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Cioni M, Delle Piane M, Polino D, Rapetti D, Crippa M, Irmak EA, Van Aert S, Bals S, Pavan GM. Sampling Real-Time Atomic Dynamics in Metal Nanoparticles by Combining Experiments, Simulations, and Machine Learning. Adv Sci (Weinh) 2024:e2307261. [PMID: 38654692 DOI: 10.1002/advs.202307261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Revised: 02/23/2024] [Indexed: 04/26/2024]
Abstract
Even at low temperatures, metal nanoparticles (NPs) possess atomic dynamics that are key for their properties but challenging to elucidate. Recent experimental advances allow obtaining atomic-resolution snapshots of the NPs in realistic regimes, but data acquisition limitations hinder the experimental reconstruction of the atomic dynamics present within them. Molecular simulations have the advantage that these allow directly tracking the motion of atoms over time. However, these typically start from ideal/perfect NP structures and, suffering from sampling limits, provide results that are often dependent on the initial/putative structure and remain purely indicative. Here, by combining state-of-the-art experimental and computational approaches, how it is possible to tackle the limitations of both approaches and resolve the atomistic dynamics present in metal NPs in realistic conditions is demonstrated. Annular dark-field scanning transmission electron microscopy enables the acquisition of ten high-resolution images of an Au NP at intervals of 0.6 s. These are used to reconstruct atomistic 3D models of the real NP used to run ten independent molecular dynamics simulations. Machine learning analyses of the simulation trajectories allow resolving the real-time atomic dynamics present within the NP. This provides a robust combined experimental/computational approach to characterize the structural dynamics of metal NPs in realistic conditions.
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Affiliation(s)
- Matteo Cioni
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, Torino, 10129, Italy
| | - Massimo Delle Piane
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, Torino, 10129, Italy
| | - Daniela Polino
- Department of Innovative Technologies, University of Applied Sciences and Arts of Southern Switzerland, Polo Universitario Lugano, Campus Est, Via la Santa 1, Lugano-Viganello, 6962, Switzerland
| | - Daniele Rapetti
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, Torino, 10129, Italy
| | - Martina Crippa
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, Torino, 10129, Italy
| | - Ece Arslan Irmak
- EMAT and NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, Antwerp, 2020, Belgium
| | - Sandra Van Aert
- EMAT and NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, Antwerp, 2020, Belgium
| | - Sara Bals
- EMAT and NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, Antwerp, 2020, Belgium
| | - Giovanni M Pavan
- Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, Torino, 10129, Italy
- Department of Innovative Technologies, University of Applied Sciences and Arts of Southern Switzerland, Polo Universitario Lugano, Campus Est, Via la Santa 1, Lugano-Viganello, 6962, Switzerland
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Inui M, Hosokawa S, Tsutsui S, Nakajima Y, Matsuda K, Maruyama K, Baron AQR. Collective excitations in a melt of fast phase change material GeCu 2Te 3. J Phys Condens Matter 2023; 35:234002. [PMID: 36893472 DOI: 10.1088/1361-648x/acc2ff] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Accepted: 03/09/2023] [Indexed: 06/18/2023]
Abstract
Inelastic x-ray scattering measurements have been carried out to investigate atomic dynamics in a melt of fast phase change material GeCu2Te3. The dynamic structure factor was analysed using the model function with three damped harmonic oscillator components. By investigating the correlation between the excitation energy and the linewidth, and that between the excitation energy and the intensity on contour maps of a relative approximate probability distribution function proportional toexp(-χ2/N), we could judge the reliability of each inelastic excitation in the dynamic structure factor. The results indicate that there are two inelastic excitation modes besides the longitudinal acoustic one in the liquid. The lower energy excitation could be assigned to the transverse acoustic one whereas the higher energy one disperses like fast sound. The latter result may imply that the liquid ternary alloy exhibits a microscopic phase separation tendency.
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Affiliation(s)
- M Inui
- Graduate School of Advanced Science and Engineering, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-8521, Japan
| | - S Hosokawa
- Institute of Industrial Nanomaterials, Kumamoto University, Kumamoto 860-8555, Japan
| | - S Tsutsui
- Japan Synchrotron Radiation Research Institute (JASRI), Sayo-cho, Hyogo 679-5198, Japan
| | - Y Nakajima
- Department of Physics, Kumamoto University, Kumamoto 860-8555, Japan
| | - K Matsuda
- Department of Physics, Kumamoto University, Kumamoto 860-8555, Japan
| | - K Maruyama
- Faculty of Science, Niigata University, Niigata 950-2181, Japan
| | - A Q R Baron
- Japan Synchrotron Radiation Research Institute (JASRI), Sayo-cho, Hyogo 679-5198, Japan
- Materials Dynamics Laboratory, RIKEN SPring-8 Center, Sayo-cho, Hyogo 679-5148, Japan
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Zagler G, Stecher M, Trentino A, Kraft F, Su C, Postl A, Längle M, Pesenhofer C, Mangler C, Åhlgren EH, Markevich A, Zettl A, Kotakoski J, Susi T, Mustonen K. Beam-driven Dynamics of Aluminium Dopants in Graphene. 2d Mater 2022; 9:035009. [PMID: 35694040 PMCID: PMC9186522 DOI: 10.1088/2053-1583/ac6c30] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Substituting heteroatoms into graphene can tune its properties for applications ranging from catalysis to spintronics. The further recent discovery that covalent impurities in graphene can be manipulated at atomic precision using a focused electron beam may open avenues towards sub-nanometer device architectures. However, the preparation of clean samples with a high density of dopants is still very challenging. Here, we report vacancy-mediated substitution of aluminium into laser-cleaned graphene, and without removal from our ultra-high vacuum apparatus, study their dynamics under 60 keV electron irradiation using aberration-corrected scanning transmission electron microscopy and spectroscopy. Three- and four-coordinated Al sites are identified, showing excellent agreement with ab initio predictions including binding energies and electron energy-loss spectrum simulations. We show that the direct exchange of carbon and aluminium atoms predicted earlier occurs under electron irradiation, although unexpectedly it is less probable than the same process for silicon. We also observe a previously unknown nitrogen-aluminium exchange that occurs at Al─N double-dopant sites at graphene divacancies created by our plasma treatment.
