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Meng S, Lee D, Cantos A. Abstract No. 167 Interventional radiology procedure volume changes during the COVID-19 pandemic. J Vasc Interv Radiol 2021. [PMCID: PMC8079610 DOI: 10.1016/j.jvir.2021.03.173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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Cho S, Lee D, Han B, Lee J, Hong J, Chung J, Lee D, Na J. 463 Automated atopic dermatitis severity assessment based on convolutional neural networks. J Invest Dermatol 2021. [DOI: 10.1016/j.jid.2021.02.486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Meng S, Chengazi H, Butani D, Lee D, Cantos A. Abstract No. 129 Pilot initiative of tube labeling in interventional radiology as a means to reduce medical errors and improve overall understanding among referring services. J Vasc Interv Radiol 2021. [DOI: 10.1016/j.jvir.2021.03.135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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54
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Lee Y, Lee J, Oh SM, Lee D, Kahng B. Homological percolation transitions in growing simplicial complexes. Chaos 2021; 31:041102. [PMID: 34251264 DOI: 10.1063/5.0047608] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Accepted: 03/29/2021] [Indexed: 06/13/2023]
Abstract
Simplicial complex (SC) representation is an elegant mathematical framework for representing the effect of complexes or groups with higher-order interactions in a variety of complex systems ranging from brain networks to social relationships. Here, we explore the homological percolation transitions (HPTs) of growing SCs using empirical datasets and model studies. The HPTs are determined by the first and second Betti numbers, which indicate the appearance of one- and two-dimensional macroscopic-scale homological cycles and cavities, respectively. A minimal SC model with two essential factors, namely, growth and preferential attachment, is proposed to model social coauthorship relationships. This model successfully reproduces the HPTs and determines the transition types as an infinite-order Berezinskii-Kosterlitz-Thouless type but with different critical exponents. In contrast to the Kahle localization observed in static random SCs, the first Betti number continues to increase even after the second Betti number appears. This delocalization is found to stem from the two aforementioned factors and arises when the merging rate of two-dimensional simplexes is less than the birth rate of isolated simplexes. Our results can provide a topological insight into the maturing steps of complex networks such as social and biological networks.
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Affiliation(s)
- Y Lee
- CCSS, CTP, Department of Physics and Astronomy, Seoul National University, Seoul 08826, South Korea
| | - J Lee
- CCSS, CTP, Department of Physics and Astronomy, Seoul National University, Seoul 08826, South Korea
| | - S M Oh
- CCSS, CTP, Department of Physics and Astronomy, Seoul National University, Seoul 08826, South Korea
| | - D Lee
- CCSS, CTP, Department of Physics and Astronomy, Seoul National University, Seoul 08826, South Korea
| | - B Kahng
- CCSS, CTP, Department of Physics and Astronomy, Seoul National University, Seoul 08826, South Korea
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Brahmbhatt D, Vishram-Nielsen J, Lee D, Alhussein M, Moayedi Y, Posada JD, Ross H, Rakowski H, Rao V, Billia F. Continuous-Flow Left Ventricular Assist Device Support for Patients with Hypertrophic Cardiomyopathy: A Single Centre Experience. J Heart Lung Transplant 2021. [DOI: 10.1016/j.healun.2021.01.542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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Schultz L, Sullivan J, Derstine B, Ross B, Dykes J, Lee D, Wang S, Almond C. Skeletal Muscle Index Z-score —A Novel Method to Evaluate Malnutrition Level in Pediatric Heart Failure Patients? J Heart Lung Transplant 2021. [DOI: 10.1016/j.healun.2021.01.586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Lee D, Yoo B. Cellulose derivatives agglomerated in a fluidized bed: Physical, rheological, and structural properties. Int J Biol Macromol 2021; 181:232-240. [PMID: 33775758 DOI: 10.1016/j.ijbiomac.2021.03.142] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 03/22/2021] [Accepted: 03/23/2021] [Indexed: 11/26/2022]
Abstract
Understanding the agglomeration of cellulose derivatives is crucial for the production of instant gum-based food thickeners. In the present study, physical, rheological, and structural properties of agglomerated water-soluble cellulose gums (CGs), such as carboxymethylcellulose (CMC), hydroxypropylmethylcellulose (HPMC), and methylcellulose (MC), were investigated at different concentrations of maltodextrin (MD) as a binder for fluidized-bed agglomeration. Among the CG agglomerates in the presence of MD, CMC exhibited better flowability and lower cohesiveness, showing lower Carr index and Hausner ratio values. The MC agglomerates with 20% MD exhibited higher porosity than the other CGs due to the size enlargement of MC particles, which was confirmed via scanning electron microscopy images and size distribution profiles. The dynamic moduli of the CG agglomerates were significantly decreased by the addition of MD and also decreased with increasing MD concentration. The tan δ values of the agglomerates increased with increasing MD concentration, indicating the enhancement of their viscous properties. These results suggest that the physical, rheological, and structural properties of cellulose derivatives with different types of CG can be greatly influenced by their agglomerate growths during fluidized-bed agglomeration of particles with the different concentrations of MD binder.
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Affiliation(s)
- D Lee
- Department of Food Science and Biotechnology, Dongguk University-Seoul, Goyang, Gyeonggi 410-820, Republic of Korea
| | - B Yoo
- Department of Food Science and Biotechnology, Dongguk University-Seoul, Goyang, Gyeonggi 410-820, Republic of Korea.
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Yang J, Kim H, Shin K, Nam Y, Heo HJ, Kim GH, Hwang BY, Kim J, Woo S, Choi HS, Ko DS, Lee D, Kim YH. Molecular insights into the development of hepatic metastases in colorectal cancer: a metastasis prediction study. Eur Rev Med Pharmacol Sci 2020; 24:12701-12708. [PMID: 33378017 DOI: 10.26355/eurrev_202012_24168] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Colorectal cancer is presently the third most commonly diagnosed cancer in the United States. In this study, we identified molecular differences between hepatic and non-hepatic metastases in colorectal cancer and evaluated their prognostic significance. MATERIALS AND METHODS We downloaded primary data from the NCBI Gene Expression Omnibus (GSE6988, GSE62321, GSE50760, and GSE28722). To identify the molecular differences, we used the Significance Analysis of Microarray method. We selected nine prognostic genes (SYTL2, PTPLAD1, CDS1, RNF138, PIGR, WDR78, MYO7B, TSPAN3, and ATP5F1) with hepatic metastasis prediction score in colorectal cancer (hereafter referred to as LASSO Score). We confirmed the prognostic significance of the LASSO Score by using Kaplan-Meier survival analysis, multivariate analysis, the time-dependent area under the curve (AUC) of Uno's C-index, and the AUC of the receiver operating characteristic curve at 1-5 years. RESULTS Survival analysis revealed that a high LASSO Score is associated with a poor prognosis in colorectal cancer patients with hepatic metastases (p = 0). Analysis of C-indices and AUC values from the receiver operating characteristic curve further supported this prediction by the LASSO Score. Multivariate analysis confirmed the prognostic significance of the LASSO Score (p = 1.13e-06). CONCLUSIONS This study reveals the biological mechanisms underlying hepatic metastases in colorectal cancer and will help in developing targeted therapies for colorectal cancer.
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Affiliation(s)
- J Yang
- Department of Premedicine, School of Medicine, Pusan National University, Yangsan, South Korea.
