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Chen Y, Kobayashi M, Yuhn C, Oshima M. Development of a 3D Vascular Network Visualization Platform for One-Dimensional Hemodynamic Simulation. Bioengineering (Basel) 2024; 11:313. [PMID: 38671739 PMCID: PMC11047578 DOI: 10.3390/bioengineering11040313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 03/13/2024] [Accepted: 03/20/2024] [Indexed: 04/28/2024] Open
Abstract
Recent advancements in computational performance and medical simulation technology have made significant strides, particularly in predictive diagnosis. This study focuses on the blood flow simulation reduced-order models, which provide swift and cost-effective solutions for complex vascular systems, positioning them as practical alternatives to 3D simulations in resource-limited medical settings. The paper introduces a visualization platform for patient-specific and image-based 1D-0D simulations. This platform covers the entire workflow, from modeling to dynamic 3D visualization of simulation results. Two case studies on, respectively, carotid stenosis and arterial remodeling demonstrate its utility in blood flow simulation applications.
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Affiliation(s)
- Yan Chen
- Graduate School of Interdisciplinary Information Studies, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan;
| | - Masaharu Kobayashi
- Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan;
| | - Changyoung Yuhn
- Department of Mechanical Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan;
| | - Marie Oshima
- Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan;
- Interfaculty Initiative in Information Studies, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
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Ji A, Kasting JF, Cooke GJ, Marsh DR, Tsigaridis K. Comparison between ozone column depths and methane lifetimes computed by one- and three-dimensional models at different atmospheric O 2 levels. R Soc Open Sci 2023; 10:230056. [PMID: 37153363 PMCID: PMC10154922 DOI: 10.1098/rsos.230056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 04/13/2023] [Indexed: 05/09/2023]
Abstract
Recently, Cooke et al. (Cooke et al. 2022 R. Soc. Open Sci. 9, 211165. (doi:10.1098/rsos.211165)) used a three-dimensional coupled chemistry-climate model (WACCM6) to calculate ozone column depths at varied atmospheric O2 levels. They argued that previous one-dimensional (1-D) photochemical model studies, e.g. Segura et al. (Segura et al. 2003 Astrobiology 3, 689-708. (doi:10.1089/153110703322736024)), may have overestimated the ozone column depth at low pO2, and hence also overestimated the lifetime of methane. We have compared new simulations from an updated version of the Segura et al. model with those from WACCM6, together with some results from a second three-dimensional model. The discrepancy in ozone column depths is probably due to multiple interacting parameters, including H2O in the upper troposphere, lower boundary conditions, vertical and meridional transport rates, and different chemical mechanisms, especially the treatment of O2 photolysis in the Schumann-Runge (SR) bands (175-205 nm). The discrepancy in tropospheric OH concentrations and methane lifetime between WACCM6 and the 1-D model at low pO2 is reduced when absorption from CO2 and H2O in this wavelength region is included in WACCM6. Including scattering in the SR bands may further reduce this difference. Resolving these issues can be accomplished by developing an accurate parametrization for O2 photolysis in the SR bands and then repeating these calculations in the various models.
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Affiliation(s)
- A. Ji
- Department of Geosciences, Penn State University, University Park, PA 16802, USA
| | - J. F. Kasting
- Department of Geosciences, Penn State University, University Park, PA 16802, USA
| | - G. J. Cooke
- School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, UK
| | - D. R. Marsh
- School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, UK
- National Center for Atmospheric Research, Boulder, CO 80301, USA
| | - K. Tsigaridis
- Center for Climate Systems Research, Columbia University, New York, NY 10025, USA
- NASA Goddard Institute for Space Studies, 2880 Broadway, New York, NY 10025, USA
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de Kreij RJB, Davies Wykes MS, Woodward H, Linden PF. Modeling disease transmission in a train carriage using a simple 1D-model. Indoor Air 2022; 32:e13066. [PMID: 35762236 DOI: 10.1111/ina.13066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Revised: 05/15/2022] [Accepted: 05/19/2022] [Indexed: 06/15/2023]
Abstract
Understanding airborne infectious disease transmission on public transport is essential to reducing the risk of infection of passengers and crew members. We propose a new one-dimensional (1D) model that predicts the longitudinal dispersion of airborne contaminants and the risk of disease transmission inside a railway carriage. We compare the results of this 1D-model to the predictions of a model that assumes the carriage is fully mixed. The 1D-model is validated using measurements of controlled carbon-dioxide experiments conducted in a full-scale railway carriage. We use our results to provide novel insights into the impact of various strategies to reduce the risk of airborne transmission on public transport.
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Affiliation(s)
- Rick J B de Kreij
- Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of Cambridge, Cambridge, UK
| | | | - Huw Woodward
- Centre for Environmental Policy, Imperial College London, London, UK
| | - Paul F Linden
- Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of Cambridge, Cambridge, UK
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Pan Q, Wang R, Reglin B, Fang L, Yan J, Cai G, Kuebler WM, Pries AR, Ning G. Pulse wave velocity in the microcirculation reflects both vascular compliance and resistance: Insights from computational approaches. Microcirculation 2018; 25:e12458. [PMID: 29729094 DOI: 10.1111/micc.12458] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Accepted: 04/26/2018] [Indexed: 01/22/2023]
Abstract
OBJECTIVE PWV is the speed of pulse wave propagation through the circulatory system. mPWV emerges as a novel indicator of hypertension, yet it remains unclear how different vascular properties affect mPWV. We aim to identify the biomechanical determinants of mPWV. METHODS A 1D model was used to simulate PWV in a rat mesenteric microvascular network and, for comparison, in a human macrovascular arterial network. Sensitivity analysis was performed to assess the relationship between PWV and vascular compliance and resistance. RESULTS The 1D model enabled adequate simulation of PWV in both micro- and macrovascular networks. Simulated arterial PWV changed as a function of vascular compliance but not resistance, in that arterial PWV varied at a rate of 0.30 m/s and -6.18 × 10-3 m/s per 10% increase in vascular compliance and resistance, respectively. In contrast, mPWV depended on both vascular compliance and resistance, as it varied at a rate of 2.79 and -2.64 cm/s per 10% increase in the respective parameters. CONCLUSIONS The present study identifies vascular compliance and resistance in microvascular networks as critical determinants of mPWV. We anticipate that mPWV can be utilized as an effective indicator for the assessment of microvascular biomechanical properties.
