Co-Occurrence Patterns Do Not Predict Mutualistic Interactions Between Plant and Butterfly Species

Biotic interactions are crucial for determining the structure and dynamics of communities; however, direct measurement of these interactions can be challenging in terms of time and resources, especially when numerous species are involved. Inferring species interactions from species co-occurrence patterns is increasingly being used; however, recent studies have highlighted some limitations. To our knowledge, no attempt has been made to test the accuracy of the existing methods for detecting mutualistic interactions in terrestrial ecosystems. In this study, we compiled two literature-based, long-term datasets of interactions between butterflies and herbaceous plant species in two regions of Germany and compared them with observational abundance and presence/absence data collected within a year in the same regions. We tested how well the species associations generated by three different co-occurrence analysis methods matched those of empirically measured mutualistic associations using sensitivity and specificity analyses and compared the strength of associations. We also checked whether flower abundance data (instead of plant abundance data) increased the accuracy of the co-occurrence models and validated our results using empirical flower visitation data. The results revealed that, although all methods exhibited low sensitivity, our implementation of the Relative Interaction Intensity index with pairwise null models performed the best, followed by the probabilistic method and Spearman's rank correlation method. However, empirical data showed a significant number of interactions that were not detected using co-occurrence methods. Incorporating flower abundance data did not improve sensitivity but enhanced specificity in one region. Further analysis demonstrated incongruence between the predicted co-occurrence associations and actual interaction strengths, with many pairs exhibiting high interaction strength but low co-occurrence or vice versa. These findings underscore the complexity of ecological dynamics and highlight the limitations of current co-occurrence methods for accurately capturing species interactions.

Functional diversity of ground beetles improved aphid control but did not increase crop yields on European farms

Land-use intensification is often associated with a decline in functional diversity, potentially undermining the provision of ecosystem services. However, how changes in traits affect ecosystem processes remains poorly understood. Variation in trait values among species in a community may drive ecosystem processes. Alternatively, the mass ratio hypothesis proposes that trait values of the dominant species in a local community are related to ecosystem processes. Using data from 159 farms in six European countries, we quantified the impact of local and landscape-level land-use intensity on ground beetles as pest control agents. We then assessed the extent to which functional diversity and community-weighted mean trait values relate to pest control and cereal yield. In addition, we assessed how the responses to land use and the effects of different species on pest control and yield varied with their traits to compare the relative impact of the traits studied. Functional diversity of ground beetles improved aphid removal, but did not translate into higher crop yields. Pest control of aphids was enhanced by a higher proportion of smaller, mobile ground beetles with a preference for the vegetation layer. Smaller, predatory ground beetles in communities improved crop yield. The magnitude of responses to land-use intensification and the effects on pest control and yield were more strongly influenced by body size than other traits. Our study provides evidence that reduced management intensity can improve pest control by supporting small-sized, macropterous ground beetles. In contrast to the claims of ecological intensification, our joint analysis of the direct effects of land use on yield and indirect effects via functional diversity of ground beetles and pest control suggests that ecosystem services by ground beetles cannot compensate for the yield gap due to a reduction in land-use intensity.

A slow-fast trait continuum at the whole community level in relation to land-use intensification

Organismal functional strategies form a continuum from slow- to fast-growing organisms, in response to common drivers such as resource availability and disturbance. However, whether there is synchronisation of these strategies at the entire community level is unclear. Here, we combine trait data for >2800 above- and belowground taxa from 14 trophic guilds spanning a disturbance and resource availability gradient in German grasslands. The results indicate that most guilds consistently respond to these drivers through both direct and trophically mediated effects, resulting in a 'slow-fast' axis at the level of the entire community. Using 15 indicators of carbon and nutrient fluxes, biomass production and decomposition, we also show that fast trait communities are associated with faster rates of ecosystem functioning. These findings demonstrate that 'slow' and 'fast' strategies can be manifested at the level of whole communities, opening new avenues of ecosystem-level functional classification.