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Maki JN, Gruel D, McKinney C, Ravine MA, Morales M, Lee D, Willson R, Copley-Woods D, Valvo M, Goodsall T, McGuire J, Sellar RG, Schaffner JA, Caplinger MA, Shamah JM, Johnson AE, Ansari H, Singh K, Litwin T, Deen R, Culver A, Ruoff N, Petrizzo D, Kessler D, Basset C, Estlin T, Alibay F, Nelessen A, Algermissen S. The Mars 2020 Engineering Cameras and Microphone on the Perseverance Rover: A Next-Generation Imaging System for Mars Exploration. Space Sci Rev 2020; 216:137. [PMID: 33268910 PMCID: PMC7686239 DOI: 10.1007/s11214-020-00765-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Accepted: 11/09/2020] [Indexed: 05/16/2023]
Abstract
The Mars 2020 Perseverance rover is equipped with a next-generation engineering camera imaging system that represents an upgrade over previous Mars rover missions. These upgrades will improve the operational capabilities of the rover with an emphasis on drive planning, robotic arm operation, instrument operations, sample caching activities, and documentation of key events during entry, descent, and landing (EDL). There are a total of 16 cameras in the Perseverance engineering imaging system, including 9 cameras for surface operations and 7 cameras for EDL documentation. There are 3 types of cameras designed for surface operations: Navigation cameras (Navcams, quantity 2), Hazard Avoidance Cameras (Hazcams, quantity 6), and Cachecam (quantity 1). The Navcams will acquire color stereo images of the surface with a 96 ∘ × 73 ∘ field of view at 0.33 mrad/pixel. The Hazcams will acquire color stereo images of the surface with a 136 ∘ × 102 ∘ at 0.46 mrad/pixel. The Cachecam, a new camera type, will acquire images of Martian material inside the sample tubes during caching operations at a spatial scale of 12.5 microns/pixel. There are 5 types of EDL documentation cameras: The Parachute Uplook Cameras (PUCs, quantity 3), the Descent stage Downlook Camera (DDC, quantity 1), the Rover Uplook Camera (RUC, quantity 1), the Rover Descent Camera (RDC, quantity 1), and the Lander Vision System (LVS) Camera (LCAM, quantity 1). The PUCs are mounted on the parachute support structure and will acquire video of the parachute deployment event as part of a system to characterize parachute performance. The DDC is attached to the descent stage and pointed downward, it will characterize vehicle dynamics by capturing video of the rover as it descends from the skycrane. The rover-mounted RUC, attached to the rover and looking upward, will capture similar video of the skycrane from the vantage point of the rover and will also acquire video of the descent stage flyaway event. The RDC, attached to the rover and looking downward, will document plume dynamics by imaging the Martian surface before, during, and after rover touchdown. The LCAM, mounted to the bottom of the rover chassis and pointed downward, will acquire 90 ∘ × 90 ∘ FOV images during the parachute descent phase of EDL as input to an onboard map localization by the Lander Vision System (LVS). The rover also carries a microphone, mounted externally on the rover chassis, to capture acoustic signatures during and after EDL. The Perseverance rover launched from Earth on July 30th, 2020, and touchdown on Mars is scheduled for February 18th, 2021.
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Affiliation(s)
- J. N. Maki
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - D. Gruel
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - C. McKinney
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | | | - M. Morales
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - D. Lee
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - R. Willson
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - D. Copley-Woods
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - M. Valvo
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - T. Goodsall
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - J. McGuire
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - R. G. Sellar
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | | | | | | | - A. E. Johnson
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - H. Ansari
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - K. Singh
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - T. Litwin
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - R. Deen
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - A. Culver
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - N. Ruoff
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - D. Petrizzo
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - D. Kessler
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - C. Basset
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - T. Estlin
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - F. Alibay
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - A. Nelessen
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - S. Algermissen
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
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Lee D, Kim J. Non-alcoholic fatty liver disease fibrosis score predicts cardiovascular mortality in post percutaneous coronary intervention patients: a 5-years results from observational registry. Eur Heart J 2020. [DOI: 10.1093/ehjci/ehaa946.1513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Background and aims
The nonalcoholic fatty liver disease fibrosis score (NFS) is comprised of metabolic risk indicators that may accurately predict residual cardiovascular risk in patients with CAD.
Method
This is a nested case control study of the post PCI registry from single tertiary hospital. Among 5589 patients who underwent PCI from 2010 through 2014, previously diagnosed 1510 NAFLD patients and 296 consecutive NAFLD patients who had undergone both PCI and ultrasonography of abdomen within 1 year between the tests were enrolled. (median age, 64y (IQR 55–73)). We applied the NFS to the patients at baseline, using validated NFS cut-offs and 201 patients with higher NFS, defined as NFS >0.67 at PCI, were 1:1 matched with controls, based on propensity scores for higher NFS >0.67.
Results
Higher NFS (NFS >0.67) was more prevalent in patients with left ventricle (LV) dysfuction (LVEF at PCI <40%) than in those without (81.0% vs 33.6%, p<0.001). Baseline higher NFS was significantly associated with LV dysfunction (adjusted OR 1.86, 95% CI 1.36 to 2.55, p<0.001), and baseline higher NFS and persistent higher NFS at 1 year after PCI were independent predictor of a 5-years CV death, after adjustment for LVEF (adjusted HR 1.42, 95% CI 1.03 to 1.95, p=0.023; adjusted HR 1.52, 95% CI 1.08 to 2.64, p=0.033).
Conclusion
With a longitudinal assessment of the association between NAFLD status by NFS and the risk of CV death, we found post-PCI patients with persistent higher NFS were at higher risk of CV death compared with those without.
KM rates of CV death according to NFS
Funding Acknowledgement
Type of funding source: None
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Affiliation(s)
- D Lee
- Sanbon Hospital, Wonkwang University College of Medicine, Gunpo, Korea (Republic of)
| | - J Kim
- Dongguk University hospital, Department of Internal Medicine, Ilsan, Korea (Republic of)
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Simmonds R, Lee D, Hayhurst E. Erratum to "Mobile phones as fomites for potential pathogens in hospitals: microbiome analysis reveals hidden contaminants" [J Hosp Infect 104 (2020) 207-213]. J Hosp Infect 2020; 106:635. [PMID: 33032829 DOI: 10.1016/j.jhin.2020.06.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- R Simmonds
- Applied Biology Research Group, The University of South Wales, Pontypridd, UK
| | - D Lee
- Applied Biology Research Group, The University of South Wales, Pontypridd, UK
| | - E Hayhurst
- Applied Biology Research Group, The University of South Wales, Pontypridd, UK.
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Chan J, Mann A, Chan C, Lee D, Rohatgi A, Abel M, Argueta C, Kapp D. Human papillomavirus vaccination in heterosexual and sexual minority individuals in the United States. Gynecol Oncol 2020. [DOI: 10.1016/j.ygyno.2020.05.529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Lee D, Booth GL, Ray JG, Ling V, Feig DS. Undiagnosed type 2 diabetes during pregnancy is associated with increased perinatal mortality: a large population-based cohort study in Ontario, Canada. Diabet Med 2020; 37:1696-1704. [PMID: 31994233 DOI: 10.1111/dme.14250] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 01/23/2020] [Indexed: 01/11/2023]
Abstract
AIM To compare perinatal outcomes in women with undiagnosed diabetes with gestational diabetes alone, pre-existing diabetes and women without diabetes, and to identify risk factors which distinguish them from women with gestational diabetes alone. METHODS This population-based cohort study included administrative data on all women who gave birth in Ontario, Canada, during 2002-2015. Maternal/neonatal outcomes were compared across groups using logistic regression, adjusting for confounders. A nested case control study compared women with undiagnosed type 2 diabetes with women with gestational diabetes alone to determine risk factors that would help identify these women. RESULTS Among 995 990 women, 68 163 had gestational diabetes (6.8%) and, of those women with gestational diabetes,1772 had undiagnosed type 2 diabetes (2.6%). Those with undiagnosed type 2 diabetes were more likely to be older, from a lower income area, have parity > 3 and BMI ≥ 30 kg/m2 compared with gestational diabetes alone. Infants had a higher risk of perinatal mortality (OR 2.3 [1.6-3.4]), preterm birth (OR 2.6 [2.3-2.9]), congenital anomalies (OR 2.1 [1.7-2.5]), neonatal intensive care unit admission (OR 3.1 [2.8-3.5]) and neonatal hypoglycaemia (OR 406.0 [357-461]), which were similar to women with pre-existing diabetes. The strongest predictive risk factors included early gestational diabetes diagnosis, previous gestational diabetes and chronic hypertension. CONCLUSIONS Women diagnosed with gestational diabetes who develop diabetes within 1 year postpartum are at higher risk of adverse pregnancy outcomes, including perinatal mortality. This highlights the need for earlier diagnosis, preferably pre-pregnancy, and more aggressive treatment and surveillance of suspected type 2 diabetes during pregnancy.
