Can we meaningfully estimate the impacts of climate on zooplankton biodiversity? A review on uses and limitations of marine time series

Climate events compromise ecosystems functioning and services. Marine zooplankton play a key role linking primary producers and higher consumers, in the carbon export to deeper regions, and respond quickly to environmental change. We conducted a systematic review to assess the effects of climate on marine zooplankton diversity. We describe the major findings, uses and limitations raised in the literature from worldwide time series ≥5 years. Thirty-five studies were included and only 6 presented extractable data (i.e., those that could be extracted from images) for the most studied group (i.e., copepods). Responses to climate were conflicting, and studies were mostly restricted to the global north, applied richness, alpha- and beta-diversity equally, and had a large number of unresolved taxonomic identification. Standardized open long-term data would meaningfully help unveiling assemblage reorganization and allow meta-analyses to improve our understanding of the effects of climate change and variability on zooplankton biodiversity.

Identification of potential breeding ground of flathead grey mullet, Mugil cephalus (Linnaeus, 1758), along the Mumbai coast, India, for ecological monitoring and conservation strategies

Identifying the breeding grounds of fishes is crucial for the sustainable management of fisheries resources. The present study is aimed at identifying the potential breeding ground of Mugil cephalus along the estuary of the North Mumbai coast. A total of 1197 specimens of M. cephalus, including 546 eggs, 271 larvae, 235 juveniles, and 235 adults, were collected from four sampling stations in the Karanja estuary between January to October 2022. Water quality parameters, plankton dynamics in the estuary, and the reproductive and feeding biology of M. cephalus were also examined. The eggs, larvae, juveniles, and adults were identified using traditional morpho-meristic and DNA barcoding techniques. The results revealed a potential spawning ground of M. cephalus in the Karanja estuary. The results of reproductive biology also confirmed the occurrence of matured fishes during May-July. The abundance of eggs and larvae at the estuary's mouth and the presence of juveniles and mature individuals of M. cephalus dominantly in the Karanja estuary from May to July infer the presence of a spawning site. It is also recorded that M. cephalus spawn in higher salinity (35 ppt) and seawater temperature (33 °C) where the hatching of offspring takes place successfully. This study emphasizes the significance of DNA barcoding in guiding routine monitoring surveys and demonstrates its usefulness when combined with these techniques in identifying fish spawning grounds. The study findings will serve as baseline information to develop effective conservation and management strategies and protect the ideal spawning stock.

Identifying fish eggs and larvae: from classic methodologies to DNA metabarcoding

Studies involving fish eggs and larvae date back to the end of the nineteenth century. Since then, studies with ichthyoplankton have proved to be an essential tool, generating information for the knowledge of the ichthyofauna and the environmental inventory. Most of these studies reveal the difficulty of obtaining a precise taxonomic identification of the collected materials, making research with ichthyoplankton extremely challenging. With the advent of molecular biology, the use of markers such as COI enabled greater taxonomic precision, helping to understand events involving ichthyofauna. Now we can observe the evolution of the molecular identification tool for ichthyoplankton via DNA barcoding, which has been increasingly used over the last few decades. From 2000 to 2010, we found six publications; from 2011 to 2021, 75 papers were published, and in 2022 four studies. Our survey also showed the accuracy of molecular identification when compared to the taxonomic identification of these. In this review, we show the state of the art of studies that used barcode and DNA metabarcoding to identify fish eggs and larvae in different environments and discuss their importance as the best practice for working with these organisms.

Early detection monitoring for non-indigenous fishes; comparison of survey approaches during two species introductions in a Great Lakes port

