Genetic and phenotypic trends in canine hip dysplasia in the German population of German shepherd dogs

Phenotypic and genetic trends were examined in 157,455 German shepherd dogs of the German population born between 1985 and 2003 which were Xrayed for canine hip dysplasia (CHD). A subset of 40,270 dogs born between 1998 and 2003 was examined for which information was available on age at examination and X-raying veterinary practitioner. Relative breeding values were predicted using best linear unbiased prediction methods (BLUP) and Gibbs Sampling. There was an almost linear and significant decline in both phenotypic and genetic trends for CHD scores (scale 1 to 5 for CHD free to severe CHD) over a period of 19 years, with b = -0.021 +/- 0.002, and b = -1.69 +/- 0.05, respectively. After introduction in 1999 of a selection scheme based on relative breeding values (RBVs, mean 100, standard deviation 20) of a linear animal model, phenotypic and genetic trends declined less than before 1999, with b = -0.019 +/- 0.011 and b = -1.43 +/- 0.29. Analysis of the effects of RBVs of parental combinations among sires and dams on the percentage of non-affected progeny showed that lower RBVs were associated with a higher percentage of non-affected progeny than were higher RBVs. In addition, it was also shown that selection procedures based on RBVs are more efficient than selection schemes based on phenotypic records of parents. When the maternal RBV was above 100, the proportion of non-affected progeny was between 10% and 20% lower than when the maternal RBV was below or equal to 100. There was a significant relationship between higher inbreeding coefficients and higher RBVs of the animal.

Genetic variability in Hanoverian warmblood horses using pedigree analysis

A data set constituting a total of 310,109 Hanoverian warmblood horses was analyzed to ascertain the genetic variability, coefficients of inbreeding, and gene contributions of foreign populations. The reference population contained all Hanoverian horses born from 1980 to 2000. In addition, Hanoverian stallions born from 1980 to 1995 and Hanoverian breeding mares from the birth years 1980 to 1995 with registered foals were analyzed for the same genetic parameters. The average complete generation equivalent was approximately 8.43 for the reference population. The mean coefficient of inbreeding was 1.33, 1.19, and 1.29% for the reference population, stallions, and breeding mares, respectively. The effective number of founders was largest in stallions (364.3) and smallest in the reference population (244.9). The ratio between the effective number of founders and the effective number of ancestors was 3.15 for the reference population, 3.25 for the stallions, and 3.06 for the breeding mares. The effective population size in the Hanoverian warmblood reference population was 372.34. English Thoroughbreds contributed nearly 35% of the genes to the Hanoverian reference population and even slightly greater contributions (39%) to the stallions. Trakehner and Arab horses contributed approximately 8 and 2.7%, respectively, to the Hanoverian gene pool. The most important male ancestors were Aldermann I from the A/E line, Fling from the F/W line, and Absatz from the Trakehner line, whereas the breeding mare Costane had the greatest contribution to the reference population, stallions, and breeding mares. From 1996 onward, the stallions Weltmeyer and Donnerhall had the largest genetic impact on the Hanoverian horse population.

Evidence of a new leukemia inhibitory factor-associated genetic marker for litter size in a synthetic pig line

The association of a diallelic polymorphism in the leukemia inhibitory factor (LIF) gene with reproductive, growth, and carcass traits was studied in a German synthetic pig line. The diallelic SNP has been located in the 3'-untranslated region of the third exon of the porcine LIF gene. Information on 955 litter records from 273 genotyped sows was used in the analyses with respect to the number of piglets born alive. To identify possible pleiotropic marker effects, the growth and carcass traits ADG and backfat thickness were tested for associations with the SNP within the LIF gene in this population. At the LIF locus, the allele frequencies were 0.27 for the A allele and 0.73 for the B allele. There was an indication of an additive effect on the number of piglets born alive, and a significant dominance effect of the B allele was observed for first, second, and third to 10th parities (P = 0.044). The dominance effect for the first parity amounted to -0.73 +/- 0.36 (P = 0.047). No associations were detected between the marker alleles and the growth and carcass traits.