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MESH Headings
- Adolescent
- Adult
- Case-Control Studies
- Cesarean Section/statistics & numerical data
- Cohort Studies
- Congenital Abnormalities/epidemiology
- Diabetes Mellitus, Type 2/epidemiology
- Diabetes, Gestational/epidemiology
- Female
- Fetal Macrosomia/epidemiology
- Humans
- Hyperbilirubinemia, Neonatal/epidemiology
- Hypertension, Pregnancy-Induced/epidemiology
- Hypoglycemia/epidemiology
- Income
- Infant, Newborn
- Infant, Newborn, Diseases/epidemiology
- Intensive Care Units, Neonatal
- Logistic Models
- Maternal Age
- Middle Aged
- Obesity, Maternal/epidemiology
- Ontario/epidemiology
- Parity
- Perinatal Mortality
- Pregnancy
- Pregnancy in Diabetics/epidemiology
- Premature Birth/epidemiology
- Residence Characteristics
- Respiratory Distress Syndrome, Newborn/epidemiology
- Shoulder Dystocia/epidemiology
- Undiagnosed Diseases/epidemiology
- Young Adult
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Affiliation(s)
- D Lee
- Department of Medicine, University of Toronto, Toronto, Ontario, Canada
| | - G L Booth
- Department of Medicine, University of Toronto, Toronto, Ontario, Canada
- Institute of Health Policy, Management, and Evaluation, University of Toronto, Toronto, Ontario, Canada
- ICES, Toronto, Ontario, Canada
- Keenan Research Centre, Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Ontario, Canada
- Division of Endocrinology and Metabolism, St. Michael's Hospital, Toronto, Ontario, Canada
| | - J G Ray
- Department of Medicine, University of Toronto, Toronto, Ontario, Canada
- Institute of Health Policy, Management, and Evaluation, University of Toronto, Toronto, Ontario, Canada
- ICES, Toronto, Ontario, Canada
- Keenan Research Centre, Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Ontario, Canada
| | - V Ling
- ICES, Toronto, Ontario, Canada
| | - D S Feig
- Department of Medicine, University of Toronto, Toronto, Ontario, Canada
- Institute of Health Policy, Management, and Evaluation, University of Toronto, Toronto, Ontario, Canada
- ICES, Toronto, Ontario, Canada
- Division of Endocrinology and Metabolism, Department of Medicine, Sinai Health System, Mount Sinai Hospital, Toronto, Ontario, Canada
- Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Mount Sinai Hospital, Toronto, Ontario, Canada
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Raslan I, Rashid M, Austin P, Lee J, Atzema C, Farkouh M, Lee D, Ha A. THE LONG-TERM PROGNOSTIC IMPACT OF NEW-ONSET POSTOPERATIVE ATRIAL FIBRILLATION IN OLDER PATIENTS UNDERGOING CORONARY ARTERY BYPASS GRAFT SURGERY: A POPULATION-BASED ANALYSIS. Can J Cardiol 2020. [DOI: 10.1016/j.cjca.2020.07.113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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Mariappan L, Veeratterapillay J, Cresti N, Verrill M, Lee D, Todd R. North East Experience on Pertuzumab, Trastuzumab and Docetaxel in Metastatic Breast Cancer. Clin Oncol (R Coll Radiol) 2020. [DOI: 10.1016/j.clon.2020.02.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Ha M, Son YR, Kim J, Park SM, Hong CM, Choi D, Kang W, Kim JH, Lee KJ, Park D, Han ME, Oh SO, Lee D, Kim YH. TEK is a novel prognostic marker for clear cell renal cell carcinoma. Eur Rev Med Pharmacol Sci 2020; 23:1451-1458. [PMID: 30840266 DOI: 10.26355/eurrev_201902_17102] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Clear cell renal cell carcinoma (ccRCC) is the most common type of kidney cancer. However, effective therapeutics for ccRCC are lacking. Novel biomarkers could provide critical information when determining prognoses for patients with ccRCC. In this study, we sought to determine if the expression of receptor tyrosine kinase (TEK) could be a potential novel prognostic biomarker for ccRCC. TEK, originally identified as an endothelial cell-specific receptor, plays an important role in the modulation of vasculogenesis and remodeling. Altered TEK expression has been observed in tumor tissues (e.g., oral squamous cell carcinomas, leukemia) and breast, gastric and thyroid cancers. However, the role of TEK in ccRCC remains unknown. PATIENTS AND METHODS Differential TEK expression between non-metastatic (stage M0) and metastatic (stage M1) ccRCC patient cohorts was determined from The Cancer Genome Atlas (TCGA) and the International Cancer Genome Consortium (ICGC). Furthermore, TEK expression was assessed as a prognostic factor using the time-dependent area under the curve (AUC) of Uno's C-index, the AUC value of the receiver operating characteristics (ROC) at 5 years, Kaplan-Meier survival curves and multivariate analyses. RESULTS A Kaplan-Meier curve analysis revealed that the downregulation of TEK expression was associated with a poor prognosis for patients with ccRCC with good discrimination (p<0.0001 and p=0.0044 for the TGCA and ICGC cohorts, respectively). Analyses of C-indices and receiver operating characteristic AUC values further support this discriminative ability. Moreover, multivariate analyses showed the prognostic significance of TEK expression levels (p<0.001). CONCLUSIONS Although additional clinical investigations will be needed, our results suggest that TEK is a potential biomarker for ccRCC.
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Affiliation(s)
- M Ha
- Department of Anatomy, Pusan National University School of Medicine, Yangsan, Republic of Korea.
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Kyung Y, Kim T, Ham S, Lee W, Lim B, Lee D, Chae H, You D, Song C, Jeong I, Hong B, Hong J, Ahn H, Kim N, Kim C. Fully automated evaluation of contact surface area between renal cell carcinoma and kidney parenchyma using deep convolutional neural net. EUR UROL SUPPL 2020. [DOI: 10.1016/s2666-1683(20)33953-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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Abdollah F, Shahait M, Dalela D, Kelly J, Vapiwala N, Lee D. External validation of genomic classifier based risk-stratification tool to identify candidates for adjuvant radiation therapy in patients with prostate cancer. EUR UROL SUPPL 2020. [DOI: 10.1016/s2666-1683(20)33285-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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Babbush K, Waldman A, Ghias M, Nosrati A, Pacific K, Lee D, Cohen S. 449 Characterizing a cohort of pediatric patients with hidradenitis suppurativa. J Invest Dermatol 2020. [DOI: 10.1016/j.jid.2020.03.457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Dang E, Man G, Lee D, Zhang J, Li Z, Mauro T, Elias P, Man M. 209 Inducible nitric oxide synthase regulates epidermal permeability barrier homeostasis. J Invest Dermatol 2020. [DOI: 10.1016/j.jid.2020.03.214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Lee W, Park M, Jun J, Lee J, Lee S, Chae H, Lee D, Lim B, Kyung Y, Alsowayan Y, You D, Song C, Jeong I, Hong J, Ahn H, Kim C, Hong B. Clinical outcomes and optimal strategies in primary female urethral cancer - a retrospective analysis at a single institute. EUR UROL SUPPL 2020. [DOI: 10.1016/s2666-1683(20)32942-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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72
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Kyung Y, Lim B, Lee W, Lee D, Lee S, Chae H, You D, Song C, Jeong I, Hong B, Hong J, Ahn H, Kim C, Kim S, Jung Y, Jeong J. Changes in metabolic syndrome associated with prostate change over a 5 year period: Multicenter study. EUR UROL SUPPL 2020. [DOI: 10.1016/s2666-1683(20)33353-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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Wang ZJ, Kim ES, Noh BH, Liang JG, Lee D, Hur YJ, Kim NY, Kim HD. Alteration in brain connectivity in patients with Dravet syndrome after vagus nerve stimulation (VNS): exploration of its effectiveness using graph theory analysis with electroencephalography. J Neural Eng 2020; 17:036014. [PMID: 32380482 DOI: 10.1088/1741-2552/ab914f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
OBJECTIVE Vagus nerve stimulation (VNS) is a nonpharmacologic therapeutic option for patients who have pharmaco-resistant Dravet syndrome (DS). Plentiful efforts have been made for delivering VNS to DS patients, but its effectiveness still requires further verification. We investigated the effectiveness of the VNS treatment of DS patients using brain connectivity analysis with electroencephalography (EEG). APPROACH Twenty pharmaco-resistant DS patients were selected to undergo VNS implantation and classified into responder and non-responder groups after 24 months post-VNS. The effect of VNS between 6 months pre- and 6, 12, and 24 months post-VNS in all patients, responders, and non-responders on four different frequency categories of four brain parameters were compared using resting-state EEG. MAIN RESULTS In alpha and beta bands, all patients showed positive results for characteristic path length (CPL), global efficiency (GE), and transitivity after VNS treatment, and changes in betweenness centrality (BC) were not significant. The difference in transitivity between responders and non-responders is more pronounced than those in CPL and GE are, in both the alpha (p < 0.015) and beta (p < 0.001) bands. There was an obvious change in BC, especially in the alpha band, as the hubs tended to move from frontal lobe to parietal lobe for responders; however, there was no change for the non-responders. SIGNIFICANCE We investigated the alteration in brain connectivity of DS patients in alpha and beta bands during a long-term follow-up and found the responders have a decreased transitivity after the VNS treatment. Moreover, the hubs with high values in the alpha band tended to move from frontal lobe to parietal lobe for responders after VNS treatment.
