Deciphering temporal gene expression dynamics in multiple coral species exposed to heat stress: Implications for predicting resilience

Coral reefs are facing unprecedented threats due to global climate change, particularly elevated sea surface temperatures causing coral bleaching. Understanding coral responses at the molecular level is crucial for predicting their resilience and developing effective conservation strategies. In this study, we conducted a comprehensive gene expression analysis of four coral species to investigate their long-term molecular response to heat stress. We identified distinct gene expression patterns among the coral species, with laminar corals exhibiting a stronger response compared to branching corals. Heat shock proteins (HSPs) showed an overall decreasing expression trend, indicating the high energy cost associated with sustaining elevated HSP levels during prolonged heat stress. Peroxidases and oxidoreductases involved in oxidative stress response demonstrated significant upregulation, highlighting their role in maintaining cellular redox balance. Differential expression of genes related to calcium homeostasis and bioluminescence suggested distinct mechanisms for coping with heat stress among the coral species. Furthermore, the impact of heat stress on coral biomineralization varied, with downregulation of carbonic anhydrase and skeletal organic matrix proteins indicating reduced capacity for biomineralization in the later stages of heat stress. Our findings provide insights into the molecular mechanisms underlying coral responses to heat stress and highlight the importance of considering species-specific responses in assessing coral resilience. The identified biomarkers may serve as indicators of heat stress and contribute to early detection of coral bleaching events. These findings contribute to our understanding of coral resilience and provide a basis for future research aimed at enhancing coral survival in the face of climate change.

Reduced genetic diversity and restricted gene flow of broadcast-spawning coral Galaxea fascicularis in the South China Sea reveals potential degradation under environmental change

Under the dual effects of climate change and anthropogenic activities, coral reefs in the South China Sea (SCS) are at serious risk of degradation. Galaxea fascicularis is a widely distributed species in the SCS, and the study of its genetics, survival, and adaptability is conducive to further understanding the future characteristics of coral reefs in the SCS. In this study, 146 G. fascicularis samples were selected from 9 survey stations across 12 latitudes in the SCS, and 8 pairs of microsatellite markers were used to characterize their genetic diversity and structure. The results showed moderate genetic diversity index values (Ar = 3.444-4.147, He = 0.634-0.782, Ho = 0.367-0.586). The AMOVA results and pairwise FST values showed a moderate level of genetic differentiation (ΦST = 0.119, P < 0.05) among G. fascicularis populations in the SCS, whereas its genetic structure showed high genetic differentiation (FST = 0.062-0.225) among relatively high-latitude populations (n = 3) and low genetic differentiation (FST = 0.012-0.064) in low-latitude populations (n = 6). The living environment of relatively high-latitude populations is disturbed by high-intensity human activities, leading to the specialization of local populations. Mantel test results showed a significant positive correlation between genetic differentiation among G. fascicularis populations and sea surface temperature (SST) variance (R2 = 0.4885; Mantel test, p = 0.010 < 0.05) in addition to geographical distance (R2 = 0.1134; Mantel, test p = 0.040 < 0.05), indicating that SST and geographical isolation were primary factors affecting the genetic structure of this species in the SCS. The lower genetic diversity and limited gene flow of G. fascicularis indicate limited genetic adaptation, and corresponding vulnerability may be more pronounced under future environmental changes. These findings provide a theoretical basis for the conservation and restoration of coral reefs in the SCS.

Long-term survival, growth, and reproduction of Acropora palmata sexual recruits outplanted onto Mexican Caribbean reefs

Acropora palmata is a foundational yet endangered Caribbean reef-building coral species. The lack of recovery after a disease outbreak and low recruitment has led to widespread use of fragmentation to restore populations. Another option is the production of sexual recruits (settlers) via assisted reproduction to improve the genetic diversity of depleted populations; however, the viability of this approach has not been tested over the long term. In 2011 and 2012, A. palmata larvae were cultured, settled, and the sexual recruits raised in an ex-situ nursery. Survival and growth were monitored over time. In 2014, these two F1 cohorts were moved to an in-situ nursery and after one year, a subset (29 colonies) was outplanted onto Cuevones Reef in the Mexican Caribbean. Growth and survival of these colonies were monitored periodically and compared to colonies that remained in the in-situ nursery. In 2019, samples were collected and analyzed for fertility and fecundity. 53% of the colonies were gravid and fecundity was 5.61 ± 1.91 oocytes and 3.04 ± 0.26 spermaries per polyp. A further 14 colonies from these two cohorts were outplanted in 2020 onto Picudas Reef and monitored during the subsequent spawning seasons. Two years after outplanting onto Picudas Reef, all colonies were alive and spawning of three of these colonies was recorded in 2022 in synchrony with the wild population. Gametes were collected from two colonies and crossed, with 15% fertilization success. Spermatozoa from wild colonies were then added and fertilization success increased to 95%. The resultant larvae followed normal development and symbiont uptake was visible within two weeks. The F2 generation was settled, maintained in an ex-situ nursery, and monitored for survival and growth. Both F1 and F2 generations followed a Type III survival curve with high initial mortality while in the ex-situ nursery and low later-stage mortality. The growth rates of these colonies increased three-fold after outplanting when compared to their growth rates in the ex-situ and in-situ nurseries. All colonies survived while in the in-situ nursery and for an additional nine years after outplanting onto Cuevones Reef. Overall, our results show that colonies produced by assisted breeding, once outplanted, may contribute to the genetic diversity and establishment of self-sustaining sexually-reproducing populations, which is an overarching goal of coral restoration programs.