Entwicklung eines Web-basierten Meldesystems für kongenitale Anomalien beim Rind und Übersicht über die in 15 Monaten gemeldeten Fälle

Gegenstand und Ziel: Entwicklung eines Web-basierten Meldesystems für kongenitale Anomalien beim Rind, um diese landesweit zu erfassen und deren Ursachen aufzuklären. Material und Methoden: Das Web-basierte System zur Meldung von Missbildungen beim Rind ist für alle interessierte Personen, wie Landwirte, Tierärzte und Zuchtorganisationen, unter der URL http://www.tiho-hannover.de/einricht/zucht/anomalien/rind/index.htm zugänglich. Häufig vorkommende Anomalien wurden kurz beschrieben und mit Bildmaterial veranschaulicht. Der Fragebogen enthält Angaben zur Herkunft des Tieres und zur Art der Missbildung. Das System ist unabhängig von einer Organisation oder einem auf einzelne Länder oder Bezirke begrenzten Landeskontrollverband verfügbar. Es bietet die Möglichkeit, sofort persönlichen Kontakt zu dem Untersucher herzustellen. Zudem können weitere Informationen, wie z. B. digitale Fotos oder Röntgenbilder, schnell ausgetauscht werden. Da die Meldungen häufig bereits kurz nach der Geburt der Kälber erfolgten, konnten viele Fälle weitergehenden klinischen, molekulargenetischen und pathomorphologischen Untersuchungen unterzogen werden. Ergebnisse: Von August 2004 bis November 2005 gingen insgesamt 109 Meldungen ein, wovon 46 über die Rinder-Union West und 11 über die Kliniken der Stiftung Tierärztliche Hochschule Hannover an das Institut für Tierzucht und Vererbungsforschung erfolgten. Eine detaillierte Untersuchung der missgebildeten Kälber fand in 17 Fällen statt. Am häufigsten wurden Missbildungen des Verdauungssystems (19%), des Kopfes (18%), der Wirbelsäule (17%) und der Gliedmaßen (14%) registriert. Schlussfolgerungen und klinische Relevanz: Ein weiterer Ausbau des bisherigen Systems mit einem verbesserten Rückfluss von Informationen an den Tierbesitzer und Tierarzt sowie aktuellen Informationen zu den kongenitalen Anomalien erscheint angebracht und erfolgversprechend, um das Meldesystem zu verbessern und weiter zu verbreiten. Auf diese Weise können Ursachen für kongenitale Anomalien beim Rind besser aufgeklärt werden.

Fat status in Lohmann Silver and Lohmann tradition laying hens kept in modified small group housing systems, small group housing systems, furnished cages and an aviary system

The influence of different housing systems on adiposis of liver, abdomen and heart was evaluated in 670 Lohmann Silver (LS) and 240 Lohmann Tradition (LT) laying hens during two trials. Examinations took place in the 3rd, 6th, 9th and 12th laying month. In addition, serum concentration of triglycerides (TRI) was analysed. Housing systems included in this study were a furnished cage system (Aviplus (AP)), a small group housing system (Eurovent 625a-EU (EV)), with perches on the same (first trial) and on different levels (second trial, MEV), and an aviary system (Voliere Natura (AV)). In both trials, a significantly lower fat status of abdomen and liver could be observed in hens housed in AV. Consistently in both trials, body weight and housing system had the largest influence on fat status of liver, abdomen and heart. Scores of fat status of liver and abdomen in EV and MEV were in between of those observed in AV and AP, while heart fat status did not differ among housing systems. With an increasing macroscopic fat status of the liver, liver weight and TRI concentration significantly increased. Different perch positions in MEV did not have a significant influence on fat status in layers.