Distance functions of carabids in crop fields depend on functional traits, crop type and adjacent habitat: a synthesis

Natural pest and weed regulation are essential for agricultural production, but the spatial distribution of natural enemies within crop fields and its drivers are mostly unknown. Using 28 datasets comprising 1204 study sites across eight Western and Central European countries, we performed a quantitative synthesis of carabid richness, activity densities and functional traits in relation to field edges (i.e. distance functions). We show that distance functions of carabids strongly depend on carabid functional traits, crop type and, to a lesser extent, adjacent non-crop habitats. Richness of both carnivores and granivores, and activity densities of small and granivorous species decreased towards field interiors, whereas the densities of large species increased. We found strong distance decays in maize and vegetables whereas richness and densities remained more stable in cereals, oilseed crops and legumes. We conclude that carabid assemblages in agricultural landscapes are driven by the complex interplay of crop types, adjacent non-crop habitats and further landscape parameters with great potential for targeted agroecological management. In particular, our synthesis indicates that a higher edge-interior ratio can counter the distance decay of carabid richness per field and thus likely benefits natural pest and weed regulation, hence contributing to agricultural sustainability.

Mapping suitable habitat for Nigeria-Cameroon chimpanzees in Kom-Wum Forest Reserve, North-Western Cameroon

Great apes lose suitable habitats required for their reproduction and survival due to human activities across their distribution range in Africa. Little is known about habitat suitability of the Nigeria-Cameroon chimpanzee [Pan troglodytes ellioti (Matschie, 1914)], particularly for populations inhabiting forest reserves in North-West Cameroon. To address this knowledge gap, we employed a common species distribution model (MaxEnt) to map and predict suitable habitats for the Nigeria-Cameroon chimpanzee in Kom-Wum Forest Reserve, North-West Cameroon, based on environmental factors that potentially affect habitat suitability. We related these environmental factors to a dataset of chimpanzee occurrence points recorded during line transect and reconnaissance (recce) surveys in the forest reserve and surrounding forests.  Up to 91% of the study area is unsuitable for chimpanzees. Suitable habitats only represented 9% of the study area, with a high proportion of highly suitable habitats located outside the forest reserve. Elevation, secondary forests density, distance to villages and primary forests density were the most important predictors of habitat suitability for the Nigeria-Cameroon chimpanzee. The probability of chimpanzee occurrence increased with elevation, secondary forest density and distance from villages and roads. Our study provides evidence that suitable chimpanzee habitat in the reserve is degraded, suggesting that efforts to maintain protected areas are insufficient. The reserve management plan needs to be improved to conserve the remaining suitable habitat and to avoid local extinction of this endangered subspecies.

Tool use by Nigeria-Cameroon chimpanzees for driver ant predation in Kom-Wum Forest Reserve, North-West Region Cameroon

Chimpanzees feed on driver ants (Dorylus sp.) using different tools and predation techniques that vary among populations and can be affected by availability of ant species as well as ecological and social-learning factors. At the Kom-Wum Forest Reserve (KWFR) in Cameroon, we investigated tool use behavior in Nigerian-Cameroon chimpanzees (Pan troglodytes ellioti), examining the characteristics of tools used in driver ant predation, looking for possible seasonal patterns and comparing our results to those from other study sites. We recovered 83 tools along line transects and recces (reconnaissance) during two seasons. We found that chimpanzees used tools with blunting and dirty ends (possible digging and probing tools) and tools without (dipping tools), in driver ant predation. Tools with dirty ends tended to be thicker (N = 52), and thinner tools were less likely to have dirt (N = 31). Tools recovered in the wet season (N = 62), were significantly shorter and thicker than those recovered in the dry season (N = 21). Furthermore, driver ant tools recovered at KWFR are on average the longest yet recorded insect dipping tools for chimpanzees comparable to those used in North Uele. We found no evidence of nut-cracking, tool use for honey bee nor termite consumption and did not observe the potential prey remains in chimpanzee faeces despite their presence in the reserve. Our results suggest that seasonality significantly contributes to a divergence in the form of tools selected for driver ant predation.