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Affiliation(s)
- Zhi-Ji Wang
- RFIC Center, Kwangwoon University, 447-1 Wolgye-Dong, Nowon-Ku, Seoul 139-701, Republic of Korea. These authors contributed equally to this work
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Waddle AE, Kurth S, Harsh J, Lassonde JM, Lee D, LeBourgeois MK. 0321 Increased Slow-Wave Activity Predicts Slower Processing Speed in Toddlers. Sleep 2020. [DOI: 10.1093/sleep/zsaa056.318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Introduction
Slow-wave activity (SWA) shows an inverted U-shaped time course during development. Specifically, maximal SWA undergoes a posteroanterior shift from 2 to 20 years of age, which may reflect cortical maturation. Previously, we showed that greater slow sigma power during sleep predicted faster reaction time in preschool-aged children. To date, little is known about the relationship between SWA and processing speed (PS), a basic fundament underlying complex cognitive skills in early development.
Methods
This project examined the relationship between SWA and PS in 2.5-3.0-year-old children (n=26, 50% males) via home-based assessments. After a 5-day stabilization sleep schedule, a baseline sleep EEG recording was performed on participants at 4 electrode placements: Fz, Oz, C3, and C4. SWA EEG spectral power was quantified in the 0.75-4.5 Hz rangeduring the first 60 minutes of NREM sleep. PS was obtained as part of a standard cognitive assessment via a computer-based task one hour after waking from a midday nap.
Results
On average, reaction time (PS) was 2111 ± 08 ms and SWA was 856.4 ± 300.7 µV2/Hz. Increased SWA in the occipital region was predictive of a longer reaction time and therefore slower PS (r = 0.44, p = 0.03). This relationship showed differences between sexes, suggesting that females (r = 0.26, p = 0.07) may show a stronger association between SWA in the occipital brain region and PS than males (r = 0.09, p = 0.33).
Conclusion
Interestingly, these findings contradict our hypothesis based on previous data with older children indicating that greater SWA was associated with more advanced behavioral and cognitive skills. This discrepancy may reflect the stark individual differences present within this rapidly maturing age group.
Support
Research support from NIH R01-MH086566 to MKL.
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Affiliation(s)
- A E Waddle
- University of Colorado Boulder, Boulder, CO
| | - S Kurth
- University Hospital Zurich, Zurich, SWITZERLAND
| | - J Harsh
- University of Colorado Boulder, Boulder, CO
| | | | - D Lee
- University of Colorado Boulder, Boulder, CO
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Lee A, Choi Y, Lee J, Lee J, Lee D. RS-1 enhanced the efficiency of somatic cell reprogramming via activation of RAD51 in somatic cell nuclear transfer. Cytotherapy 2020. [DOI: 10.1016/j.jcyt.2020.03.208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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76
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Jung S, Lee J, Lee S, Shim S, Lee D. Gene expression profiling and genetic stability of human somatic cell nuclear transfer embryonic stem cell-derived mesenchymal progenitor cells produced by two different protocols. Cytotherapy 2020. [DOI: 10.1016/j.jcyt.2020.03.045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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77
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Morita PP, Rocha AS, Shaker G, Lee D, Wei J, Fong B, Thatte A, Karimi A, Xu L, Ma A, Wong A, Boger J. Comparative Analysis of Gait Speed Estimation Using Wideband and Narrowband Radars, Thermal Camera, and Motion Tracking Suit Technologies. J Healthc Inform Res 2020; 4:215-237. [PMID: 35415448 PMCID: PMC8982681 DOI: 10.1007/s41666-020-00071-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Revised: 01/17/2020] [Accepted: 01/27/2020] [Indexed: 01/14/2023]
Abstract
AbstractResearch has shown that cognitive and physical functioning of older adults can be reflected in indicators such as walking speed. While changes in cognition, mobility, or health cause changes in gait speed, often gradual variations in walking speed go undetected until severe problems arise. Discrete clinical assessments during clinical consultations often fail to detect changes in day-to-day walking speeds and do not reflect walking speeds in everyday environments, where most of the mobility issues happen. In this paper, we compare four walking speed measurement technologies to a GAITRite mat (gold standard): (1) an ultra wideband radar (covering the band from 3.3 GHz to 10 GHz), (2) a narrow band 24-GHz radar (with a bandwidth of 250 MHz), (3) a perception Neuron Motion Tracking suit, and (4) a thermal camera. Data were collected in parallel using all sensors at the same time for 10 healthy adults for normal and slow walking paces. A comparison of the sensors indicates better performance at lower gait speeds, with offsets (when compared to GAITRite) between 0.1 and 20% for the ultra wideband radar, 1.9 and 17% for the narrowband radar, 0.1 and 38% for the thermal camera, and 1.7 and 38% for the suit. This paper supports the potential of unobtrusive radar-based sensors and thermal camera technologies for ambient autonomous gait speed monitoring for contextual, privacy-preserving monitoring of participants in the community.