Phylogenetic relationships of German heavy draught horse breeds inferred from mitochondrial DNA D-loop variation

We analysed a 610-bp mitochondrial (mt)DNA D-loop fragment in a sample of German draught horse breeds and compared the polymorphic sites with sequences from Arabian, Hanoverian, Exmoor, Icelandic, Sorraia and Przewalski's Horses as well as with Suffolk, Shire and Belgian horses. In a total of 65 horses, 70 polymorphic sites representing 47 haplotypes were observed. The average percentage of polymorphic sites was 11.5% for the mtDNA fragment analysed. In the nine different draught horse breeds including South German, Mecklenburg, Saxon Thuringa coldblood, Rhenisch German, Schleswig Draught Horse, Black Forest Horse, Shire, Suffolk and Belgian, 61 polymorphic sites and 24 haplotypes were found. The phylogenetic analysis failed to show monophyletic groups for the draught horses. The analysis indicated that the draught horse populations investigated consist of diverse genetic groups with respect to their maternal lineage.

Evaluation of canine heat-shock transcription factor 4 as a candidate for primary cataracts in English Cocker Spaniels and wire-haired Kromfohrlanders

Canine heat-shock transcription factor 4 (HSF4) was evaluated as a candidate for primary cataracts in English Cocker Spaniels (ECS) and wire-haired Kromfohrlanders (KFL). We sequenced exon 9 and its flanking regions of the HSF4 gene in ECS and KFL but were not able to detect a previously reported insertion mutation associated with primary cataracts in Staffordshire Bull Terriers and Boston Terriers. Another single nucleotide polymorphism (LOC489766:g.3243A>G) in intron 9 was identified and included in linkage and association tests together with two flanking microsatellites. Linkage and association tests with primary cataracts in ECS and KFL were not significant. Therefore, we could not verify that the mutation in exon 9 of canine HSF4 gene is causative for primary cataracts in ECS and wire-haired KFL.

Analysis of systematic and genetic effects on the prevalence of primary cataract, persistent pupillary membrane and distichiasis in the two color variants of English Cocker Spaniels in Germany

Genetic parameters were estimated for prevalences of primary cataract (CAT), persistent pupillary membrane (PPM) and distichiasis (DIST) in 615 single-colored and 617 multi-colored English Cocker Spaniels (ECS) bred in the German kennel club for Spaniels (Jagdspaniel-Klub e.V.). CAT or CAT diagnosed in dogs up to three and a half years of age (early-onset cataract, CAT-early) and CAT diagnosed in dogs over three and a half years of age (late-onset cataract, CAT-late), PPM and DIST were included as binary traits in multivariate genetic analyses. Heritabilities on the underlying liability scale were 0.15 for CAT, 0.34 for CAT-early, 0.13 for CAT-late, 0.46 for PPM, and 0.62 for DIST in single-colored ECS and 0.06 for CAT, 0.13 for CAT-early, 0.14 for CAT-late, 0.10 for PPM, and 0.61 for DIST in multi-colored ECS. There were indications for a different genetic basis of CAT-early and CAT-late in single-colored ECS as genetic correlations were close to zero. In multi-colored ECS, a similar tendency for CAT-early and CAT-late could be observed.

Review of genetic aspects of radiological alterations in the navicular bone of the horse

Navicular disease or podotrochlosis has long been known to cause forelimb lameness in horses. It had been proposed that the development of podotrochlosis has similarities to the human osteoarthritis (OA) complex. Alterations of the navicular bone can be made visible early in life only on the basis of radiographs. Reports on the prevalences of navicular disease indicate that radiological alterations in the navicular bone are present in different warmblood populations at frequencies of between 14.9% and 87.6%. Genetic factors play an important role in the development of the radiological signs. Estimates of heritability using animal threshold models range from h2 = 0.09 to h2 = 0.40. Estimated additive genetic correlations between radiological changes in the navicular bone and other orthopaedic health traits indicated that they mostly develop genetically independently of each other. There was a negative genetic correlation between radiological changes in the navicular bone and the number of tournament entries and placings. It has also been shown that reduction of radiological changes of navicular bones and improvement of breeding values for performance of riding horses can be achieved if selection is based on breeding values for these traits simultaneously. An optimised markerset was developed to detect quantitative trait loci (QTL) for pathologic changes in the navicular bone of Hanoverian warmblood horses. The horse genome was scanned using 214 highly polymorphic microsatellites chromosome-wide significant QTL were located on equine chromosomes (ECA) 2, 3, 4, 10, and 26. Genome-wide significant QTL were on ECA2 and on ECA10. Unravelling QTL associated with navicular disease will enhance selection progress for a healthy limb constitution in horses.