Fertilization Rapidly Alters the Feeding Activity of Grassland Soil Mesofauna Independent of Management History

Nitrogen fertilization of permanent grasslands affects soil fauna communities by modifying their taxonomic composition, population dynamics and feeding activity. However, it is not well understood if the edaphic fauna adapts to these external inputs so that the immediate response to fertilizer application depends on the long-term nutrient management strategy. We performed a field experiment in permanent grasslands under agricultural management in three regions across Germany. We used experimental fertilization with an organic plant-sourced fertilizer along a long-term nutrient management gradient to study the immediate and long-term effects of fertilization and their interdependence on the taxonomic composition and feeding activity of the soil mesofauna (Nematoda, Oribatida, and Collembola). Sampling season, soil properties, vegetation structure, and geographic location were considered as additional predictor variables to reflect heterogeneity in environmental conditions. The taxonomic composition, richness and total abundance of soil mesofauna communities were significantly affected by long-term nutrient management, but not by experimental fertilization. However, N pulses rapidly (within days) reduced the feeding activity estimated with bait-lamina strips independent of long-term nutrient management strategies. Experimental addition of organic plant-sourced fertilizer may have led to a rapid build-up of microbial biomass, providing alternative food sources for the soil mesofauna and causing a shift away from the bait-lamina substrate. Our study indicates that community changes associated with the long-term nutrient management regime in permanent grasslands do not alter the strong functional response of the soil mesofauna to N pulses. There is an urgent need to develop nutrient management strategies for permanent grasslands that take into account both the conservation of the edaphic faunal community and changes of ecosystem functions caused by rapid responses of the soil mesofauna to fertilizer inputs.

The Evolution of Ecological Diversity in Acidobacteria

Acidobacteria occur in a large variety of ecosystems worldwide and are particularly abundant and highly diverse in soils. In spite of their diversity, only few species have been characterized to date which makes Acidobacteria one of the most poorly understood phyla among the domain Bacteria. We used a culture-independent niche modeling approach to elucidate ecological adaptations and their evolution for 4,154 operational taxonomic units (OTUs) of Acidobacteria across 150 different, comprehensively characterized grassland soils in Germany. Using the relative abundances of their 16S rRNA gene transcripts, the responses of active OTUs along gradients of 41 environmental variables were modeled using hierarchical logistic regression (HOF), which allowed to determine values for optimum activity for each variable (niche optima). By linking 16S rRNA transcripts to the phylogeny of full 16S rRNA gene sequences, we could trace the evolution of the different ecological adaptations during the diversification of Acidobacteria. This approach revealed a pronounced ecological diversification even among acidobacterial sister clades. Although the evolution of habitat adaptation was mainly cladogenic, it was disrupted by recurrent events of convergent evolution that resulted in frequent habitat switching within individual clades. Our findings indicate that the high diversity of soil acidobacterial communities is largely sustained by differential habitat adaptation even at the level of closely related species. A comparison of niche optima of individual OTUs with the phenotypic properties of their cultivated representatives showed that our niche modeling approach (1) correctly predicts those physiological properties that have been determined for cultivated species of Acidobacteria but (2) also provides ample information on ecological adaptations that cannot be inferred from standard taxonomic descriptions of bacterial isolates. These novel information on specific adaptations of not-yet-cultivated Acidobacteria can therefore guide future cultivation trials and likely will increase their cultivation success.

Trophic niche but not abundance of Collembola and Oribatida changes with drought and farming system

Higher frequencies of summer droughts are predicted to change soil conditions in the future affecting soil fauna communities and their biotic interactions. In agroecosystems drought effects on soil biota may be modulated by different management practices that alter the availability of different food resources. Recent studies on the effect of drought on soil microarthropods focused on measures of abundance and diversity. We here additionally investigated shifts in trophic niches of Collembola and Oribatida as indicated by stable isotope analysis (¹³C and ¹⁵N). We simulated short-term summer drought by excluding 65% of the ambient precipitation in conventionally and organically managed winter wheat fields on the DOK trial in Switzerland. Stable isotope values suggest that plant litter and root exudates were the most important resources for Collembola (Isotoma caerulea, Isotomurus maculatus and Orchesella villosa) and older plant material and microorganisms for Oribatida (Scheloribates laevigatus and Tectocepheus sarekensis). Drought treatment and farming systems did not affect abundances of the studied species. However, isotope values of some species increased in organically managed fields indicating a higher proportion of microorganisms in their diet. Trophic niche size, a measure of both isotope values combined, decreased with drought and under organic farming in some species presumably due to favored use of plants as basal resource instead of algae and microorganisms. Overall, our results suggest that the flexible usage of resources may buffer effects of drought and management practices on the abundance of microarthropods in agricultural systems.

