Bacterial transport mediated by micro-nanobubbles in porous media

Determining the role of micro-nanobubbles (MNBs) in controlling the risk posed by pathogens to soil and groundwater during reclaimed water irrigation requires clarification of the mechanism of how MNBs block pathogenic bacteria. In this study, real-time bioluminescence imaging was used to investigate the effects of MNBs on the transport and spatiotemporal distribution of bioluminescent Escherichia coli 652T7 strain in porous media. The presence of MNBs significantly increased the retention of bacteria in the porous media, decreasing the maximum relative effluent concentration (C/C0) by 78 % from 0.97 (without MNBs) to 0.21 (with MNBs). The results suggested that MNBs provided additional sites at the air-water interface (AWI) for bacterial attachment and acted as physical obstacles to reduce bacterial passage. These effects varied with environmental conditions such as solution ionic strength and pore water velocity. The results indicated that MNBs enhanced electrostatic attachment of bacteria at the AWI and their mechanical straining in pores. This study suggests that adding MNBs in pathogen-containing water is an effective measure for increasing filtration efficiency and reducing the risk of pathogenic contamination during agricultural irrigation.

Tellurite and Selenite: how can these two oxyanions be chemically different yet so similar in the way they are transformed to their metal forms by bacteria?

This opinion review explores the microbiology of tellurite, TeO₃²⁻ and selenite, SeO₃²⁻ oxyanions, two similar Group 16 chalcogen elements, but with slightly different physicochemical properties that lead to intriguing biological differences. Selenium, Se, is a required trace element compared to tellurium, Te, which is not. Here, the challenges around understanding the uptake transport mechanisms of these anions, as reflected in the model organisms used by different groups, are described. This leads to a discussion around how these oxyanions are subsequently reduced to nanomaterials, which mechanistically, has controversies between ideas around the molecule chemistry, chemical reactions involving reduced glutathione and reactive oxygen species (ROS) production along with the bioenergetics at the membrane versus the cytoplasm. Of particular interest is the linkage of glutathione and thioredoxin chemistry from the cytoplasm through the membrane electron transport chain (ETC) system/quinones to the periplasm. Throughout the opinion review we identify open and unanswered questions about the microbial physiology under selenite and tellurite exposure. Thus, demonstrating how far we have come, yet the exciting research directions that are still possible. The review is written in a conversational manner from three long-term researchers in the field, through which to play homage to the late Professor Claudio Vásquez.

A novel optical biosensor for in situ and small-scale monitoring of bacterial transport in saturated columns

In situ monitoring techniques can provide new insight into bacterial transport after inoculating exogenous bacteria into contaminated soils for bioremediation. A real-time and non-destructive optical sensor (the optrode) was employed to monitor in situ transport of two fluorescently labelled bacteria - Green Fluorescent Protein (Gfp)-labelled, hydrophilic Pseudomonas putida and Tomato Fluorescent Protein (td)-labelled, hydrophobic Rhodococcus erythropolis, in a saturated sand column with and without rhamnolipid surfactant. In situ measurements were made at three sampling ports in the column with the optrode in two sets of column experiments. In Experiment 1, liquid samples were extracted for ex situ analyses (plate counts and fluorescence), while in Experiment 2 no liquid samples were extracted. Extracting liquid samples for ex situ analyses in Experiment 1 disturbed in situ measurements; in situ measured bacterial concentrations were lower, or a significant lag in breakthrough occurred relative to ex situ measurements. In Experiment 2, the optrode worked well in monitoring bacterial transport, which gave consistent transport parameters at each sampling port. Moreover, the optrode enabled the impact of bacterial hydrophobicity and rhamnolipid surfactant on bacterial transport to be observed. Specifically, hydrophilic P. putida was transported faster through the column than hydrophobic R. erythropolis; we infer from this result that fewer P. putida cells adsorb to sand particles than do R. erythropolis cells. The rhamnolipid surfactant enhanced the transport of both hydrophilic and hydrophobic bacteria. These two observations are consistent with Lifshitz-van der Waals forces and acid-base interactions between bacteria and sand.

Extracellular polymeric substances induced cell-surface interactions facilitate bacteria transport in saturated porous media

Bacteria often respond to dynamic soil environment through the secretion of extracellular polymeric substances (EPS). The EPS modifies cell surface properties and soil pore-scale hydration status, which in turn, influences bacteria transport in soil. However, the effect of soil particle size and EPS-mediated surface properties on bacterial transport in the soil is not well understood. In this study, the simultaneous impacts of EPS and collector size on Escherichia coli (E. coli) transport and deposition in a sand column were investigated. E. coli transport experiments were carried out under steady-state flow in saturated columns packed with quartz sand with different size ranges, including 0.300-0.425 mm (sand-I), 0.212-0.300 mm (sand-II), 0.106-0.150 mm (sand-III) and 0.075-0.106 mm (sand-IV). Bacterial retention increased with decreasing sand collector size, suggesting that straining played an important role in fine-textured media. Both experiment and simulation results showed a clear drop in the retention rate of the bacterial population with the presence of additional EPS (200 mg L-1) (EPS+). The inhibited retention of cells in sand columns under EPS+ scenario was likely attributed to enhanced bacteria hydrophilicity and electrostatic repulsion between cells and sand particles as well as reduced straining. Calculations of the extended Derjaguin-Landau-Verwey-Overbeek (XDLVO) interactions energies revealed that high repulsive energy barrier existed between bacterial cells and sand particles in EPS+ environment, primarily due to high repulsive electrostatic force and Lewis acid-base force, as well as low attractive Lifshitz-van der Waals force, which retarded bacterial population deposition. Steric stabilization of EPS would also prevent the approaching of cells close to the quartz surface and thereby hinder cell attachment. This study was the first to show that EPS reduced bacterial straining in saturated porous media. These findings provide new insight into the functional effects of extrinsic EPS on bacterial transport behavior in the saturated soil environment, e.g., aquifers.