Molecular characterization of the porcine <i>DNAL4</i> gene

Abstract. The DNAL4 (dynein, axonemal, light polypeptide 4) gene encodes a light chain of dynein. Dyneins are motor proteins that contribute to axonal transport. Cloning and characterization of the porcine DNAL4 revealed a conserved organization with respect to the human ortholog. The porcine DNAL4 gene consists of 4 exons and codes for a peptide of 105 amino acids. The porcine DNAL4 gene is located on SSC5p15. Analysis of the naturally occurring variation of the DNAL4 gene in pigs from the Piétrain und Duroc breeds revealed five SNPs in non-coding regions of the gene.

Foot pad health, plumage condition, integument and claw length of Lohmann Silver laying hens kept in small aviary housing systems, furnished cages and an aviary housing system

Abstract. In the 3rd, 6th, 9th and 12th laying month, foot pad health, plumage condition, integument and claw length were evaluated in 432 Lohmann Silver laying hens kept in three different housing systems: a small aviary housing system (Eurovent 625a-EU, EV) with different perch levels, a furnished cage system (Aviplus, AP) and an aviary (Voliere Natura, AV). Foot health was scored for hyperkeratosis and lesions on a scale from 1 (normal) to 5 or 4 (severe). Plumage condition was assessed with scores from 1 (worst) to 4 (best) for different body regions. Integument was assessed for lesions and claw length of the middle toe was measured. Mild foot pad hyperkeratosis was the most frequent finding in hens of all housing systems. Sole pad hyperkeratosis was less frequent in AP and occurred more often in EV and AV. Significantly more often hyperkeratosis in the region between toe and claw was observed in AP. Toe pad lesions and lesions between toe and claw were scored lowest in AV and highest in AP. An aggravation of plumage in the course of the laying period was observed in all hens. Hens showed a significantly better total plumage condition in AP compared to EV. Within housing system, group size had a significant influence on plumage condition. Plumage was better in smaller groups. Lesions of the integument were rarely detected. Claws were significantly shortest in AP, longer in AV and longest in EV. Perch design in EV was not significant for all traits except for comp lesions.

Mapping the horse genome and its impact on equine genomics for identification of genes for monogenic and complex traits – a review

Abstract. Since the beginning of investigation in the horse genome in the early nineties, there has been a great progress, especially during the last five years. At the beginning the exploration of monogenic hereditary diseases was one of the main aims, and the causal mutations of several diseases in the horse have been unravelled. The inheritance of coat colours has been explored very detailed, and there exist gene tests for different coat colours. Information about coat colours and inherited diseases is very important for the breeders and helps avoiding the appearance of lethal genetic factors or undesirable diseases. The most important achievements of horse genome analysis were well-developed linkage, radiation hybrid and cytogenetic genome maps including more than 2950 loci. These maps support comparative analysis of equine hereditary diseases. The present known gene mutations for five diseases in horses have human homologs. Studies on multifactorial diseases such as osteochondrosis and navicular bone disease and on fertility and temperament are underway. At the moment, the whole equine genome is sequenced as it has been done for the human genome and also for other animal genomes. Horse breeding will greatly benefit from identification of QTL for multifactorial traits and gene mutations for congenital anomalies, diseases and performance traits.