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Affiliation(s)
- P. P. Morita
- School of Public Health and Health Systems, University of Waterloo, Waterloo, ON Canada
- Centre for Global eHealth Innovation, Techna Institute, University Health Network, Toronto, ON Canada
- Institute of Health Policy, Management, and Evaluation, University of Toronto, Toronto, ON Canada
- Research Institute for Aging, Waterloo, ON Canada
| | - A. S. Rocha
- School of Public Health and Health Systems, University of Waterloo, Waterloo, ON Canada
- Goiano Federal Institute, Trindade, GO Brazil
| | - G. Shaker
- Research Institute for Aging, Waterloo, ON Canada
- Department of Electrical and Computer Engineering, University of Waterloo, Waterloo, ON Canada
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, ON Canada
- Waterloo Artificial Intelligence Institute, Waterloo, ON Canada
| | - D. Lee
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, ON Canada
| | - J. Wei
- Department of Systems Design Engineering, University of Waterloo, Waterloo, ON Canada
| | - B. Fong
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, ON Canada
| | - A. Thatte
- Department of Systems Design Engineering, University of Waterloo, Waterloo, ON Canada
| | - A. Karimi
- Department of Systems Design Engineering, University of Waterloo, Waterloo, ON Canada
| | - L. Xu
- Department of Systems Design Engineering, University of Waterloo, Waterloo, ON Canada
| | - A. Ma
- Department of Systems Design Engineering, University of Waterloo, Waterloo, ON Canada
| | - A. Wong
- Research Institute for Aging, Waterloo, ON Canada
- Waterloo Artificial Intelligence Institute, Waterloo, ON Canada
- Department of Systems Design Engineering, University of Waterloo, Waterloo, ON Canada
| | - J. Boger
- Research Institute for Aging, Waterloo, ON Canada
- Department of Systems Design Engineering, University of Waterloo, Waterloo, ON Canada
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Schultz L, Sullivan J, Derstine B, Ross B, Dykes J, Lee D, Wang S, Almond C. Skeletal Muscle Index Z-score—A Novel Method to Evaluate Malnutrition Level in Pediatric Heart Failure Patients? J Heart Lung Transplant 2020. [DOI: 10.1016/j.healun.2020.01.1030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
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Oh J, Lee M, Lee D, Choi K, Kim S, Cho M, Lee C. 82 Stage-specific expression of lineage marker genes and pluripotency marker distribution in porcine pre-implantation embryos. Reprod Fertil Dev 2020. [DOI: 10.1071/rdv32n2ab82] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Lineage specification in pre-implantation embryos has been revealed, and it was expedited recently by single cell studies. However, data on expression marker genes and proteins in porcine embryos were still missing. We aimed to investigate the expression and distribution of marker genes and proteins, respectively, in IVF and parthenogenetically activated (PA) embryos. For this, cumulus-free oocytes were co-incubated with sperm in modified Tris-buffered medium (mTBM) for 5h and PA was performed using an electric pulse in activation medium. Following this, the embryos were incubated in porcine zygote medium 3 (PZM3). We first tested gene expression level of lineage candidates (internal control; β-actin). In IVF embryos (30, 25, 20, 15, 10, and 5 embryos pooled on Day 2, 3, 4, 5, 6, and 7; replicated 3 times), trophectoderm (TE)-specific genes (Dab2, Gata3) showed peaks on Day 4-5. Within the 2 genes, Dab2 had an earlier peak than Gata3. Inner cell mass (ICM) marker candidates (Nanog, Sox2, and Hnf4a) had diverse patterns. The Nanog and Sox2 genes had peak expression on Day 3. The Nanog expression dropped gradually, but Sox2 dropped suddenly on Day 4. Otherwise, Hnf4a expressed little in Day 3 and expression was sustained from Day 4 to 7. Primitive endoderm markers showed the highest expression on Day 4. We also checked expression level of ICM markers (Sox2, Oct4, and Nanog) in PA embryos (20, 20, 20, 10, and 5 embryos were pooled in 2, 4, 6-8 cells, morula, early, and late blastocyst stages; replicated 3 times). Expression of markers was similar (the highest in the 6-8-cell stage; at least 7.3-, 4.5-, and 3.7-fold compared with the other stages in Sox2, Oct4, and Nanog). We used analysis of variance and Tukey's test for statistical analysis. Following this, we conducted immunocytochemistry with both IVF and PA embryos (20 in each condition). Primary antibodies were treated overnight at 4°C and appropriate secondary antibodies were treated 1h at room temperature. In the case of IVF, well-known ICM markers (SOX2, OCT4, NANOG, and SOX17) showed restricted distribution in nuclei of ICM cells. However, DAB2 was distributed in the cytoplasm of TE cells. In PA embryos, SOX2 and NANOG distributions were similar to IVF. The OCT4 in ICM cells from morula to early blastocyst was restricted, but not in Day 7 embryos. In conclusion, marker genes showed diverse expression pattern in IVF, but all ICM-specific genes had a similar pattern in PA. Also, ICM marker proteins were restricted in nuclei of ICM cells only except Day 7 PA. Our results provide eye-opening information on marker contribution to lineage specification of porcine embryos.
This work was supported by the National Research Foundation in Korea (NRF) funded by the Ministry of Education (NRF-2017R1D1A1B03032256, NRF-2019R1C1C1004514).
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Lee D, Choi K, Oh J, Kim S, Lee M, Cho M, Lee C. 81 Linoleic acid required for reduction of apoptosis through nuclear transcription factor-kappa B during pig embryo development. Reprod Fertil Dev 2020. [DOI: 10.1071/rdv32n2ab81] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Recent studies suggest that endogenous and exogenous free fatty acids play various important roles in mammalian oocyte and pre-implantation embryo development. Among fatty acids, linoleic acid (LA) has been reported to affect the apoptosis pathway via nuclear transcription factor-kappa B (NF-κB). The transcription factor NF-κB is a key modulator of apoptosis in a variety of cell types, but to date, this specific function of NF-κB has not been demonstrated in porcine pre-implantation embryos. To examine the effect of linoleic acid on invitro-produced parthenogenetic pig embryos, we treated LA by concentration (0, 10, 25, 50, and 100 µM) to identify developmental rate, NF-κB expression, and mRNA level of apoptotic-related genes. In addition, the mechanism was confirmed by examining the protein and mRNA expression of NF-kb and c-jun by immunostaining and quantitative PCR at the blastocyst stage. Linoleic acid had a positive effect on embryo development without toxicity at a certain concentration (25 µM), but toxicity was confirmed at higher (50-100μM) concentrations. Furthermore, it was confirmed that the concentration of NF-κB increased as the treatment concentration of LA increased, which was found to increase even at the concentration at which embryo development decreased. Previous studies have shown that the NF-κB pathway is involved in regulating anti- and pro-apoptotic gene expression. We also investigated the effects of LA on anti- (Bcl-xL, Mcl-1) and pro- (BAX1, TP53, Caspase3) apoptotic genes and NF-κB activation-related genes (RelA, JNK1, JNK2, IL-6) in porcine embryos. We have found that down-regulation of pro-apoptotic gene expression occurs in the LA-treated group. It was also found that Bcl-xL, one of the anti-apoptotic genes, was not affected by LA, which appears to be an effect of IL-6. In contrast, Mcl-1, an anti-apoptotic gene known not to be affected by IL-6, was found to have increased expression mRNA level in LA-treated pig embryos. Furthermore, through double-staining of apoptosis and immunocytochemistry, as the concentration of NF-kB level increases, the nuclear translocation of c-jun, the protein of which was also related with apoptosis, increased gradually depending on the LA concentration. These data could support that porcine embryo can use exogenous LA as a metabolic energy source. The data also demonstrate the important role of NF-kB in porcine early embryo development.
Support was provided by the Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries (IPET) through the Development of High Value-Added Food Technology program funded by the Ministry of Agriculture, Food and Rural Affairs (MAFRA, 118042-03-1-HD020).
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81
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Cook RR, Fulcher JA, Tobin NH, Li F, Lee D, Woodward C, Javanbakht M, Brookmeyer R, Shoptaw S, Bolan R, Aldrovandi GM, Gorbach PM. Combined effects of HIV and obesity on the gastrointestinal microbiome of young men who have sex with men. HIV Med 2019; 21:365-377. [PMID: 31883184 DOI: 10.1111/hiv.12838] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/19/2019] [Indexed: 01/11/2023]
Abstract
OBJECTIVES The prevalence of obesity is rising among people living with HIV, which may synergistically increase inflammation and the risk of associated diseases. Disruption of gut bacterial communities may be one of the key drivers of this inflammation; however, the combined effects of HIV and obesity on the microbiome have not been explored. METHODS This study included 381 men who have sex with men. Thirty-nine were HIV-positive and obese (H+O+), 143 were HIV-positive and nonobese, 64 were HIV-negative and obese, and 135 were HIV-negative and nonobese. Microbiome composition was assessed by targeted sequencing of the V4 region of the 16S ribosomal RNA (rRNA) gene using rectal swab samples. Inverse probability of treatment-weighted marginal structural models were used to investigate differences in microbial composition between groups while controlling for numerous clinical and behavioural confounders. RESULTS Significant variability in microbial composition was explained by the combination of HIV and obesity, over and above each condition alone (R2 for the marginal contribution of the H+/O+ group = 0.008; P = 0.001). H+O+ participants had the highest ratios of Prevotella to Bacteroides, a pro-inflammatory enterotype that has been described in HIV infection and obesity independently. H+O+ participants had lower levels of Bacteroides and Veillonella than all other groups, suggesting a synergistic effect of HIV and obesity on these genera. CONCLUSIONS Our findings support the hypothesis that HIV and obesity act together to disrupt gut microbial communities, which may help explain higher levels of generalized inflammation among people living with both HIV and obesity.
