A Retrospective Analysis of Indoor CO2 Measurements Obtained with a Mobile Robot during the COVID-19 Pandemic

This work presents a retrospective analysis of indoor CO2 measurements obtained with a mobile robot in an educational building after the COVID-19 lockdown (May 2021), at a time when public activities resumed with mandatory local pandemic restrictions. The robot-based CO2 measurement system was assessed as an alternative to the deployment of a net of sensors in a building in the pandemic period, in which there was a global stock outage of CO2 sensors. The analysis of the obtained measurements confirms that a mobile system can be used to obtain interpretable information on the CO2 levels inside the rooms of a building during a pandemic outbreak.

Dollo Parsimony Overestimates Ancestral Gene Content Reconstructions

Ancestral reconstruction is a widely used technique that has been applied to understand the evolutionary history of gain and loss of gene families. Ancestral gene content can be reconstructed via different phylogenetic methods, but many current and previous studies employ Dollo parsimony. We hypothesize that Dollo parsimony is not appropriate for ancestral gene content reconstruction inferences based on sequence homology, as Dollo parsimony is derived from the assumption that a complex character cannot be regained. This premise does not accurately model molecular sequence evolution, in which false orthology can result from sequence convergence or lateral gene transfer. The aim of this study is to test Dollo parsimony's suitability for ancestral gene content reconstruction and to compare its inferences with a maximum likelihood-based approach that allows a gene family to be gained more than once within a tree. We first compared the performance of the two approaches on a series of artificial data sets each of 5,000 genes that were simulated according to a spectrum of evolutionary rates without gene gain or loss, so that inferred deviations from the true gene count would arise only from errors in orthology inference and ancestral reconstruction. Next, we reconstructed protein domain evolution on a phylogeny representing known eukaryotic diversity. We observed that Dollo parsimony produced numerous ancestral gene content overestimations, especially at nodes closer to the root of the tree. These observations led us to the conclusion that, confirming our hypothesis, Dollo parsimony is not an appropriate method for ancestral reconstruction studies based on sequence homology.

The opposed forces of differentiation and admixture across glacial cycles in the butterfly Aglais urticae

Glacial cycles lead to periodic population interbreeding and isolation in warm-adapted species, which impact genetic structure and evolution. However, the effects of these processes on highly mobile and more cold-tolerant species are not well understood. This study aims to shed light on the phylogeographic history of Aglais urticae, a butterfly species with considerable dispersal ability, and a wide Palearctic distribution reaching the Arctic. Through the analysis of genomic data, four main genetic lineages are identified: European, Sierra Nevada, Sicily/Calabria/Peloponnese, and Eastern. The results indicate that the Sardo-Corsican endemic taxon ichnusa is a distinct species. The split between the relict lineages in southern Europe and the main European lineage is estimated to have happened 400-450 thousand years ago, with admixture observed during the Quaternary glacial cycles, and still ongoing, albeit to a much smaller extent. These results suggest that these lineages may be better treated as subspecific parapatric taxa. Ecological niche modelling supported the existence of both Mediterranean and extra-Mediterranean refugia during the glacial periods, with the main one located on the Atlantic coast. Nevertheless, gene flow between populations was possible, indicating that both differentiation and admixture have acted continuously across glacial cycles in this cold-tolerant butterfly, generally balancing each other but producing differentiated lineages in the southern peninsulas. We conclude that the population dynamics and the processes shaping the population genetic structure of cold-adapted species during the Quaternary ice ages may be different than those classically accepted for warm-adapted species.

Survivin/BIRC5 as a novel molecular effector at the crossroads of glucose metabolism and radioresistance in head and neck squamous cell carcinoma

BACKGROUND

Metabolic reprogramming and abnormal glucose metabolism are hallmarks of head and neck squamous cell carcinoma (HNSCC). Certain oncogenes can promote cancer-related metabolic changes, but understanding their crosstalk in HNSCC biology and treatment is essential for identifying predictive biomarkers and developing target therapies.

METHODS

We assessed the value of survivin/BIRC5 as a radioresistance factor potentially modulated by glucose for predicting therapeutic sensitivity and prognosis of HNSCC in a cohort of 32 patients. Additionally, we conducted in vitro experiments to explore the role of survivin/BIRC5 in glucose metabolism concerning radiation response.

RESULTS

Tumoral BIRC5 expression is associated with serum glucose and predicts locoregional disease-free survival and lower BIRC5 mRNA levels are associated with better outcomes. Upregulation of BIRC5 by radiation depends on glucose levels and provokes a pro-tumoral and radioresistant phenotype in surviving cells.

CONCLUSIONS

Survivin/BIRC5 might be independently associated with the risk of recurrence in patients with HNSCC.