Visualization study on aniline-degrading bacteria AN-1 transport in the aquifer with the low-permeability lens

The geological conditions of the contaminated sites will affect the migration of microorganisms in the underground environment. In order to study the effect of low-permeability lens on bacterial transport, green fluorescent protein labeling combined with light transmission method was used to reveal the bacterial transport in the heterogeneous aquifer. The experiment has the advantages of real-time monitoring and no disturbance. The results showed that the bacteria gave priority to bypass the lens to flow away. The lens had a significant effect on hindering the bacterial transport due to adsorption and straining. The larger permeability coefficient ratio between the bulk media and the low-permeability lens was, the more obvious the obstruction was. AN-1 cannot enter the lens until the ratio decreased to the order of 10². With the increase of the flow velocity, the bacterial plume changed a lot. The higher flow velocity reduced the adsorption and retention of AN-1 to the media, resulting in some microorganisms remaining in the pores washed down. When the flow came to 2.0 m·d^-1, AN-1 cannot adhere to the media due to the excessive fluid shear stress.

Impacts of stratigraphic heterogeneity and release pathway on the transport of bacterial cells in porous media

In order to manage and control the pathogen release from waste streams of various municipal, industrial, and agricultural pollution sources, it is crucial to investigate the impact of release pathways of such contaminants on their fate and transport in groundwater, especially in respect to natural heterogeneities encountered in aquifers. In this laboratory scale study, we investigate the impacts of different release scenarios of Escherichia coli bacteria, including spatially distributed surface recharge and single-point deep injection, as well as mono-pulse and continuous injection on the transport of Escherichia coli within both single-layered and multilayer aquifers. The results demonstrate earlier arrival of bacteria breakthrough curve (BTC) than conservative solute within a single-layer system with textural and continuum scale heterogeneities, attributed to size exclusion mechanism and preferential flow paths. Size exclusion may be responsible for multiple peaked BTCs observed in all cases of mono-pulse injection of bacteria through both single layer and multi-layer systems. The higher breakthrough of bacteria suspension introduced through a distributed source compared to the point source injection at the same flow rate (19% and 53% in middle and top layers, respectively) suggests that natural hydrologic events such as storm may be more influential in the transport of pathogens in soils than point injections of bacteria in engineering applications such as bioremediation. Moreover, our results reveal that the concentration of the semi-steady state breakthrough formed under distributed and continuous injection condition increases significantly with an increase in the recharge flow rate. This would suggest that a variation in hydrologic conditions can significantly mobilize pathogens which are already deposited in soils.

Bioluminescent Imaging and Tracking of Bacterial Transport in Soils

Bioimaging instrumentation can be used to observe environmental phenomena such as the transport, retention, and distribution of bacteria in soils in situ in a real-time, nondestructive manner. Bacteria designed to emit bioluminescence light signals are injected into a transparent column packed with soils, and then the column is placed into a bioimaging instrument, such as a PerkinElmer IVIS Spectrum, while it is connected through thin teflon tubes to other parts of the column system located outside of the imaging chamber, including a fraction collector for collecting effluent solution and a pump for introducing bacterial suspension or experimental solution. After self-correction of soil autofluorescence and bioluminescence and setup of required imaging parameters, the transport experiment is initiated by introducing the bacterial suspension to the soil column while the spatiotemporal distribution of bioluminescent bacteria in the entire soil column is imaged. Finally, the images are processed to analyze bacterial migration in the soil under various environmental conditions in comparison with the breakthrough and elution curves of the bacteria obtained by analyzing the effluent samples.

Enhancing bacterial transport with saponins in saturated porous media for the bioaugmentation of groundwater: visual investigation and surface interactions

The success of bioaugmentation processes for the remediation of groundwater contamination relies on effective transport of the injected microorganisms in a subsurface environment. Biosurfactants potentially affect bacterial attachment and transport behavior in porous media. Although saponins as biosurfactants are abundant in nature, their influence on bacterial transport in groundwater systems remains unknown. In this research, tank visual-transport experiments, breakthrough curve monitoring, and surface property measurement were performed to evaluate the effects of saponins on the transport of Pseudomonas migulae AN-1 cells, which were used as a model bacterium in saturated sand. Results show that the 0.1% saponins could effectively facilitated the AN-1 secondary transport and the addition of saponins decreased the hydrophobicity of AN-1 and sand. The role of the promotion of saponins was more dominant than that of the inhibition of ions on AN-1 transport in a saturated porous medium when ions and saponins coexisted. The interactions between AN-1 and sand grains with saponins and ions were explained in accordance with the Derjaguin-Landau-Verwey-Overbeek theory.