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Affiliation(s)
- R R Cook
- Department of Epidemiology, Fielding School of Public Health at the University of California, Los Angeles, CA, USA
| | - J A Fulcher
- Divison of Infectious Diseases, Department of Medicine, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA.,VA Greater Los Angeles Healthcare System, Los Angeles, CA, USA
| | - N H Tobin
- Division of Infectious Diseases, Department of Pediatrics, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA
| | - F Li
- Division of Infectious Diseases, Department of Pediatrics, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA
| | - D Lee
- Division of Infectious Diseases, Department of Pediatrics, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA
| | - C Woodward
- Division of Infectious Diseases, Department of Pediatrics, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA
| | - M Javanbakht
- Department of Epidemiology, Fielding School of Public Health at the University of California, Los Angeles, CA, USA
| | - R Brookmeyer
- Department of Biostatistics, Fielding School of Public Health at the University of California, Los Angeles, CA, USA
| | - S Shoptaw
- Department of Family Medicine, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA.,Department of Psychiatry and Biobehavioural Science, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA
| | - R Bolan
- Los Angeles LGBT Center, Los Angeles, CA, USA.,Department of Family Medicine, Keck School of Medicine at the University of Southern California, Los Angeles, CA, USA
| | - G M Aldrovandi
- Division of Infectious Diseases, Department of Pediatrics, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA
| | - P M Gorbach
- Department of Epidemiology, Fielding School of Public Health at the University of California, Los Angeles, CA, USA
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Waddle A, LeBourgeois M, Kurth S, Harsh J, Lassonde J, Lee D. The association between slow-wave activity (SWA) and processing speed in toddlers. Sleep Med 2019. [DOI: 10.1016/j.sleep.2019.11.1134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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83
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Bang J, Lee H, Choi H, Lee D, Kim Y, Kim DK. Analysis of the relationship between changes in the auditory brainstem response and prognosis in patients with sudden hearing loss. J Laryngol Otol 2019. [PMID: 31791435 DOI: 10.11735/j.issn.1671-170x.2019.12.b016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
OBJECTIVE To analyse how the auditory brainstem response changes in patients with sudden sensorineural hearing loss. METHOD Data were collected via retrospective medical chart review. RESULTS Forty-three patients were included in this study. The mean latency of auditory brainstem response wave 1 was significantly longer for the affected side than for the unaffected side (p = 0.003). The mean latency of auditory brainstem response wave 1 was significantly shorter, and the mean amplitude of auditory brainstem response wave 1 was significantly larger, in the good response group compared to the poor response group. In forward conditional logistic regression analysis, auditory brainstem response wave 1 latency was an independent predictor of a good response (odds ratio = 34.37, 95 per cent confidence interval = 1.56-757.15, p = 0.025). CONCLUSION In patients with sudden sensorineural hearing loss, the latency of wave 1 of the auditory brainstem response was significantly increased and was related to prognosis.
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Affiliation(s)
- J Bang
- Department of Otolaryngology - Head and Neck Surgery, Daejeon St Mary's Hospital, College of Medicine, Catholic University of Korea, Daejeon, Korea
| | - H Lee
- Department of Otolaryngology - Head and Neck Surgery, Daejeon St Mary's Hospital, College of Medicine, Catholic University of Korea, Daejeon, Korea
| | - H Choi
- Department of Otolaryngology - Head and Neck Surgery, Daejeon St Mary's Hospital, College of Medicine, Catholic University of Korea, Daejeon, Korea
| | - D Lee
- Department of Otolaryngology - Head and Neck Surgery, Daejeon St Mary's Hospital, College of Medicine, Catholic University of Korea, Daejeon, Korea
| | - Y Kim
- Department of Otolaryngology - Head and Neck Surgery, Daejeon St Mary's Hospital, College of Medicine, Catholic University of Korea, Daejeon, Korea
| | - D-K Kim
- Department of Otolaryngology - Head and Neck Surgery, Daejeon St Mary's Hospital, College of Medicine, Catholic University of Korea, Daejeon, Korea
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Liu H, Lee D, McLean K, Leggett D, Hodgkinson P, Fawcett J, Mott R, Stuart K, Pryor D. OC-047: Australian experience of SBRT in early and advanced stage hepatocellular carcinoma. Radiother Oncol 2019. [DOI: 10.1016/s0167-8140(20)30436-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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85
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Konsur E, Lee D, Pazheri F. M153 A PREGNANT FEMALE WITH A HISTORY OF RUPTURED OVARIAN CYST AND HEREDITARY ANGIOEDEMA TYPE III. Ann Allergy Asthma Immunol 2019. [DOI: 10.1016/j.anai.2019.08.153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Abstract
Growth plate cartilage resides near the ends of long bones and is the primary driver of skeletal growth. During growth, both intrinsically and extrinsically generated mechanical stresses act on chondrocytes in the growth plate. Although the role of mechanical stresses in promoting tissue growth and homeostasis has been strongly demonstrated in articular cartilage of the major skeletal joints, effects of stresses on growth plate cartilage and bone growth are not as well established. Here, we review the literature on mechanobiology in growth plate cartilage at macroscopic and microscopic scales, with particular emphasis on comparison of results obtained using different methodological approaches, as well as from whole animal and in vitro experiments. To answer these questions, macroscopic mechanical stimulators have been developed and applied to study mechanobiology of growth plate cartilage and chondrocytes. However, the previous approaches have tested a limited number of stress conditions, and the mechanobiology of a single chondrocyte has not been well studied due to limitations of the macroscopic mechanical stimulators. We explore how microfluidics devices can overcome these limitations and improve current understanding of growth plate chondrocyte mechanobiology. In particular, microfluidic devices can generate multiple stress conditions in a single platform and enable real-time monitoring of metabolism and cellular behavior using optical microscopy. Systematic characterization of the chondrocytes using microfluidics will enhance our understanding of how to use mechanical stresses to control the bone growth and the properties of tissue-engineered growth plate cartilage.
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Affiliation(s)
- D. Lee
- Department of Mechanical and Materials Engineering, University of Nebraska-Lincoln, Lincoln, NE 68588
- Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198
| | - A. Erickson
- Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198
| | - A. T. Dudley
- Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE 68198
- Corresponding Authors:; Tel: +1-402-559-2820. ; Tel: +1-402-472-4313
| | - S. Ryu
- Department of Mechanical and Materials Engineering, University of Nebraska-Lincoln, Lincoln, NE 68588
- Nebraska Center for Materials and Nanoscience, University of Nebraska-Lincoln, Lincoln, NE 68588
- Corresponding Authors:; Tel: +1-402-559-2820. ; Tel: +1-402-472-4313
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Aleem E, Montoya J, Lee D, Finch K, Wai D, Dubois C. A laboratory assay for improved prediction of drug responses in acute myeloid leukaemia cells. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz413.073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Motoa G, Carrillo-Martin I, Chamorro-Pareja N, Haehn D, Mendez J, Wadei H, Hodge D, Lee D, Bosch W, Gonzalez-Estrada A. A007 IMPACT OF PENICILLIN ALLERGY LABEL IN LIVER TRANSPLANT RECIPIENTS DURING TRANSPLANT HOSPITALIZATION. Ann Allergy Asthma Immunol 2019. [DOI: 10.1016/j.anai.2019.08.040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Zielen S, Kuna P, Aberer W, Lassmann S, Pfaar O, Klimek L, Wade A, Kluehr K, Raab J, Wessiepe D, Lee D, Kramer M, Gunawardena K, Higenbottam T, Heath M, Skinner M, de Kam P. Strong dose response after immunotherapy with PQ grass using conjunctival provocation testing. World Allergy Organ J 2019; 12:100075. [PMID: 31709029 PMCID: PMC6831906 DOI: 10.1016/j.waojou.2019.100075] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Revised: 09/19/2019] [Accepted: 09/24/2019] [Indexed: 12/24/2022] Open
Abstract
Background Pollinex Quattro Grass (PQ Grass) is an effective, well-tolerated, short pre-seasonal subcutaneous immunotherapy to treat seasonal allergic rhinoconjunctivitis (SAR) due to grass pollen. In this Phase II study, 4 cumulative doses of PQ Grass and placebo were evaluated to determine its optimal cumulative dose. Methods Patients with grass pollen-induced SAR were randomised to either a cumulative dose of PQ Grass (5100, 14400, 27600 and 35600 SU) or placebo, administered as 6 weekly subcutaneous injections over 31-41 days (EudraCT number 2017-000333-31). Standardized conjunctival provocation tests (CPT) using grass pollen allergen extract were performed at screening, baseline and post-treatment to determine the total symptom score (TSS) assessed approximately 4 weeks after dosing. Three models were pre-defined (Emax, logistic, and linear in log-dose model) to evaluate a dose response relationship. Results In total, 95.5% of the 447 randomized patients received all 6 injections. A highly statistically significant (p < 0.0001), monotonic dose response was observed for all three pre-specified models. All treatment groups showed a statistically significant decrease from baseline in TSS compared to placebo, with the largest decrease observed after 27600 SU (p < 0.0001). The full course of 6 injections was completed by 95.5% of patients. Treatment-emergent adverse events were similar across PQ Grass groups, and mostly mild and transient in nature. Conclusions PQ Grass demonstrated a strong curvilinear dose response in TSS following CPT without compromising its safety profile.