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Affiliation(s)
- Georg Zagler
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | - Maximilian Stecher
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | - Alberto Trentino
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | - Fabian Kraft
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | - Cong Su
- Department of Physics, University of California, Berkeley, CA 94720, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Kavli Energy NanoSciences Institute at the University of California, Berkeley, CA 94720, USA
| | - Andreas Postl
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | - Manuel Längle
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | | | - Clemens Mangler
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | - E. Harriet Åhlgren
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | | | - Alex Zettl
- Department of Physics, University of California, Berkeley, CA 94720, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Kavli Energy NanoSciences Institute at the University of California, Berkeley, CA 94720, USA
| | - Jani Kotakoski
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | - Toma Susi
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
| | - Kimmo Mustonen
- University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090, Austria
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Inui M, Kajihara Y, Hosokawa S, Chiba A, Nakajima Y, Matsuda K, Stellhorn JR, Hagiya T, Ishikawa D, Uchiyama H, Tsutsui S, Baron AQR. Low energy excitation in liquid Sb and liquid Bi observed in inelastic x-ray scattering spectra. J Phys Condens Matter 2021; 33:475101. [PMID: 34438373 DOI: 10.1088/1361-648x/ac216c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Accepted: 08/26/2021] [Indexed: 06/13/2023]
Abstract
The dynamic structure factorS(Q,E), whereQandEare momentum and energy transfer, respectively, has been measured for liquid Sb, using inelastic x-ray scattering. A modified damped harmonic oscillator model function was applied to analyseS(Q,E) of liquid Sb and also to that of liquid Bi by Inuiet al(2015Phys. Rev.B92, 054206). The obtained excitation energy was in fairly good agreement with that predicted byab initiomolecular dynamics simulations on these liquid semi-metals. The excitation energy of the longitudinal acoustic mode in liquid Sb and liquid Bi exhibits flat-toppedQdependence whereas the lower excitation energy below the longitudinal acoustic excitation showsQ-gap behaviour. From the viscosity estimated from theQ-gap experimentally obtained, it is inferred that the lower energy excitation arises from the transverse acoustic excitation in the liquids.
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Affiliation(s)
- M Inui
- Graduate School of Advanced Science and Engineering, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-8521, Japan
| | - Y Kajihara
- Graduate School of Advanced Science and Engineering, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-8521, Japan
| | - S Hosokawa
- Department of Physics, Kumamoto University, Kumamoto 860-8555, Japan
| | - A Chiba
- Department of Physics, Keio University, Yokohama 223-8522, Japan
| | - Y Nakajima
- Department of Physics, Kumamoto University, Kumamoto 860-8555, Japan
| | - K Matsuda
- Department of Physics, Kumamoto University, Kumamoto 860-8555, Japan
| | - J R Stellhorn
- Graduate School of Advanced Science and Engineering, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-8521, Japan
| | - T Hagiya
- Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - D Ishikawa
- Japan Synchrotron Radiation Research Institute (JASRI), Sayo-cho, Hyogo 679-5198, Japan
| | - H Uchiyama
- Japan Synchrotron Radiation Research Institute (JASRI), Sayo-cho, Hyogo 679-5198, Japan
| | - S Tsutsui
- Japan Synchrotron Radiation Research Institute (JASRI), Sayo-cho, Hyogo 679-5198, Japan
| | - A Q R Baron
- Japan Synchrotron Radiation Research Institute (JASRI), Sayo-cho, Hyogo 679-5198, Japan
- Materials Dynamics Laboratory, RIKEN SPring-8 Center, Sayo, Hyogo 679-5148, Japan
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Ishikawa D, Baron AQR. Temperature gradient analyzers for compact high-resolution X-ray spectrometers. J Synchrotron Radiat 2010; 17:12-24. [PMID: 20029107 PMCID: PMC2797303 DOI: 10.1107/s0909049509043167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2009] [Accepted: 10/20/2009] [Indexed: 05/28/2023]
Abstract
Compact high-resolution X-ray spectrometers with a one-dimensional temperature gradient at the analyzer crystal are considered. This gradient, combined with the use of a position-sensitive detector, makes it possible to relax the usual Rowland-circle condition, allowing increased space at the sample position for a given energy resolution or arm radius. Thus, for example, it is estimated that approximately meV resolution is possible with a 3 m analyzer arm and 200 mm clearance between the sample and detector. Simple analytic formulae are provided, supported by excellent agreement with ray-tracing simulations. One variation of this method also allows the detector position sensitivity to be used to determine momentum transfer, effectively improving momentum resolution without reducing (slitting down) the analyzer size. Application to medium-resolution ( approximately 10-100 meV) inelastic X-ray scattering spectrometers with large angular acceptance is discussed, where this method also allows increased space at the sample. In some cases the application of a temperature gradient can improve the energy resolution even with a single-element detector.
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Affiliation(s)
- D. Ishikawa
- Materials Dynamics Laboratory, RIKEN/SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan
- Research and Utilization Division, JASRI/SPring-8, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
| | - A. Q. R. Baron
- Materials Dynamics Laboratory, RIKEN/SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan
- Research and Utilization Division, JASRI/SPring-8, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
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