Microbial transport into groundwater from irrigation: Comparison of two irrigation practices in New Zealand

Rising demand on food is leading to an increase in irrigation worldwide to improve productivity. Irrigation, for pastoral agriculture (beef, dairy and sheep), is the largest consumptive use of water in New Zealand. There is a potential risk of leaching of microbial contaminants from faecal matter through the vadose zone into groundwater. Management of irrigation is vital for protection of groundwater from these microbial contaminants and maintain efficient irrigation practices. Our research investigated flood and spray irrigation, two practices common in New Zealand. The aim was to identify the risk of microbial transport and mitigation practices to reduce or eliminate the risk of microbial transport into groundwater. Cowpats were placed on lysimeters over a typical New Zealand soil (Lismore silt loam) and vadose zone and the leachate collected after irrigation events. Samples of both cowpats and leachate were analysed for the microbial indicator Escherichia coli and pathogen Campylobacter species. A key driver to the microbial transport derived from the model applied was the volume of leachate collected: doubling the leachate volume more than doubled the total recovery of E. coli. The persistence of E. coli in the cowpats during the experiment is an important factor as well as the initial environmental conditions, which were more favourable for survival and growth of E. coli during the spray irrigation compared with the flood irrigation. The results also suggest a reservoir of E. coli surviving in the soil. Although the same was potentially true for Campylobacter, little difference in the transport rates between irrigation practices could be seen due to the poor survival of Campylobacter during the experiment. Effective irrigation practices include monitoring the irrigation rates to minimise leachate production, delaying irrigation until 14days post-cowpat deposition and only irrigating when risk of transport to the groundwater is minimal.

AIM

To compare the risk of microbial contamination of groundwater from cowpats using two irrigation practices onto pasture.

Effect of low-concentration rhamnolipid on transport of Pseudomonas aeruginosa ATCC 9027 in an ideal porous medium with hydrophilic or hydrophobic surfaces

The success of effective bioaugmentation processes for remediation of soil and groundwater contamination requires effective transport of the injected microorganisms in the subsurface environment. In this study, the effect of low concentrations of monorhamnolipid biosurfactant solutions on transport of Pseudomonas aeruginosa in an ideal porous medium (glass beads) with hydrophilic or hydrophobic surfaces was investigated by conducting miscible-displacement experiments. Transport behavior was examined for both glucose-grown and hexadecane-grown cells, with low and high surface hydrophobicity, respectively. A clean-bed colloid deposition model was used for determination of deposition rate coefficients. Results show that cells with high surface hydrophobicity exhibit greater retention than cells with low surface hydrophobicity. Rhamnolipid affects cell transport primarily by changing cell surface hydrophobicity, with an additional minor effect by increasing solution ionic strength. There is a good linear relation between k and rhamnolipid-regulated cell surface hydrophobicity presented as bacterial-adhesion-to-hydrocarbon (BATH) rate of cells (R(2)=0.71). The results of this study show the importance of hydrophobic interaction for transport of bacterial cells in silica-based porous media, and the potential of using low-concentration rhamnolipid solutions for facilitating bacterial transport in bioaugmentation efforts.

Bayesian process-identification in bacteria transport in porous media

A Bayesian parameter estimation approach is developed for the estimation of joint probability distribution functions for colloid and bacterial fate and transport model parameters describing breakthrough curves (BTCs) obtained through porous media column studies, and is applied to data involving different ionic strength solutions to fit models of differing complexity. Our approach focuses on the simultaneous fitting of a number of BTCs representing different conditions, and it provides a measure of the goodness of model structure, namely Deviance Information Criteria (DIC). Comparison of DIC per model fit enables the evaluation of the significance of various processes through step-wise increases in complexity due to the addition of process model components. We use the method to investigate the transport of both flagellated and non-flagellated strains of Azotobacter vinelandii in a simulated porous media under three ionic strengths. Three different model structures are considered: one without a detachment process and with Langmuirian blocking function, one with detachment, and one with detachment and a second-order blocking function based on random sequential adsorption. First, the model was applied separately to each single BTC. Next, the model was applied comprehensively to the experiments under various ionic strengths, whereas some transport parameters including dispersivity, detachment coefficient, the fraction of cells undergoing irreversible attachment, and the coefficient of the second-order blocking term were assumed to be the same under different ionic strengths. In most cases, including detachment substantially improved the DIC as expected, whereas using the second-order blocking improved DIC for most of the cases when the method was applied to separate BTCs but not when the method was applied collectively to the three BTCs obtained under various ionic strengths. Also, comparing the outcomes of the separate applications of the parameter estimation algorithm versus the collective application indicates that the uncertainty associated with the estimated parameters is substantially smaller when the collective approach is used and also that the estimated parameters are more consistent with the expectations based on the underlying physical processes.