Conventional agriculture and not drought alters relationships between soil biota and functions

Soil biodiversity constitutes the biological pillars of ecosystem services provided by soils worldwide. Soil life is threatened by intense agricultural management and shifts in climatic conditions as two important global change drivers which are not often jointly studied under field conditions. We addressed the effects of experimental short-term drought over the wheat growing season on soil organisms and ecosystem functions under organic and conventional farming in a Swiss long term trial. Our results suggest that activity and community metrics are suitable indicators for drought stress while microbial communities primarily responded to agricultural practices. Importantly, we found a significant loss of multiple pairwise positive and negative relationships between soil biota and process-related variables in response to conventional farming, but not in response to experimental drought. These results suggest a considerable weakening of the contribution of soil biota to ecosystem functions under long-term conventional agriculture. Independent of the farming system, experimental and seasonal (ambient) drought conditions directly affected soil biota and activity. A higher soil water content during early and intermediate stages of the growing season and a high number of significant relationships between soil biota to ecosystem functions suggest that organic farming provides a buffer against drought effects.

The World Spider Trait database: a centralized global open repository for curated data on spider traits

Spiders are a highly diversified group of arthropods and play an important role in terrestrial ecosystems as ubiquitous predators, which makes them a suitable group to test a variety of eco-evolutionary hypotheses. For this purpose, knowledge of a diverse range of species traits is required. Until now, data on spider traits have been scattered across thousands of publications produced for over two centuries and written in diverse languages. To facilitate access to such data, we developed an online database for archiving and accessing spider traits at a global scale. The database has been designed to accommodate a great variety of traits (e.g. ecological, behavioural and morphological) measured at individual, species or higher taxonomic levels. Records are accompanied by extensive metadata (e.g. location and method). The database is curated by an expert team, regularly updated and open to any user. A future goal of the growing database is to include all published and unpublished data on spider traits provided by experts worldwide and to facilitate broad cross-taxon assays in functional ecology and comparative biology. Database URL:https://spidertraits.sci.muni.cz/.

Environmental and anthropogenic effects on the nesting patterns of Nigeria-Cameroon chimpanzees in North-West Cameroon

Environmental conditions and human activity influence the selection of nest sites by chimpanzees and may have serious conservation implications. We examined the characteristics of nesting trees preferred by chimpanzees, investigated the effect of vegetation composition and topography on nest site locations and seasonality on nesting heights of chimpanzees, and verified the effect of predator occurrence and human activity on the nesting behavior of the Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) in Kom-Wum Forest Reserve (KWFR) and surrounding unprotected forest in Cameroon. We recorded 923 nests, 502 signs of human activity, and 646 nesting trees along line transects and recces (reconnaissance) for two seasons. We found that chimpanzees constructed more arboreal nests on tall primary trees with high lowest branch height and large diameter at breast height. Moreover, they oriented their nests within trees in the slope direction when the nesting trees were located on slopes. Additionally, the occurrence of chimpanzee nests was positively related to increasing elevation and slope and decreased with distance to primary forest. In contrast, the number of nests increased with distance to secondary forest, open land, and villages, and nesting height was not influenced by seasons. While we recorded no signs of large nocturnal chimpanzee predators at nesting trees, we found signs of hunting activity at nesting locations. Nesting high in trees is likely a way of avoiding hunting, while nest orientation within trees in slope direction shortens escape routes from human hunters. Our findings suggest that chimpanzees select safe trees (tall trees with high lowest branch height) located in nesting areas (primary forest, high elevation, and steep slopes) that are not easily accessible by humans. Therefore, conservation efforts should focus on protecting primary forests at high elevation and steep slopes and reducing human impact.

