from complex data sources. Finally, we explored DL as a future direction in SCA and highlighted new challenges and opportunities for the rapidly evolving field of single-cell omics.
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Aptamer-functionalized MOFs and AI-driven strategies for early cancer diagnosis and therapeutics. Biotechnol Lett 2024; 46:1-17. [PMID: 38155321 DOI: 10.1007/s10529-023-03454-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 11/07/2023] [Accepted: 11/20/2023] [Indexed: 12/30/2023]
Abstract
Metal-Organic Frameworks (MOFs) have exceptional inherent properties that make them highly suitable for diverse applications, such as catalysis, storage, optics, chemo sensing, and biomedical science and technology. Over the past decades, researchers have utilized various techniques, including solvothermal, hydrothermal, mechanochemical, electrochemical, and ultrasonic, to synthesize MOFs with tailored properties. Post-synthetic modification of linkers, nodal components, and crystallite domain size and morphology can functionalize MOFs to improve their aptamer applications. Advancements in AI and machine learning led to the development of nonporous MOFs and nanoscale MOFs for medical purposes. MOFs have exhibited promise in cancer therapy, with the successful accumulation of a photosensitizer in cancer cells representing a significant breakthrough. This perspective is focused on MOFs' use as advanced materials and systems for cancer therapy, exploring the challenging aspects and promising features of MOF-based cancer diagnosis and treatment. The paper concludes by emphasizing the potential of MOFs as a transformative technology for cancer treatment and diagnosis.
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Sweat analysis for urea sensing: trends and challenges. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2023; 15:4405-4426. [PMID: 37646163 DOI: 10.1039/d3ay01089a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
With increasing population there is a rise in pathological diseases that the healthcare facilities are grappling with. Sweat-based wearable technologies for continuous monitoring have overcome the demerits associated with sweat sampling and sensing. Hence, sweat as an alternative biofluid holds great promise for the quantification of a host of biomarkers and understanding the functioning of the body, thereby deducing ailments quickly and economically. This comprehensive review accounts for recent advances in sweat-based LOCs (Lab-On-Chips), which are a likely alternative to the existing blood-urea sample testing that is invasive and time-consuming. The present review is focused on the advancements in sweat-based Lab-On-Chips (LOCs) as an alternative to invasive and time-consuming blood-urea sample testing. In addition, different sweat collection methods (direct skin, near skin and microfluidic) and their mechanism for urea sensing are explained in detail. The mechanism of urea in biofluids in protein metabolism, balancing nitrogen levels and a crucial factor of kidney function is described. In the end, research and technological advancements are explained to address current challenges and enable its widespread implementation.
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Aptamer-based rapid diagnosis for point-of-care application. MICROFLUIDICS AND NANOFLUIDICS 2023; 27:15. [PMID: 36688097 PMCID: PMC9847464 DOI: 10.1007/s10404-022-02622-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 12/31/2022] [Indexed: 05/31/2023]
Abstract
Aptasensors have attracted considerable interest and widespread application in point-of-care testing worldwide. One of the biggest challenges of a point-of-care (POC) is the reduction of treatment time compared to central facilities that diagnose and monitor the applications. Over the past decades, biosensors have been introduced that offer more reliable, cost-effective, and accurate detection methods. Aptamer-based biosensors have unprecedented advantages over biosensors that use natural receptors such as antibodies and enzymes. In the current epidemic, point-of-care testing (POCT) is advantageous because it is easy to use, more accessible, faster to detect, and has high accuracy and sensitivity, reducing the burden of testing on healthcare systems. POCT is beneficial for daily epidemic control as well as early detection and treatment. This review provides detailed information on the various design strategies and virus detection methods using aptamer-based sensors. In addition, we discussed the importance of different aptamers and their detection principles. Aptasensors with higher sensitivity, specificity, and flexibility are critically discussed to establish simple, cost-effective, and rapid detection methods. POC-based aptasensors' diagnostic applications are classified and summarised based on infectious and infectious diseases. Finally, the design factors to be considered are outlined to meet the future of rapid POC-based sensors.
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Sweat gland morphology and physiology in diabetes, neuropathy, and nephropathy: a review. Arch Physiol Biochem 2022:1-15. [PMID: 36063413 DOI: 10.1080/13813455.2022.2114499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Accepted: 08/02/2022] [Indexed: 11/02/2022]
Abstract
Context: Sweat glands (SGs) play a vital role in thermal regulation. The function and structure are altered during the different pathological conditions.Objective: These alterations are studied through three techniques: biopsy, sweat analytes and electrical activity of SG.Methods: The morphological study of SG through biopsy and various techniques involved in quantifying sweat analytes is focussed on here. Electrical activities of SG in diabetes, neuropathy and nephropathy cases are also discussed, highlighting their limitations and future scope.Results and Conclusion: The result of this review identified three areas of the knowledge gap. The first is wearable sensors to correlate pathological conditions. Secondly, there is no device to look for its structure and quantify its associated function. Finally, therapeutic applications of SG are explored, especially for renal failure. With these aspects, this paper provides information collection and correlates SG with pathologies related to diabetes. Hence this could help researchers develop suitable technologies for the gaps identified.