Assessing relative performance of different sampling methods used for early detection monitoring (EDM) is a critical step in understanding the likelihood of detecting new non-indigenous species (NIS) in an environment of interest. EDM performance metrics are typically based on the probability of detecting established NIS or rare indigenous species; however, detection probability estimates for these proxies may not accurately reflect survey effectiveness for newly introduced NIS. We used data from three different EDM survey approaches that varied by targeted life-stage (adult-juvenile versus ichthyoplankton), media (physical fish versus environmental DNA), and taxonomic method (morphology-based versus DNA-based taxonomy) to explore relative detection sensitivity for recently introduced white bass (Morone chrysops) and gizzard shad (Dorosoma cepedianum) in the Port of Duluth-Superior, a NIS introduction hot spot within the Laurentian Great Lakes. Detection efficiency, measured by the effort (number of samples) required to achieve 95% probability of detection, differed by EDM approach and species. Also, the relative sensitivity (detection rate) of each survey approach differed by species. For both species, detection in surveys using DNA-based taxonomy was generally as good or better than the adult-juvenile survey using morphology-based taxonomy. While both species appear to have been detected at early stages of invasion, white bass were likely present up to 5 years prior to initial detection, whereas gizzard shad may have been detected in the first year of introduction. We conclude that using complimentary sampling methods can help to balance the strengths and weaknesses of each approach and provide more reliable early detection of new invaders.

Microplastics and plankton: Knowledge from laboratory and field studies to distinguish contamination from pollution

Due to their ubiquitous presence, size and characteristics as ability to adsorb pollutants, microplastics are hypothesized as causing a major impact on smaller organisms, such as plankton. Despite this, there is a need to determine whether these impacts just relate to the environmental presence of the materials or their effects on biological processes. Therefore, we aimed to 1) review current research on plankton and microplastics; 2) compare field and laboratory experimental findings, and 3) identify knowledge gaps. The systematic review showed that 70% of the 147 relevant scientific publications were from laboratory studies and microplastics interactions with plankton were recorded in 88 taxa. Field study publications were relatively scarce and the characteristics of microplastics collected in the field were very different from those used in laboratory experiments thereby limiting the comparison between studies. Our systematic review highlighted knowledge gaps in: 1) the number of field studies; 2) the non-comparability between laboratory and field conditions, and 3) the low diversity of plankton species studied. Furthermore, this review indicated that while there are many studies on contamination by microplastics, the effects of this contamination (i.e., pollution per se) have been less well-studied, especially in the field at population, community, and ecosystem levels.

Hydrodynamic variability and nutrient status structuring the mesozooplankton community of the estuaries along the west coast of India

The influence of distinct tidal characteristics and nutrient status on mesozooplankton community was studied in six major estuaries along the west coast of India during the late-monsoon (MS) and post-monsoon (PM) periods. The macro-tidal estuaries in the north (Amba and Thane) exhibited higher nutrient concentration compared to the micro- and meso-tidal estuaries located in the south (Cochin and Nethravati) and central (Zuari and Mandovi) west coast of India. The markedly higher nitrate and phosphate levels in the macro-tidal estuaries during PM indicated anthropogenic contributions from domestic and industrial effluents, which significantly impacted the mesozooplankton community structure. Nutrient enrichments favored higher phytoplankton standing stock leading to low DO levels. In the micro- and meso-tidal estuaries, meso- and euryhaline copepods dominated whereas in the macro-tidal estuaries, the copepod community was dominated by euryhaline and coastal species. Furthermore, the high-saline eutrophic environment of macro-tidal estuaries formed congenial for the increased jellyfish preponderance during PM. The predation pressure exerted by the jellyfish population on the crustacean zooplankton and ichthyoplankton exerted an adverse impact on the potential fishery stock in the macro-tidal estuaries. Thus, the study reveals that the nutrient enrichment favoring a shift in the mesozooplankton community structure from nutritionally superior crustacean plankton to less desirable jellyfishes, which in turn, may lead to a threat on the estuarine pelagic energy transfer and ecosystem deliverables.

Function of estuaries and coastal areas as nursery grounds for marine fish early life stages

The present study describes the larval and juvenile fish fauna of an estuary and its adjacent coastal area (Mondego estuary, Northwest coast of Portugal) and evaluates their function as nurseries for marine fish. For this, larvae and juveniles were sampled in both systems. The temporal and spatial patterns of the ichthyoplankton community were described for each system and related to the influence of environmental factors. Additionally, the recruitment pattern was evaluated based on the composition of juveniles. Results show a seasonal variation of larval density and community structure between and within systems, indicating a degree of segregation according to their ecological functional classification. Temperature was the most important environmental factor structuring the communities. The juvenile recruitment patterns observed show a different nursery function of the estuary and coastal area for early life stages of different species, reinforcing the need to integrate larval and juvenile stages to better understand fish life cycles and the connectivity between systems.