Assignment of the <i>TYK2</i> gene to equine chromosome 7q12-q13 (Brief report)

Abstract. Tyrosine kinase 2 (TYK2) is a member of the janus kinase gene family and encodes an 1187 amino acid protein. All four members of the janus kinase family JAK1, JAK2, JAK3, and TYK2 associate with various cytokine receptors and mediate the signal transduction by tyrosine phosphorylation of downstream targets (YAMOAKA et al., 2004). Studies with tyk2 deficient mice demonstrated impairment of interferon α/β signaling (KARAGHIOSOFF et al., 2003). Mutations in the murine tyk2 gene are associated with increased susceptibility to infectious and autoimmune diseases (SHAW et al., 2003). The human TYK2 gene consists of 25 exons spanning 30,003 bp on human chromosome 19p13.2 starting at 10,322,209 bp. The objective of this study was to determine the chromosomal location of TYK2 in the horse by FISH and RH mapping.

Estimation of genetic parameters and prediction of breeding values for multivariate threshold and continuous data in a simulated horse population using Gibbs sampling and residual maximum likelihood

Simulated horse data were used to compare multivariate estimation of genetic parameters and prediction of breeding values (BV) for categorical, continuous and molecular genetic data using linear animal models via residual maximum likelihood (REML) and best linear unbiased prediction (BLUP) and mixed linear-threshold animal models via Gibbs sampling (GS). Simulation included additive genetic values, residuals and fixed effects for one continuous trait, liabilities of four binary traits, and quantitative trait locus (QTL) effects and genetic markers with different recombination rates and polymorphism information content for one of the liabilities. Analysed data sets differed in the number of animals with trait records and availability of genetic marker information. Consideration of genetic marker information in the model resulted in marked overestimation of the heritability of the QTL trait. If information on 10,000 or 5,000 animals was used, bias of heritabilities and additive genetic correlations was mostly smaller, correlation between true and predicted BV was always higher and identification of genetically superior and inferior animals was - with regard to the moderately heritable traits, in many cases - more reliable with GS than with REML/BLUP. If information on only 1,000 animals was used, neither GS nor REML/BLUP produced genetic parameter estimates with relative bias <or=25% and BV correlation >50% for all traits. Selection decisions for binary traits should rather be based on GS than on REML/BLUP breeding values.

Genetic parameters for the prevalence of osteochondrosis in the limb joints of South German Coldblood horses

Heritabilities were estimated for osteochondrosis (OC) in fetlock and hock joints and palmar/plantar osseous fragments in fetlock joints of South German Coldblood (SGC) horses using Residual Maximum Likelihood (REML) under a linear animal model. The analyses were based on the results of a standardized radiographic examination of 167 SGC horses with a mean age of 14 months. The heritabilities linearly estimated and transformed onto the liability scale were for OC in fetlock joints 0.16 and for OC in hock joints 0.04. Considering fetlock and hock OC together, results in a heritability of 0.17. Palmar/plantar osseus fragments of the fetlock joints showed a heritability of 0.48. We concluded that there is most likely a genetic component in the variation of the development of osteochondrosis in fetlock and hock joints as well as for palmar/plantar osseus fragments of fetlock joints of the investigated population of SGC horses.

Analysis of the Canine mdr1?1? Mutation in the Dog Breed Elo

A deletion mutation in the canine multidrug resistance gene, MDR1, is associated with drug sensitivity. This was shown for several purebred dog breeds from the Collie lineage such as the Collie (rough-coated and smooth-coated), the Australian Shepherd and the Old English sheepdog. To determine whether the mdr1-1Delta mutation could be found in the newly bred German dog breed Elo which is based amongst other breeds on Old English sheepdogs, 177 blood samples representative for the Elo breed were collected. After DNA extraction, a polymerase chain reaction-based method with subsequent polyacrylamide gel electrophoresis was used for detection of the mdr1-1Delta mutation. The mdr1-1Delta allele was not observed in the Elos investigated. The probability that the mdr1-1Delta allele originated in the Old English sheepdog breed is segregating in the Elo population was estimated at 3.68 x 10(-17).