First detection of microplastics in reef-building corals from a Maldivian atoll

The presence of microplastics in the world's oceans and their effects on marine habitats are highly concerning. As suspension-feeders, corals are very exposed to microplastics, compromising the health of coral reef ecosystems. In this study we surveyed for the first time the presence of microplastics in Maldivian reef-building corals. Aiming to determine the influence of exposure and depth on microplastic distribution, analyses were carried out on 38 individuals belonging to three different species. 58% of the investigated colonies resulted contaminated with particles within the 25-150 μm size range. The maximum concentration was encountered in a Pocillopora verrucosa colony sampled from a shallow inner reef (8.9 particles/g of coral). No significant differences in microplastic concentration were observed between different depths, exposures, sites and species. Overall, this study confirmed microplastic presence in coral reefs of the Maldivian archipelago including foundation species.

High genetic differentiation and moderate genetic diversity of the degenerative branching coral Pocillopora verrucosa in the tropical South China Sea

Global warming is causing rapid degradation of coral reefs, among which branching corals are degrading the fastest. An assessment of coral genetic diversity and adaptive potential provides a basis for coral reef protection. In this study, we selected the branching coral Pocillopora verrucosa, a widely distributed species in the tropical South China Sea (SCS), to carry out population genetic studies. To analyze the genetic diversity and structure of 319 P. verrucosa samples from 10 populations in 4 SCS regions, twelve pairs of microsatellite primers and two nuclear markers, ITS and β-tub, were selected. Microsatellite marker results showed moderate genetic diversity for P. verrucosa in the SCS, but relatively low diversity in Dazhou Island and Yongxing Island. The haplotype network showed that P. verrucosa in the SCS was derived from two ancestors, which may be linked to geographical isolation in the Pleistocene glacial period. AMOVA (Φ_ST = 0.3375) and F_ST pairwise analysis results based on β-tub showed that the populations were highly differentiated, with most F_ST values (21/45) > 0.25. Yongxing and Qilianyu Islands populations were significantly different from those in the Xisha area. Mantel test results showed that genetic differentiation among P. verrucosa populations was significantly and positively correlated with both mean sea surface temperature (SST) and SST variance, and was not correlated with distance, chlorophyll-a, or turbidity. The reproductive mode of brooding planulae was an important factor contributing to high genetic differentiation among populations. The moderate genetic diversity of SCS P. verrucosa indicates that this population has a certain genetic potential in the context of global changes, but the high genetic differentiation between populations increases the risk of local degradation or extinction. This study provides a theoretical basis for the protection and restoration of SCS coral reefs.

Impacts of coastal land use change in the wet tropics on nearshore coral reefs: Case studies from Papua New Guinea

Logging and plantation agriculture are vital to economies and livelihoods in tropical nations, including Papua New Guinea. To meet global demand, hundreds of thousands of ha of diverse natural habitat have been logged, cleared and replaced with monoculture crops. Resulting hydrological changes have increased sediment, nutrient and pesticide runoff, impacting down-stream habitats. Here, case studies from Kimbe Bay (New Britain) and Mullins Harbour (Milne Bay), examine effects on nearshore coral reefs. In both places, logging and oil palm development had destabilized soils and removed or degraded riparian vegetation. Downstream, nearshore reefs had high silt levels, which, coincident with minor coral bleaching and predation by crown-of-thorns starfish, were correlated with high levels of coral mortality and low coral species richness. Sediment and related impacts can be reduced by effective catchment management, such as avoiding steep slopes, expanding stream and coastal buffer zones, minimizing fertilizer and pesticide use, monitoring and reactive management.

Intracellular pH regulation: characterization and functional investigation of H+ transporters in Stylophora pistillata

BACKGROUND

Reef-building corals regularly experience changes in intra- and extracellular H⁺ concentrations ([H⁺]) due to physiological and environmental processes. Stringent control of [H⁺] is required to maintain the homeostatic acid-base balance in coral cells and is achieved through the regulation of intracellular pH (pH_i). This task is especially challenging for reef-building corals that share an endosymbiotic relationship with photosynthetic dinoflagellates (family Symbiodinaceae), which significantly affect the pH_i of coral cells. Despite their importance, the pH regulatory proteins involved in the homeostatic acid-base balance have been scarcely investigated in corals. Here, we report in the coral Stylophora pistillata a full characterization of the genomic structure, domain topology and phylogeny of three major H⁺ transporter families that are known to play a role in the intracellular pH regulation of animal cells; we investigated their tissue-specific expression patterns and assessed the effect of seawater acidification on their expression levels.