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Key Words
- ADRs, adverse drug reactions
- AE, adverse events
- AIT, allergen immunotherapy
- ANCOVA, analysis of covariance
- ARC, adverse reaction complexes
- Allergen immunotherapy
- Allergoid
- CIA-CPT, Culture – Independent Assessment of the Conjunctival Provocation Test
- CPT, conjunctival provocation test
- Cumulative dose
- Curvilinear dose response
- EAACI, European Academy of Allergy and Clinical Immunology
- EMA, European Medicine Agency
- FAS, Full Analysis Set
- FEV, forced expiratory volume
- FVC, forced vital capacity
- Grass pollen
- HEP, Histamine Equivalent Potency
- LPS, lipopolysaccharide
- MCP-Mod, Multiple Comparison Procedure and Modelling
- MCT, microcrystalline tyrosine
- MPL, Monophosphoryl Lipid A
- MedDRA, Medical Dictionary for Regulatory Activities
- PPS, Per Protocol Set
- SAEs, serious adverse events
- SAF, safety set
- SAR, seasonal allergic rhinoconjunctivitis
- SD, standard deviation
- SU, standardized units
- TEAEs, treatment-emergent adverse events
- TLR, Toll-like receptor
- TSS, Total Symptom Score
- mFAS, Modified Full Analysis Set
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Affiliation(s)
- S. Zielen
- Department for Children and Adolescents, Division of Allergology, Pulmonology and Cystic fibrosis, Goethe University, Frankfurt, Germany
| | - P. Kuna
- Poradnia Alergologii i Chorób Płuc Lodz, Poland
| | - W. Aberer
- Department of Dermatology, Medical University of Graz, Graz, Austria
| | - S. Lassmann
- Specialist in Otolaryngology, Saalfeld, Germany
| | - O. Pfaar
- Department of Otorhinolaryngology, Head and Neck Surgery, Section of Rhinology and Allergy, University Hospital Marburg, Philipps-Universität Marburg, Germany
| | - L. Klimek
- Centre for Rhinology and Allergology, Wiesbaden, Germany
| | - A. Wade
- Allergy Therapeutics Ltd., Worthing, UK
| | - K. Kluehr
- Allergy Therapeutics Ltd., Worthing, UK
| | - J. Raab
- Allergy Therapeutics Ltd., Worthing, UK
| | - D. Wessiepe
- Metronomia Clinical Research GmbH, Munich, Germany
| | - D. Lee
- Allergy Therapeutics Ltd., Worthing, UK
| | | | | | | | | | | | - P.J. de Kam
- Allergy Therapeutics Ltd., Worthing, UK
- Corresponding author. Allergy Therapeutics (UK) Ltd, Dominion Way Worthing, West Sussex BN14 8SA, UK
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90
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Patel S, Khan A, Sivaswamy A, Ferreira-Legere L, Austin P, Lee D, Ko D, Tu J, Udell J. DERIVATION OF A MODEL THAT ACCURATELY PREDICTS CARDIOVASCULAR FROM NON-CARDIOVASCULAR CAUSE OF DEATH USING ADMINISTRATIVE HEALTH DATA SOURCES. Can J Cardiol 2019. [DOI: 10.1016/j.cjca.2019.07.077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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91
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Deras I, Du T, Zhao C, Haseley N, Yazdanparast A, Jiang T, Mentzer A, Purdy A, Crain B, Echegaray C, Lee D, Lee J, Silhavy J, O’Brien K, Vijayaraghavan R, Garcia R, Haigis R, Pawlowski T, Dockter J. Clinical and analytical accuracy of a 523 gene panel next-generation sequencing (NGS) assay on formalin-fixed paraffin-embedded (FFPE) solid tumour samples. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz257.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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92
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Angaran P, Dorian P, Ha A, Thavendiranathan P, Tsang W, Leong-Poi H, Woo A, Dias B, Wang X, Austin P, Lee D. P2618Association of left ventricular ejection fraction with mortality and hospitalizations. Eur Heart J 2019. [DOI: 10.1093/eurheartj/ehz748.0941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
Although 2-dimensional echocardiography (2DE) is widely used to measure left ventricular ejection fraction (LVEF), the prognostic value of 2DE-derived LVEF has not been clearly demonstrated in a broad range of patients, including those acutely hospitalized as well as ambulatory patients. In particular, the prognostic value of echocardiographic LVEF has not been demonstrated for cardiovascular and heart failure hospitalizations.
Purpose
To determine if greater degrees of LV dysfunction are associated with progressively increasing risks of death or cardiovascular hospitalizations among patients undergoing echocardiography in hospital or outpatient settings.
Methods
We examined quantitative LVEFs from patient-level echocardiographic reports at 3 large hospital laboratories, which were linked to the Canadian Institute for Health Information hospitalization database and to death registries in Ontario, Canada. LVEF was categorized as <25%, 25–35%, 36–45%, or 46–55% (reference). Analyses were performed using cause-specific hazard competing risk models and stratified by: a) outpatient vs. inpatient echocardiogram, and b) if inpatient study, whether the reason for hospitalization was cardiac or noncardiac in nature.
Results
In the echocardiographic cohort of 27,323 patients (median age 68 [IQR: 58–77], 14,828 women [31.7%]), greater reductions in LVEF were associated with higher rates of all-cause mortality, with adjusted hazard ratios (95% CI) of 1.67 (1.57, 1.77) for LVEF <25%, 1.30 (1.24, 1.36) for LVEF 25–35%, and 1.17 (1.11, 1.23) for LVEF 36–45%, compared to LVEF 46–55% (all p<0.001). The cumulative incidence of cardiovascular death was higher as LVEF progressively worsened (Figure). The rate of heart failure hospitalizations was also increased with hazard ratios of 1.71 (1.59, 1.85) for LVEF <25%, 1.39 (1.31, 1.48) for LVEF 25–35%, and 1.21 (1.13, 1.29) for LVEF 36–45%, compared to LVEF 46–55% (all p<0.001). Cardiovascular hospitalizations were also increased with hazard ratios of 1.35 (1.27, 1.42), 1.21 (1.16, 1.27), and 1.13 (1.07, 1.18) for LVEFs <25%, 25–35%, and 36–45%, respectively (all p<0.001). The risk of mortality and hospitalizations increased comparably with greater reductions in LVEF during both inpatient cardiac or noncardiac admissions (p<0.001).
Cumulative incidence of CV death
Conclusions
Quantitative LVEF assessed by 2DE is potent prognostically and was able to stratify the risk of both death and hospitalization outcomes in a wide range of clinical settings. Patients with reduced LVEF measured on inpatient or outpatient echocardiograms, and even in the context of non-cardiac admission, should be considered an at-risk group in whom quality of care metrics could be evaluated in future studies.