Signals from the deep-sea: Genetic structure, morphometric analysis, and ecological implications of Cyclothone braueri (Pisces, Gonostomatidae) early life stages in the Central Mediterranean Sea

Cyclothone braueri (Stomiiformes, Gonostomatidae) is a widely distributed fish inhabiting the mesopelagic zone of marine tropical and temperate waters. Constituting one of the largest biomasses of the ocean, C. braueri is a key element in most of the ecological processes occurring in the twilight layer. We focused on the ecological processes linked to early life stages in relation to marine pelagic environmental drivers (temperature, salinity, food availability and geostrophic currents) considering different regions of the Central Mediterranean Sea. A multivariate morphometric analysis was carried out using six parameters with the aim of discerning different larval morphotypes, while a fragment of 367 bp representing the 12S ribosomal RNA gene was used to perform molecular analyses aimed at determining the intraspecific genetic variability. Analysis highlighted two geographically distinct morphotypes not genetically discernible and related to the different nutritional conditions due to spatial heterogeneities in terms of temperature and food availability. The body depth (BD) emerged as an appropriate morphometric parameter to detect the larval condition in this species. Molecular analysis highlighted a moderate genetic divergence in the fish population, showing the recurrence of two phylogroups not geographically separated.

Seagrass and rhodolith beds are important seascapes for the development of fish eggs and larvae in tropical coastal areas

In this study, the ichthyoplankton in two distinct tropical seascapes, gravelly sand with rhodolith beds (SRB) and muddy sand with seagrasses, were compared. The number of eggs was higher in the seagrass beds; however, the number of fish larvae was slightly higher in the SRB. Seagrass beds present less turbulent hydrodynamics and favor the retention of eggs and spawning. A more structured habitat provides better shelter, especially for eggs. However, as ontogeny progresses, the fish can explore areas with less shelter. This behavior was observed in this study, where the less structured SRB habitat had a high density of larvae in the later developmental stage. The dominance of earlier larval stages demonstrates a preference for more protected and less turbulent seascapes for nursery and offspring rearing. The results highlight that mapping of these seascapes (e.g., seagrass and rhodolith beds) will help to establish conservation measures to protect ecological connectivity and important tropical species.

Efficacy of metabarcoding for identification of fish eggs evaluated with mock communities

There is urgent need for effective and efficient monitoring of marine fish populations. Monitoring eggs and larval fish may be more informative than that traditional fish surveys since ichthyoplankton surveys reveal the reproductive activities of fish populations, which directly impact their population trajectories. Ichthyoplankton surveys have turned to molecular methods (DNA barcoding & metabarcoding) for identification of eggs and larval fish due to challenges of morphological identification. In this study, we examine the effectiveness of using metabarcoding methods on mock communities of known fish egg DNA. We constructed six mock communities with known ratios of species. In addition, we analyzed two samples from a large field collection of fish eggs and compared metabarcoding results with traditional DNA barcoding results. We examine the ability of our metabarcoding methods to detect species and relative proportion of species identified in each mock community. We found that our metabarcoding methods were able to detect species at very low input proportions; however, levels of successful detection depended on the markers used in amplification, suggesting that the use of multiple markers is desirable. Variability in our quantitative results may result from amplification bias as well as interspecific variation in mitochondrial DNA copy number. Our results demonstrate that there remain significant challenges to using metabarcoding for estimating proportional species composition; however, the results provide important insights into understanding how to interpret metabarcoding data. This study will aid in the continuing development of efficient molecular methods of biological monitoring for fisheries management.