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Response of a Thin Flat Scored Metallic Disc Under Pressure Impulse. DEFENCE SCI J 2022. [DOI: 10.14429/dsj.72.17755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
This paper presents the large deformation, and failure response of a thin flat scored metallic disc (FSMD) subjected to a pressure impulse as experienced in a break-away disc or an explosion vent. The response of this thin FSMD is numerically simulated for a loading rate and validated with an experiment, where a good agreement is found on plastic strains, burst pressure, and deformation pattern. The loading rate and several geometric parameters of FSMD significantly influence its response. Therefore, the influence of loading rate ( P& ), score depth and width-todisc thickness ratio (t 1 /t and b/t), diameter-to-disc thickness ratio (D/t), score length-to-disc radius ratio (l/R), score pattern, and score geometry on the deformation and failure response of the thin FSMD is thoroughly investigated. The studies demonstrate that 1) the failure initiation point shifts from disc centre to between 1/5th and 1/3rd radius for loading rates ≤ 25 MPa/s; 2) the responses such as burst pressure, burst time, central deflection, and equivalent strain are i) sensitive to the loading rates up to 100 MPa/s, ii) sensitive to score’s depth, only up to 0.6t and insensitive to score’s width, iii) significantly unaffected for the number of scores N > 8, iv) stabilised for l/R > 0.5 and D/t > 250, v) almost the same for semi-circular, rectangular and triangular score geometries, and vi) very minimal for the number of scores N = 3; and 3) the failure do not initiate and propagate along all scores for N > 4 in the disc.
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Microheater: material, design, fabrication, temperature control, and applications-a role in COVID-19. Biomed Microdevices 2021; 24:3. [PMID: 34860299 PMCID: PMC8641292 DOI: 10.1007/s10544-021-00595-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/29/2021] [Indexed: 11/28/2022]
Abstract
Heating plays a vital role in science, engineering, mining, and space, where heating can be achieved via electrical, induction, infrared, or microwave radiation. For fast switching and continuous applications, hotplate or Peltier elements can be employed. However, due to bulkiness, they are ineffective for portable applications or operation at remote locations. Miniaturization of heaters reduces power consumption and bulkiness, enhances the thermal response, and integrates with several sensors or microfluidic chips. The microheater has a thickness of ~ 100 nm to ~ 100 μm and offers a temperature range up to 1900℃ with precise control. In recent years, due to the escalating demand for flexible electronics, thin-film microheaters have emerged as an imperative research area. This review provides an overview of recent advancements in microheater as well as analyses different microheater designs, materials, fabrication, and temperature control. In addition, the applications of microheaters in gas sensing, biological, and electrical and mechanical sectors are emphasized. Moreover, the maximum temperature, voltage, power consumption, response time, and heating rate of each microheater are tabulated. Finally, we addressed the specific key considerations for designing and fabricating a microheater as well as the importance of microheater integration in COVID-19 diagnostic kits. This review thereby provides general guidelines to researchers to integrate microheater in micro-electromechanical systems (MEMS), which may pave the way for developing rapid and large-scale SARS-CoV-2 diagnostic kits in resource-constrained clinical or home-based environments.
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Abstract
The technique of harvesting the energy from base structural vibration through a piezoelectric transducer attached at an appropriate location on the vibrating structure is gaining popularity in recent years. Although the amount of energy harvested depends on the type and magnitude of base excitation, the energy harvest under random excitation as compared to equivalent harmonic excitations is not yet well understood and is investigated in this paper through a cantilever energy harvester. Initially, the energy harvested under harmonic excitations is numerically simulated and experimentally validated under increasing base accelerations with different load resistances. Subsequently, the performance of this energy harvester is experimentally studied under random excitations. The results demonstrate that the harvested energy (a) reaches maximum value when the base excitation matches the natural frequency of the harvester, (b) increases with the increase in base accelerations irrespective of the type of excitation, and (c) increases by 2-14 times under random excitations as compared to equivalent harmonic excitations i.e. under same energy input. It is recommended that the energy harvester be used in aerospace structures where random vibration amplitude is higher, to harvest more energy.
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Hepatitis C virus (HCV) diagnosis via microfluidics. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2021; 13:740-763. [PMID: 33511975 DOI: 10.1039/d0ay02045a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Humans are subjected to various diseases; hence, proper diagnosis helps avoid further disease consequences. One such severe issue that could cause significant damage to the human liver is the hepatitis C virus (HCV). Several techniques are available to detect HCV under various categories, such as detection through antibodies, antigens, and RNA. Although immunoassays play a significant role in discovering hepatitis viruses, there is a need for point-of-care tests (POCT). Some developing strategies are required to ensure the appropriate selection of POCT for HCV detection, initiate appropriate antiviral therapy, and define associated risks, which will be critical in achieving optimal outcomes. Though molecular assays are precise, reproducible, sensitive, and specific, alternative strategies are required to enhance HCV diagnosis among the infected population. Herein, we described and assessed the potential of various microfluidic detection techniques and confirmatory approaches used in present communities. In addition, current key market players in HCV chip-based diagnosis and the future perspectives on the basis of which the diagnosis can be made easier are presented in the present review.