Soil microarthropods respond differently to simulated drought in organic and conventional farming systems

In Central Europe, summer droughts are increasing in frequency which threatens production and biodiversity in agroecosystems. The potential of different farming systems to mitigate detrimental drought effects on soil animals is largely unknown. We investigated the effects of simulated drought on the abundance and community composition of soil microarthropods (Collembola and Oribatida and Meso-, Pro-, and Astigmata) in winter wheat fields under long-term conventional and organic farming in the DOK trial, Switzerland. We simulated drought by excluding 65% of the ambient precipitation during the wheat-growing season from March to June 2017. The abundance of Collembola and Oribatida declined more consistently in conventionally managed fields compared to organically managed fields under simulated drought. The abundance of Collembola as well as Meso-, Pro- and Astigmata, but not the abundance of Oribatida, increased in deeper soil layers due to simulated drought, suggesting vertical migration as a drought avoidance strategy. The species composition of Oribatida communities, but not of Collembola communities, differed significantly between drought treatments and between farming systems. Soil carbon content was a major factor structuring Oribatida communities. Our results suggest that organic farming buffers negative effects of drought on soil microarthropods, presumably due to higher soil carbon content and associated higher soil moisture and improved soil structure. This potential of organic farming systems to mitigate consequences of future droughts on soil biodiversity is promising and needs further exploration across larger climatic and spatial scales and should be extended to other groups of soil biota.

Contrasting responses of above- and belowground diversity to multiple components of land-use intensity

Land-use intensification is a major driver of biodiversity loss. However, understanding how different components of land use drive biodiversity loss requires the investigation of multiple trophic levels across spatial scales. Using data from 150 agricultural grasslands in central Europe, we assess the influence of multiple components of local- and landscape-level land use on more than 4,000 above- and belowground taxa, spanning 20 trophic groups. Plot-level land-use intensity is strongly and negatively associated with aboveground trophic groups, but positively or not associated with belowground trophic groups. Meanwhile, both above- and belowground trophic groups respond to landscape-level land use, but to different drivers: aboveground diversity of grasslands is promoted by diverse surrounding land-cover, while belowground diversity is positively related to a high permanent forest cover in the surrounding landscape. These results highlight a role of landscape-level land use in shaping belowground communities, and suggest that revised agroecosystem management strategies are needed to conserve whole-ecosystem biodiversity.

Global data on earthworm abundance, biomass, diversity and corresponding environmental properties

Earthworms are an important soil taxon as ecosystem engineers, providing a variety of crucial ecosystem functions and services. Little is known about their diversity and distribution at large spatial scales, despite the availability of considerable amounts of local-scale data. Earthworm diversity data, obtained from the primary literature or provided directly by authors, were collated with information on site locations, including coordinates, habitat cover, and soil properties. Datasets were required, at a minimum, to include abundance or biomass of earthworms at a site. Where possible, site-level species lists were included, as well as the abundance and biomass of individual species and ecological groups. This global dataset contains 10,840 sites, with 184 species, from 60 countries and all continents except Antarctica. The data were obtained from 182 published articles, published between 1973 and 2017, and 17 unpublished datasets. Amalgamating data into a single global database will assist researchers in investigating and answering a wide variety of pressing questions, for example, jointly assessing aboveground and belowground biodiversity distributions and drivers of biodiversity change.

Disturbance by invasive pathogenic fungus alters arthropod predator-prey food-webs in ash plantations