Effects of pH on the incubation and early development of fish species with different reproductive strategies

Fish reproduction in natural environments tends to occur in conditions, including extreme pH values, ideal for the survival of offspring. In this context, the purpose of this study was to assess the influence of pH on both survival and early development of two fish species, Astyanax lacustris (short-distance migrating fish) and Piaractus mesopotamicus (long-distance migrating fish), with different reproductive strategies. Our experiments were divided into two tests (incubation and larviculture) at five pH levels. First was incubation through a water recirculation system using 2 L incubators followed by larviculture using a 2.5 L aquarium. pH had no influence on the hatching rate of A. lacustris eggs, but affected the yolk-sac diameter, while the newly-hatched larvae had some skeletal disorders. For P. mesopotamicus, pH influenced the hatching rate and perivitelline space, while the newly-hatched larvae had several skeletal disorders. The larviculture of A. lacustris revealed no effect on the survival rate, but the analyzed morphometric variables indicated significant differences between the treatments. An acidic pH negatively influenced the survival rate of P. mesopotamicus, and all morphometric variables also varied significantly between the treatments. We concluded that both the survival and development of A. lacustris and P. mesopotamicus revealed different responses at pH levels during incubation and larviculture tests.

Seasonal variations of the ichthyoplankton assemblage in the Yangtze Estuary and its relationship with environmental factors

Seasonal variations of the ichthyoplankton assemblage and its relationship with the environment were analyzed based on four seasonal surveys during 2012. Historical data was collected to be compared with results from previous years in order to indicate the seasonal and inter-annual variation of the ichthyoplankton assemblage in the Yangtze Estuary and the adjacent waters. A total of 3,688 individuals belonging to 5 orders, 9 families, and 15 species were collected. No samples were collected in the winter cruise. In 2012, all samples were separated into four ecotypes, which is comparable with the historical data from previous years. The Engraulis japonicus was the most abundant species of all teleost fishes. The E. japonicus was captured in every season and contributed the most to the abundance of ichthyoplankton, which was greater than that of previous years. This result may be due to the periodic fluctuations of E. japonicus or from the displacement of spawning grounds offshore for environmental reasons. The diversity indices of the assemblage were significantly different among seasons, with the number and abundance of the species peaking in the spring, while richness, evenness and diversity indices peaked in the autumn. The species richness of the ichthyoplankton varied from 0.74 to 1.62, the Pielou evenness index varied from 0.10 to 0.49 and the Shannon–Wiener index varied from 0.19 to 1.04. The results of CCA analysis showed that the major factors affecting the ichthyoplankton assemblage differed throughout the seasons. Chla was the key factor affecting the ichthyoplankton in 2012. These seasonal and inter-annual variations likely resulted from migrations associated with fish spawning as well as the environment. Compared with data from previous studies, the relationship between the assemblage structure of ichthyoplankton and corresponding environmental variables have undergone a decline.

New records of larval stages of the eel cod genus Muraenolepis Günther 1880 (Gadiformes: Muraenolepididae) from the western Antarctic Peninsula

Three newly discovered larval specimens of the genus Muraenolepis collected from the waters of the western Antarctic Peninsula are described. Knowledge of their natural history is sparse and information about their early life history is based on only a few larval stages. Here, the available literature on larval eel cods is reviewed, and the specimens placed in context.

Ichthyoplankton assemblage structure of springs in the Yangtze Estuary revealed by biological and environmental visions

The ichthyoplankton assemblage structure in the Yangtze Estuary was analyzed based on four springs in 1999, 2001, 2004 and 2007 in order to provide detailed characterizations of the ichthyoplankton assemblage in springs, examine the long-term dynamics of spring ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary. Forty-two ichthyoplankton species belonging to 23 families were collected. Engraulidae was the most abundant family, including six species and comprising 67.91% of the total catch. Only four species (Coilia mystus, Engraulis japonicus, Trachidermis fasciatus and Allanetta bleekeri) could be considered dominant, accounting for 88.70% of total abundance. The structure of the ichthyoplankton spring assemblage persisted on an annual basis, with the dominant species reappearing consistently even though their abundance fluctuated from year to year. This inter-annual variation probably reflects variable environmental conditions influenced by jellyfish blooms, declining river flow, and overfishing. Canonical correspondence analysis indicated aspatial structure of the ichthyoplankton assemblage in three areas: (1) an inner assemblage dominated by C. mystus; (2) a central assemblage dominated by A. bleekeri and T. fasciatus; and (3) a shelf assemblage featuring E. japonicus. The observed ichthyoplankton assemblage structure appears to be strongly influenced by depth, salinity and suspended particulate matter gradients.