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Affiliation(s)
- Qing Pan
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
| | - Ruofan Wang
- Key Laboratory of Biomedical Engineering of MOE, Department of Biomedical Engineering, Zhejiang University, Hangzhou, China
| | - Bettina Reglin
- Institute of Physiology, Charité Universitätsmedizin Berlin, Berlin, Germany
| | - Luping Fang
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
| | - Jing Yan
- Department of ICU, Zhejiang Hospital, Hangzhou, China
| | - Guolong Cai
- Department of ICU, Zhejiang Hospital, Hangzhou, China
| | - Wolfgang M Kuebler
- Institute of Physiology, Charité Universitätsmedizin Berlin, Berlin, Germany
| | - Axel R Pries
- Institute of Physiology, Charité Universitätsmedizin Berlin, Berlin, Germany.,Deutsches Herzzentrum Berlin, Berlin, Germany
| | - Gangmin Ning
- Key Laboratory of Biomedical Engineering of MOE, Department of Biomedical Engineering, Zhejiang University, Hangzhou, China
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Mynard JP, Valen-Sendstad K. A unified method for estimating pressure losses at vascular junctions. Int J Numer Method Biomed Eng 2015; 31:e02717. [PMID: 25833463 DOI: 10.1002/cnm.2717] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2015] [Revised: 03/18/2015] [Accepted: 03/20/2015] [Indexed: 06/04/2023]
Abstract
In reduced-order (0D/1D) blood or respiratory flow models, pressure losses at junctions are usually neglected. However, these may become important where velocities are high and significant flow redirection occurs. Current methods for estimating losses rely on relatively complex empirical equations that are only valid for specific junction geometries and flow regimes. In pulsatile multi-directional flows, switching between empirical equations upon reversing flow may introduce unrealistic discontinuities in simulated haemodynamic waveforms. Drawing from work by Bassett et al. (SAE Trans 112:565-583, 2003), we therefore developed a unified method (Unified0D) for estimating loss coefficients that can be applied to any junction (i.e. any number of branches at any angle) and any flow regime. Discontinuities in simulated waveforms were avoided by extending Bassett et al.'s control volume-based method to incorporate a 'pseudodatum' supplier branch, an imaginary effective vessel containing all inflow to the junction. Energy exchange between diverging flow streams was also accounted for empirically. The formulation was validated using high resolution computational fluid dynamics in a wide range flow conditions and junction configurations. In a pulsatile 1D simulation exhibiting transitions between four different flow regimes, the new formulation produced smooth transitions in calculated pressure losses.
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Affiliation(s)
- Jonathan P Mynard
- Biomedical Simulation Laboratory, Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, ON, Canada
- Heart Research, Clinical Sciences, Murdoch Childrens Research Institute, Parkville, VIC, Australia
- Department of Paediatrics, University of Melbourne, Parkville, VIC, Australia
| | - Kristian Valen-Sendstad
- Biomedical Simulation Laboratory, Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, ON, Canada
- Center for Biomedical Computing, Simula Research Laboratory, Lysaker, Norway
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Abstract
Controversy exists about whether one-dimensional wave theory can explain the "self-canceling" waves that accompany the diastolic pressure decay and discharge of the arterial reservoir. Although it has been proposed that reservoir and wave effects be treated as separate phenomena, thus avoiding the issue of self-canceling waves, we have argued that reservoir effects are a phenomenological and mathematical subset of wave effects. However, a complete wave-based explanation of self-canceling diastolic expansion (pressure-decreasing) waves has not yet been advanced. These waves are present in the forward and backward components of arterial pressure and flow (P ± and Q ±, respectively), which are calculated by integrating incremental pressure and flow changes (dP ± and dQ ±, respectively). While the integration constants for this calculation have previously been considered arbitrary, we showed that physiologically meaningful constants can be obtained by identifying "undisturbed pressure" as mean circulatory pressure. Using a series of numeric experiments, absolute P ± and Q ± values were shown to represent "wave potential," gradients of which produce propagating wavefronts. With the aid of a "one-dimensional windkessel," we showed how wave theory predicts discharge of the arterial reservoir. Simulated data, along with hemodynamic recordings in seven sheep, suggested that self-canceling diastolic waves arise from repeated and diffuse reflection of the late systolic forward expansion wave throughout the arterial system and at the closed aortic valve, along with progressive leakage of wave potential from the conduit arteries. The combination of wave and wave potential concepts leads to a comprehensive one-dimensional (i.e., wave-based) explanation of arterial hemodynamics, including the diastolic pressure decay.
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Affiliation(s)
- Jonathan P Mynard
- Heart Research, Clinical Sciences, Murdoch Childrens Research Institute, Parkville, Victoria, Australia; and Department of Paediatrics, University of Melbourne, Parkville, Victoria, Australia
| | - Joseph J Smolich
- Heart Research, Clinical Sciences, Murdoch Childrens Research Institute, Parkville, Victoria, Australia; and Department of Paediatrics, University of Melbourne, Parkville, Victoria, Australia
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