According to the disturbance-succession theory, natural disturbances support biodiversity and are expected to increase the complexity of food-webs in forest ecosystems by opening canopies and creating a heterogeneous environment. However, a limited number of studies have investigated the impact of disturbance by invasive pathogenic species and succession on arthropod predator-prey food-webs in forest ecosystems. Hymenoscyphus fraxineus is a pathogenic fungus of ash trees that is invasive in Europe and causes massive dieback, mainly of the common ash Fraxinus excelsior across its native range. Here we investigated how this pathogenic fungus affects food-webs of web-building spiders and their prey in understorey vegetation of ash plantations. In 23 young and middle-aged ash plantations that were distributed along a gradient of infestation by H. fraxineus (29%-86% infestation), we measured the vegetation structure (canopy openness, shrub coverage, herb/grass coverage), the trait composition of local spider communities (web type, body size), the prey availability and the prey intercepted by spider webs. We then evaluated the multivariate prey composition (prey type, body size) and network properties. Hymenoscyphus fraxineus opened the ash tree canopy, which resulted in denser shrub coverage. The dense shrub vegetation changed the composition of web types in local spider communities and increasing fungus infestation resulted in reduced mean body size of spiders. Infestation by H. fraxineus reduced the availability of predaceous Coleoptera and increased the availability of herbivorous Coleoptera as potential prey. The mean body size of captured prey and the per capita capture rates of most prey groups decreased with increasing fungus infestation. Hymenoscyphus fraxineus infestation indirectly reduced the complexity in bipartite networks and the trophic functional complementarity in local web-building spider communities. The plantation age affected the vegetation structure but did not affect the studied food-webs. Forest disturbance by the invasive pathogen affected four trophic levels (plant-herbivore-coleopteran intermediate predator-top predator web-building spiders) and, contrary to the disturbance-succession theory, disturbance by the fungus simplified the web-building spider-prey food-webs. The results support the view that H. fraxineus represents a threat to the biodiversity and ecosystem functioning in the simplified ecosystems of ash plantations.

Human Activity and Forest Degradation Threaten Populations of the Nigeria–Cameroon Chimpanzee (Pan troglodytes ellioti) in Western Cameroon

Increased human activities such as commodity-led deforestation, extension of agriculture, urbanization, and wildfires are major drivers of forest loss worldwide. In Cameroon, these activities cause a loss of suitable primate habitat and could ultimately threaten the survival of chimpanzees (Pan troglodytes). We derived independent estimates of the population size of the Endangered Nigeria–Cameroon chimpanzee (Pan troglodytes ellioti) in Kom-Wum Forest Reserve, Cameroon, and surrounding unprotected forest areas through 1) direct observations, 2) camera trapping, 3) distance sampling, 4) marked nest counts, and 5) standing crop nest counts. In addition, we georeferenced signs of chimpanzee and human activity along line transects. We used a generalized linear mixed model to predict the occurrence of chimpanzees in response to edge length (measured as the perimeter of core forest patches), core area of forest patches (measured as area of forest patches beyond an edge width of 100 m), habitat perforation (measured as the perimeter of nonforested landscape within core forest patches), patch size(measured as area of forest patches), and forest cover. Chimpanzee density estimates ranged from 0.1 (direct observation) to 0.9 (distance sampling) individuals km−2 depending on estimation method with a mean nest group size of 7 ± 5.4 (SD). The mean encounter rate for signs of chimpanzee activity was significantly higher in mature forests (2.3 signs km−1) than in secondary forests (0.3 signs km−1) and above 1000 m elevation (4.0 signs km−1) than below 1000 m (1.0 signs km−1). The mean encounter rate for signs of human activity was significantly higher in secondary (8.0 signs km−1) than in mature forests (0.9 signs km−1). Secondary forests, habitat perforation, and edge length had a significant negative effect on the occurrence of chimpanzee signs. Overall, human activity and forest degradation affected the number of observed chimpanzee signs negatively. Regular antipoaching patrols and reforestation programs in degraded areas could potentially reduce threats to populations of endangered species and may increase suitable habitat area.

Characterisation of Metarhizium majus (Hypocreales: Clavicipitaceae) isolated from the Western Cape Province, South Africa

Entomopathogenic fungi (EPF) are important soil-dwelling entomopathogens, which can be used as biological control agents against pest insects. EPF are capable of causing lethal epizootics in pest insect populations in agroecosystems. During a survey of the orchard soil at an organic farm, different EPF species were collected and identified to species level, using both morphological and molecular techniques. The EPF were trapped from soil samples taken from an apricot orchard. The traps, which were baited in the laboratory, used susceptible host insects, including the last-instar larvae of Galleria mellonella (wax moth larvae) and Tenebrio molitor (mealworm larvae). The potential pathogenicity of the local Metarhizium majus isolate was tested and verified using susceptible laboratory-reared last-instar T. molitor larvae. The identification of the M. majus isolated from South African soil was verified using both morphological and molecular techniques. The occurrence of M. majus in the South African soil environment had not previously been reported.