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Abstract
Crush tubes are used as crash impact energy absorbing structure (EAS) and are located in the frontal compartment of road vehicles. Ideal crashworthiness of an EAS mandates that the equivalent decelerations due to impact forces should to be ≤ 20g; and crush force and stroke efficiencies should tend to unity. It is understood from the literature that no single geometric cross-section shape exhibits a near-ideal crashworthiness; and most EAS members exhibit a high initial peak crush force which is detrimental to the occupant safety, and moderate stroke and crush force efficiencies leading to a compromise in the total energy absorbed. In this paper, finite element analysis (FEA) methodology is formulated and experimentally validated for axial crush of a crush tube of SS304 material with circular cross section. Subsequently, plastic deformation phenomenon and folding patterns in relation to crush force behaviour of crush tubes with various basic cross-sections of polygonal geometric shapes from triangle to octagon and circle are extensively studied through FEA. Further, two new geometric cross-section profiles with combination of basic shapes are proposed to combine the merits of different basic shapes. The crashworthiness of all basic cross-sections including the two proposed cross-section profiles is assessed based on standard parameters. The proposed new geometries may form a basis for the development of new EAS configurations for enhanced crashworthiness.
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Advances in passively driven microfluidics and lab-on-chip devices: a comprehensive literature review and patent analysis. RSC Adv 2020; 10:11652-11680. [PMID: 35496619 PMCID: PMC9050787 DOI: 10.1039/d0ra00263a] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 02/20/2020] [Indexed: 12/15/2022] Open
Abstract
The development of passively driven microfluidic labs on chips has been increasing over the years. In the passive approach, the microfluids are usually driven and operated without any external actuators, fields, or power sources. Passive microfluidic techniques adopt osmosis, capillary action, surface tension, pressure, gravity-driven flow, hydrostatic flow, and vacuums to achieve fluid flow. There is a great need to explore labs on chips that are rapid, compact, portable, and easy to use. The evolution of these techniques is essential to meet current needs. Researchers have highlighted the vast potential in the field that needs to be explored to develop rapid passive labs on chips to suit market/researcher demands. A comprehensive review, along with patent analysis, is presented here, listing the latest advances in passive microfluidic techniques, along with the related mechanisms and applications. Different approaches employed in the passively driven microfluidics and LOC devices.![]()
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Direct cell imprint lithography in superconductive carbon black polymer composites: process optimization, characterization and in vitro toxicity analysis. BIOINSPIRATION & BIOMIMETICS 2019; 15:016002. [PMID: 30897554 DOI: 10.1088/1748-3190/ab1243] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Cell imprint lithography (CIL) or cell replication plays a vital role in fields like biomimetic smart culture substrates, bone tissue engineering, cell guiding, cell adhesion, tissue engineering, cell microenvironments, tissue microenvironments, cell research, drug delivery, diagnostics, therapeutics and many other applications. Herein we report a new formulation of superconductive carbon black photopolymer composite and its characterization towards a CIL process technique. In this article, we demonstrated an approach of using a carbon nanoparticle-polymer composite (CPC) for patterning cells. It is observed that a 0.3 wt % load of carbon nanoparticles (CNPs) in a carbon polymer mixture (CPM) was optimal for cell-imprint replica fabrication. The electrical resistance of the 3-CPC (0.3 wt %) was reduced by 68% when compared to N-CPC (0 wt %). This method successfully replicated the single cell with sub-organelle scale. The shape of microvesicles, grooves, pores, blebs or microvilli on the cellular surface was patterned clearly. This technique delivers a free-standing cell feature substrate. In vitro evaluation of the polymer demonstrated it as an ideal candidate for biomimetic biomaterial applications. This approach also finds its application in study based on morphology, especially for drug delivery applications and for investigations based on molecular pathways.
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Skin cancer detection using non-invasive techniques. RSC Adv 2018; 8:28095-28130. [PMID: 35542700 PMCID: PMC9084287 DOI: 10.1039/c8ra04164d] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 07/22/2018] [Indexed: 12/22/2022] Open
Abstract
Skin cancer is the most common form of cancer and is globally rising. Historically, the diagnosis of skin cancers has depended on various conventional techniques which are of an invasive manner. A variety of commercial diagnostic tools and auxiliary techniques are available to detect skin cancer. This article explains in detail the principles and approaches involved for non-invasive skin cancer diagnostic methods such as photography, dermoscopy, sonography, confocal microscopy, Raman spectroscopy, fluorescence spectroscopy, terahertz spectroscopy, optical coherence tomography, the multispectral imaging technique, thermography, electrical bio-impedance, tape stripping and computer-aided analysis. The characteristics of an ideal screening test are outlined, and the authors pose several points for clinicians and scientists to consider in the evaluation of current and future studies of skin cancer detection and diagnosis. This comprehensive review critically analyses the literature associated with the field and summarises the recent updates along with their merits and demerits.
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