RESULTS

We identified members of the Na⁺/H⁺ exchanger (SLC9), vacuolar-type electrogenic H⁺-ATP hydrolase (V-ATPase) and voltage-gated proton channel (H_vCN) families in the genome and transcriptome of S. pistillata. In addition, we identified a novel member of the H_vCN gene family in the cnidarian subclass Hexacorallia that has not been previously described in any species. We also identified key residues that contribute to H⁺ transporter substrate specificity, protein function and regulation. Last, we demonstrated that some of these proteins have different tissue expression patterns, and most are unaffected by exposure to seawater acidification.

CONCLUSIONS

In this study, we provide the first characterization of H⁺ transporters that might contribute to the homeostatic acid-base balance in coral cells. This work will enrich the knowledge of the basic aspects of coral biology and has important implications for our understanding of how corals regulate their intracellular environment.

Species-specific impact of microplastics on coral physiology

There is evidence that microplastic (MP) pollution can negatively influence coral health; however, mechanisms are unknown and most studies have used MP exposure concentrations that are considerably higher than current environmental conditions. Furthermore, whether MP exposure influences coral susceptibility to other stressors such as ocean warming is unknown. Our objective was to determine the physiology response of corals exposed to MP concentrations that have been observed in-situ at ambient and elevated temperature that replicates ocean warming. Here, two sets of short-term experiments were conducted at ambient and elevated temperature, exposing the corals Acroporasp. and Seriatopora hystrix to microspheres and microfibres. Throughout the experiments, gross photosynthesis and net respiration was quantified using a 4-chamber coral respirometer, and photosynthetic yields of photosystem II were measured using Pulse-Amplitude Modulated (PAM) fluorometry. Results indicate the effect of MP exposure is dependent on MP type, coral species, and temperature. MP fibres (but not spheres) reduced photosynthetic capability of Acropora sp., with a 41% decrease in photochemical efficiency at ambient temperature over 12 days. No additional stress response was observed at elevated temperature; photosynthetic performance significantly increased in Seriatopora hystrix exposed to MP spheres. These findings show that a disruption to coral photosynthetic ability can occur at MP concentrations that have been observed in the marine environment and that MP pollution impact on corals remains an important aspect for further research.

The role of geomorphic zonation in long-term changes in coral-community structure on a Caribbean fringing reef

Ecological processes on coral reefs commonly have limited spatial and temporal scales and may not be recorded in their long-term geological history. The widespread degradation of Caribbean coral reefs over the last 40 years therefore provides an opportunity to assess the impact of more significant ecological changes on the geological and geomorphic structure of reefs. Here, we document the changing ecology of communities in a coral reef seascape within the context of its geomorphic zonation. By comparing basic ecological indices between historical and modern data we show that in 35 years the reef-front zone was transformed from a complex coral assemblage with a three-dimensional structure, to a size-homogenized and flattened one that is quasi indistinguishable from the adjacent non-accretional coral-ground zone. Today coral assemblages at Punta Maroma are characterized by the dominance of opportunistic species which are either tolerant to adverse environmental conditions, including sedimentation, or are known to be the first scleractinian species to recruit on disturbed reefs, implying they reflect a post-hurricane stage of adjustment. Despite an increase in similarity in ecological indices, the reef-front and coral-ground geomorphic zones still retain significant differences in coral assemblages and benthic habitat and are not homogeneous. The partial convergence of coral assemblages certainly has important consequences for the ecology and geological viability of the reef and its role in coastal protection, but environmental physical drivers continue to exert a fundamental role in the character and zonation of benthic communities of this reef seascape.

Impacts of microplastics on growth and health of hermatypic corals are species-specific

Coral reefs are increasingly affected by the consequences of global change such as increasing temperatures or pollution. Lately, microplastics (i.e., fragments < 5 mm) have been identified as another potential threat. While previous studies have assessed short-term effects caused by high concentrations of microplastics, nothing is known about the long-term effects of microplastics under realistic concentrations. Therefore, a microcosm study was conducted and corals of the genera Acropora, Pocillopora, Porites, and Heliopora were exposed to microplastics in a concentration of 200 particles L^-1, relating to predicted pollution levels. Coral growth and health, as well as symbiont properties were studied over a period of six months. The exposure caused species-specific effects on coral growth and photosynthetic performance. Signs of compromised health were observed for Acropora and Pocillopora, those taxa that frequently interact with the particles. The results indicate elevated energy demands in the affected species, likely due to physical contact of the corals to the microplastics. The study shows that microplastic pollution can have negative impacts on hermatypic corals. These effects might amplify corals' susceptibility to other stressors, further contributing to community shifts in coral reef assemblages.