Insulin-like growth factor type-1 receptor down-regulation associated with dwarfism in Holstein calves

Perturbations in endocrine functions can impact normal growth. Endocrine traits were studied in three dwarf calves exhibiting retarded but proportionate growth and four phenotypically normal half-siblings, sired by the same bull, and four unrelated control calves. Plasma 3,5,3'-triiodothyronine and thyroxine concentrations in dwarfs and half-siblings were in the physiological range and responded normally to injected thyroid-releasing hormone. Plasma glucagon concentrations were different (dwarfs, controls>half-siblings; P<0.05). Plasma growth hormone (GH), insulin-like growth factor-1 (IGF-1) and insulin concentrations in the three groups during an 8-h period were similar, but integrated GH concentrations (areas under concentration curves) were different (dwarfs>controls, P<0.02; half-siblings>controls, P=0.08). Responses of GH to xylazine and to a GH-releasing-factor analogue were similar in dwarfs and half-siblings. Relative gene expression of IGF-1, IGF-2, GH receptor (GHR), insulin receptor, IGF-1 type-1 and -2 receptors (IGF-1R, IGF-2R), and IGF binding proteins were measured in liver and anconeus muscle. GHR mRNA levels were different in liver (dwarfs<controls, P<0.002; dwarfs<half-siblings, P=0.06; half-siblings<controls, P=0.08) but not in muscle. IGF-1R mRNA abundance in liver in half-siblings and controls was 2.4- and 2.5-fold higher (P=0.003 and P=0.001, respectively) and in muscle tissue was 2.3- and 1.8-fold higher (P=0.01 and P=0.08, respectively) than in dwarfs. Hepatic IGF-1R protein levels (Western blots) in muscle were 2.5-fold higher (P<0.05) and in liver and muscle (quantitative immunohistochemistry) were higher (P<0.02 and P<0.07, respectively) in half-siblings than in dwarfs. The reduced presence of IGF-1R may have been the underlying cause of dwarfism in studied calves.

Genome-wide search for markers associated with osteochondrosis in Hanoverian warmblood horses

A genome-wide scan was performed to detect quantitative trait loci (QTLs) for osteochondrosis (OC) and osteochondrosis dissecans (OCD) in horses. The marker set comprised 260 microsatellites. We collected data from 211 Hanoverian warmblood horses consisting of 14 paternal half-sib families. Traits used were OC (fetlock and/or hock joints affected), OCD (fetlock and/or hock joints affected), fetlock OC, fetlock OCD, hock OC, and hock OCD. The first genome scan included 172 microsatellite markers. In a second step 88 additional markers were chosen to refine putative QTLs found in the first scan. Genome-wide significant QTLs were located on equine chromosomes 2, 4, 5, and 16. QTLs for fetlock OC and hock OC partly overlapped on the same chromosomes, indicating that these traits may be genetically related. QTLs reached the chromosome-wide significance level on eight different equine chromosomes: 2, 3, 4, 5, 15, 16, 19, and 21. This whole-genome scan was a first step toward the identification of candidate genome regions harboring genes responsible for equine OC. Further investigations are necessary to refine the map positions of the QTLs already identified for OC.

Mechanisms of Regulation of Litter Size in Pigs on the Genome Level

Improvement in litter size has become of great interest in pig industry as good fecundity is directly related to a sow's productive life. Genetic regulation of litter size is complex and the main component traits so far defined are ovulation rate, embryonic survival, uterus capacity, foetal survival and pre-weaning losses. Improvements using concepts of the quantitative genetics let expect only slow genetic progress due to its low heritability of approximately 0.09 for number of piglets born alive. Marker assisted selection allows to dissect litter size in its component traits and using molecular genetic markers for the components of litter size traits promises more progress and advantages in optimum balancing of the different physiological mechanisms influencing litter size. In this review, efforts being made to unravel the genetic determinants of litter size are accounted and discussed. For litter size traits, more than 50 quantitative trait loci (QTL) were mapped and in more than 12 candidate genes associations confirmed. The number of useful candidate genes is much larger as shown by expression profiles and in addition, much more QTL can be assumed. These functional genomic approaches, both QTL mapping and candidate gene analysis, have to be merged for a better understanding of a wider application across different pig breeds and lines. Newly developed tools based on microarray techniques comprising DNA variants or expressed tags of many genes or even the whole genome appear useful for in depth understanding of the genetics of litter size in pigs.