Acknowledgement/Funding
Canadian Institutes of Health Research, Heart and Stroke Foundation, and the Ted Rogers Centre for Heart Research
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Affiliation(s)
- P Angaran
- St. Michael's Hospital, Medicine (Cardiology), Toronto, Canada
| | - P Dorian
- St. Michael's Hospital, Medicine (Cardiology), Toronto, Canada
| | - A Ha
- University Health Network, Toronto, Canada
| | | | - W Tsang
- University Health Network, Toronto, Canada
| | - H Leong-Poi
- St. Michael's Hospital, Medicine (Cardiology), Toronto, Canada
| | - A Woo
- University Health Network, Toronto, Canada
| | - B Dias
- London Health Sciences Centre, London, Canada
| | | | | | - D Lee
- University Health Network, Toronto, Canada
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93
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Lee D, Pascoe R, White P, Jhala P, Foulcher T, Fuller J. Do subsequent injury rates and injury regions differ between concussion and other injury types in the Australian Football League? J Sci Med Sport 2019. [DOI: 10.1016/j.jsams.2019.08.227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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94
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Lieberman-Cribbin W, Wolf A, Kaufman A, Lee D, Nicastri D, Flores R, Van Gerwen M. P2.16-01 Risk Factors for Short-Term Post-Operative Events Following Lung Cancer Resection. J Thorac Oncol 2019. [DOI: 10.1016/j.jtho.2019.08.1868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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95
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White P, Jhala P, Pascoe R, Lee D, Fuller J. Are Australian Football League players performing poorer after returning to play following a concussion injury? J Sci Med Sport 2019. [DOI: 10.1016/j.jsams.2019.08.230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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96
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Drilon A, Rogers E, Zhai D, Deng W, Zhang X, Lee D, Ung J, Whitten J, Zhang H, Liu J, Hu T, Zhuang H, Lu Y, Huang Z, Graber A, Zimmerman Z, Xin R, Cui J, Subbiah V. TPX-0046 is a novel and potent RET/SRC inhibitor for RET-driven cancers. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz244.068] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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97
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Piccoli L, Lee D, Stahlman B, Johnson K. 205 Seasonal Variation in Pediatric Behavioral Health Presentations to a Community Emergency Department. Ann Emerg Med 2019. [DOI: 10.1016/j.annemergmed.2019.08.373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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98
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Joo H, Lee D, Jung H, Lim D. Mediation Analysis On The Association Between Statin Use And Fasting Glucose Level. Atherosclerosis 2019. [DOI: 10.1016/j.atherosclerosis.2019.06.378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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99
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Bhandari B, Bian J, Bilton K, Callahan C, Chaves J, Chen H, Cline D, Cooper RL, Danielson D, Danielson J, Dokania N, Elliott S, Fernandes S, Gardiner S, Garvey G, Gehman V, Giuliani F, Glavin S, Gold M, Grant C, Guardincerri E, Haines T, Higuera A, Ji JY, Kadel R, Kamp N, Karlin A, Ketchum W, Koerner LW, Lee D, Lee K, Liu Q, Locke S, Louis WC, Manalaysay A, Maricic J, Martin E, Martinez MJ, Martynenko S, Mauger C, McGrew C, Medina J, Medina PJ, Mills A, Mills G, Mirabal-Martinez J, Olivier A, Pantic E, Philipbar B, Pitcher C, Radeka V, Ramsey J, Rielage K, Rosen M, Sanchez AR, Shin J, Sinnis G, Smy M, Sondheim W, Stancu I, Sterbenz C, Sun Y, Svoboda R, Taylor C, Teymourian A, Thorn C, Tull CE, Tzanov M, Van de Water RG, Walker D, Walsh N, Wang H, Wang Y, Yanagisawa C, Yarritu A, Yoo J. First Measurement of the Total Neutron Cross Section on Argon between 100 and 800 MeV. Phys Rev Lett 2019; 123:042502. [PMID: 31491269 DOI: 10.1103/physrevlett.123.042502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Revised: 05/23/2019] [Indexed: 06/10/2023]
Abstract
We report the first measurement of the neutron cross section on argon in the energy range of 100-800 MeV. The measurement was obtained with a 4.3-h exposure of the Mini-CAPTAIN detector to the WNR/LANSCE beam at LANL. The total cross section is measured from the attenuation coefficient of the neutron flux as it traverses the liquid argon volume. A set of 2631 candidate interactions is divided in bins of the neutron kinetic energy calculated from time-of-flight measurements. These interactions are reconstructed with custom-made algorithms specifically designed for the data in a time projection chamber the size of the Mini-CAPTAIN detector. The energy averaged cross section is 0.91±0.10(stat)±0.09(syst) b. A comparison of the measured cross section is made to the GEANT4 and FLUKA event generator packages, where the energy averaged cross sections in this range are 0.60 and 0.68 b, respectively.
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Affiliation(s)
- B Bhandari
- Department of Physics, University of Houston, Houston, Texas 77204, USA
| | - J Bian
- Department of Physics and Astronomy, University of California, Irvine, California 92697, USA
| | - K Bilton
- Department of Physics, University of California, Davis, California 95616, USA
| | - C Callahan
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - J Chaves
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - H Chen
- Brookhaven National Laboratory, Upton, New York 11973, USA
| | - D Cline
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
| | - R L Cooper
- Department of Physics, New Mexico State University, Las Cruces, New Mexico 88003, USA
| | - D Danielson
- Department of Physics, University of California, Davis, California 95616, USA
| | - J Danielson
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - N Dokania
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - S Elliott
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - S Fernandes
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - S Gardiner
- Department of Physics, University of California, Davis, California 95616, USA
| | - G Garvey
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - V Gehman
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - F Giuliani
- Department of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - S Glavin
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - M Gold
- Department of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - C Grant
- Department of Physics, Boston University, Boston, Massachusetts 02215, USA
| | - E Guardincerri
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - T Haines
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - A Higuera
- Department of Physics, University of Houston, Houston, Texas 77204, USA
| | - J Y Ji
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - R Kadel
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - N Kamp
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - A Karlin
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - W Ketchum
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - L W Koerner
- Department of Physics, University of Houston, Houston, Texas 77204, USA
| | - D Lee
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - K Lee
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
| | - Q Liu
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - S Locke
- Department of Physics and Astronomy, University of California, Irvine, California 92697, USA
| | - W C Louis
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - A Manalaysay
- Department of Physics, University of California, Davis, California 95616, USA
| | - J Maricic
- Department of Physics and Astronomy, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - E Martin
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
| | - M J Martinez
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - S Martynenko
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - C Mauger
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - C McGrew
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - J Medina
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - P J Medina
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - A Mills
- Department of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - G Mills
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | | | - A Olivier
- Department of Physics and Astronomy, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - E Pantic
- Department of Physics, University of California, Davis, California 95616, USA
| | - B Philipbar
- Department of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - C Pitcher
- Department of Physics and Astronomy, University of California, Irvine, California 92697, USA
| | - V Radeka
- Brookhaven National Laboratory, Upton, New York 11973, USA
| | - J Ramsey
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - K Rielage
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - M Rosen
- Department of Physics and Astronomy, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - A R Sanchez
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - J Shin
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
| | - G Sinnis
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - M Smy
- Department of Physics and Astronomy, University of California, Irvine, California 92697, USA
| | - W Sondheim
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - I Stancu
- Department of Physics and Astronomy, University of Alabama, Tuscaloosa, Alabama 35487, USA
| | - C Sterbenz
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - Y Sun
- Department of Physics and Astronomy, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - R Svoboda
- Department of Physics, University of California, Davis, California 95616, USA
| | - C Taylor
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - A Teymourian
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
| | - C Thorn
- Brookhaven National Laboratory, Upton, New York 11973, USA
| | - C E Tull
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - M Tzanov
- Department of Physics and Astronomy, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - R G Van de Water
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - D Walker
- Department of Physics and Astronomy, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - N Walsh
- Department of Physics, University of California, Davis, California 95616, USA
| | - H Wang
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
| | - Y Wang
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
| | - C Yanagisawa
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, USA
| | - A Yarritu
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - J Yoo
- Department of Physics, University of Houston, Houston, Texas 77204, USA
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100
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Abstract
Summary
A within-cluster resampling method is proposed for fitting a multilevel model in the presence of informative cluster size. Our method is based on the idea of removing the information in the cluster sizes by drawing bootstrap samples which contain a fixed number of observations from each cluster. We then estimate the parameters by maximizing an average, over the bootstrap samples, of a suitable composite loglikelihood. The consistency of the proposed estimator is shown and does not require that the correct model for cluster size is specified. We give an estimator of the covariance matrix of the proposed estimator, and a test for the noninformativeness of the cluster sizes. A simulation study shows, as in Neuhaus & McCulloch (2011), that the standard maximum likelihood estimator exhibits little bias for some regression coefficients. However, for those parameters which exhibit nonnegligible bias, the proposed method is successful in correcting for this bias.
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Affiliation(s)
- D Lee
- Department of Statistics, Iowa State University, 2438 Osborn Drive, Ames, Iowa 50011, USA
| | - J K Kim
- Department of Statistics, Iowa State University, 2438 Osborn Drive, Ames, Iowa 50011, USA
| | - C J Skinner
- Department of Statistics, London School of Economics and Political Science, Houghton Street, London, WC2A 2AE, UK
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