Path Planning of a Mobile Delivery Robot Operating in a Multi-Story Building Based on a Predefined Navigation Tree

Planning the path of a mobile robot that must transport and deliver small packages inside a multi-story building is a problem that requires a combination of spatial and operational information, such as the location of origin and destination points and how to interact with elevators. This paper presents a solution to this problem, which has been formulated under the following assumptions: (1) the map of the building's floors is available; (2) the position of all origin and destination points is known; (3) the mobile robot has sensors to self-localize on the floors; (4) the building is equipped with remotely controlled elevators; and (5) all doors expected in a delivery route will be open. We start by defining a static navigation tree describing the weighted paths in a multi-story building. We then proceed to describe how this navigation tree can be used to plan the route of a mobile robot and estimate the total length of any delivery route using Dijkstra's algorithm. Finally, we show simulated routing results that demonstrate the effectiveness of this proposal when applied to an autonomous delivery robot operating in a multi-story building.

CAAStools: a toolbox to identify and test Convergent Amino Acid Substitutions

MOTIVATION

Coincidence of Convergent Amino Acid Substitutions (CAAS) with phenotypic convergences allow pinpointing genes and even individual mutations that are likely to be associated with trait variation within their phylogenetic context. Such findings can provide useful insights into the genetic architecture of complex phenotypes.

RESULTS

Here we introduce CAAStools, a set of bioinformatics tools to identify and validate CAAS in orthologous protein alignments for predefined groups of species representing the phenotypic values targeted by the user.

AVAILABILITY AND IMPLEMENTATION

CAAStools source code is available at http://github.com/linudz/caastools, along with documentation and examples.

Virtual embodiment for improving range of motion in patients with movement-related shoulder pain: an experimental study

BACKGROUND

Recent evidence supports the use of immersive virtual reality (VR) as a means of delivering bodily illusions that may have therapeutic potential for the treatment of musculoskeletal conditions. We wanted to investigate whether a single session of an embodiment-based immersive VR training program influences pain-free range of motion in patients with shoulder pain.

METHODS

We designed a rehabilitation program based on developing ownership over a virtual body and then "exercising" the upper limb in immersive VR, while the real arm remains static. We then carried out a single-arm pre-post experiment in which 21 patients with movement-related musculoskeletal shoulder pain were exposed to the 15-min VR program and measured their active pain-free range of motion immediately before and afterwards.

RESULTS

We found that shoulder abduction and hand-behind-back movements, but not shoulder flexion, were significantly and clinically improved post-intervention and that the level of improvement correlated with the level of embodiment. Following this one session, at 1-week follow-up the improvements were not maintained.

CONCLUSIONS

Virtual embodiment may be a useful therapeutic tool to help improve range of motion in patients with movement-related shoulder pain in the short term, which in turn could expedite rehabilitation and recovery in these conditions.

Elastocaloric Waste/Natural Rubber Materials with Various Crosslink Densities

The characterization of the mechanical behavior of elastocaloric materials is essential to identify their viability in heating/cooling devices. Natural rubber (NR) is a promising elastocaloric (eC) polymer as it requires low external stress to induce a wide temperature span, ΔT. Nonetheless, solutions are needed to further improve DT, especially when targeting cooling applications. To this aim, we designed NR-based materials and optimized the specimen thickness, the density of their chemical crosslinks, and the quantity of ground tire rubber (GTR) used as reinforcing fillers. The eC properties under a single and cyclic loading conditions of the resulting vulcanized rubber composites were investigated via the measure of the heat exchange at the specimen surface using infrared thermography. The highest eC performance was found with the specimen geometry with the lowest thickness (0.6 mm) and a GTR content of 30 wt.%. The maximum temperature span under single interrupted cycle and multiple continuous cycles were equal to 12 °C and 4 °C, respectively. These results were assumed to be related to more homogeneous curing in these materials and to a higher crosslink density and GTR content which both act as nucleating elements for the strain-induced crystallization at the origin of the eC effect. This investigation would be of interest for the design of eC rubber-based composites in eco-friendly heating/cooling devices.

NanoFN10: A High-Contrast Turn-On Fluorescence Nanoprobe for Multiphoton Singlet Oxygen Imaging

An "off-on" fluorescent nanoprobe for near-infrared multiphoton imaging of singlet oxygen has been developed. The nanoprobe comprises a naphthoxazole fluorescent unit and a singlet-oxygen-sensitive furan derivative attached to the surface of mesoporous silica nanoparticles. In solution, the fluorescence of the nanoprobe increases upon reaction with singlet oxygen both under one- and multiphoton excitation, with fluorescence enhancements up to 180-fold. The nanoprobe can be readily internalized by macrophage cells and is capable of imaging intracellular singlet oxygen under multiphoton excitation.