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Baptista A, Pedrosa M, Curate F, Ferreira MT, Marques MPM. Estimation of the post-mortem interval in human bones by infrared spectroscopy. Int J Legal Med 2021; 136:309-317. [PMID: 34613463 DOI: 10.1007/s00414-021-02641-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 06/14/2021] [Indexed: 12/21/2022]
Abstract
In forensic anthropology, there is an inherent difficulty in estimating the post-mortem interval (PMI). This study aimed to assess whether there is a correlation between changes in the bone mineral component and the PMI estimation. Samples of femur and humerus from 80 identified individuals with known post-mortem interval were analyzed. Infrared spectroscopy in attenuated total reflectance mode (FTIR-ATR) was applied for this analysis, several indices having been obtained from the infrared bands most representative of the bone's relative contents in carbonate and phosphate. Specific relationships between sex/age and PMI were attained: for larger PMIs, there was an increase in the amount of B-type carbonate (BPI), A-type carbonates (API), and in the carbonate/phosphate (C/P) ratio, and a decrease of the crystallinity index (CI) and in the carbonate ratio (C/C). Two particular infrared indices (CI and C/C) were identified as the most suitable for post-mortem interval estimation, especially in females, controlling the effects of sex and age (in the statistical analysis).
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Petaros A, Caplova Z, Verna E, Adalian P, Baccino E, de Boer HH, Cunha E, Ekizoglu O, Ferreira MT, Fracasso T, Kranioti EF, Lefevre P, Lynnerup N, Ross A, Steyn M, Obertova Z, Cattaneo C. Technical Note: The Forensic Anthropology Society of Europe (FASE) Map of Identified Osteological Collections. Forensic Sci Int 2021; 328:110995. [PMID: 34583243 DOI: 10.1016/j.forsciint.2021.110995] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Revised: 09/03/2021] [Accepted: 09/06/2021] [Indexed: 11/26/2022]
Abstract
Identified (documented) osteological collections represent an important resource in the development of forensic anthropology standards and methods as well as a precious tool for learning and training of practitioners. Even though the number of papers presenting identified collections worldwide increases, many of the collections have still not been divulged to the scientific community in sufficient detail to ascertain their exact number. The Forensic Anthropology Society of Europe (FASE) therefore developed a tool that goes beyond sporadic publications: the FASE Map of Identified Osteological Collections, which is freely accessible and continuously updated and revised. The online map is available at http://forensicanthropology.eu/osteological-collections/. The map of skeletal collections was created in 2017 and currently displays information on 153 identified osteological collections (43 of them categorized as contemporary) located in 41 different countries. This article offers a short analysis of the type, geographical location and content of the collections included in the map. The aim of this article and the map as such is to provide a useful resource to facilitate research planning and teaching in forensic anthropology and related disciplines.
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Oliveira-Santos I, Coelho C, Cunha E, Baptista IP, Ferreira MT. The dental prosthesis (removable and fixed) from the Colecção de Esqueletos Identificados Século XXI (CEI/XXI). Int J Legal Med 2021; 135:2595-2602. [PMID: 34553261 DOI: 10.1007/s00414-021-02701-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 09/09/2021] [Indexed: 11/27/2022]
Abstract
For identification of the unknown, the analysis of individualizing characteristics is a paramount procedure, which allows the reconciliation of antemortem with postmortem data. Worldwide, populations are commonly affected by tooth loss, leading to procedures of oral rehabilitation, such as dental prostheses. Although the potential of these devices for human identification is well known, the lack of marks or serial numbers as well as scarce systematic register on databases may difficult its use. The objective of this paper is to present and describe the cases with dentures and bridges of an identified osteological collection, the Colecção de Esqueletos Identificados Século XXI. All the individuals were macroscopically observed, and the cases presenting dental prostheses were registered. A total of thirty-one individuals (20 females; 11 males), ages 38 to 91 years, presented 49 dental prosthesis (removable or fixed), of various materials. The removable acrylic dentures (n = 42) were the most frequent. No identifying marks or production labels were found. This research reinforces two focal points: the value of studying and recognizing medical devices and their application for identification, and the relevance of identified skeletal collections for the advance of forensic science in the current multidisciplinary approach.
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Branco P, Segurado P, Costa MJ, Teixeira A, Santos JM, Ferreira MT, Duarte G. Knowledge Gaps in the Definition of Threats for the Red List Assessment of European Freshwater-Dependent Fish Species. BIOLOGY 2021; 10:biology10070680. [PMID: 34356535 PMCID: PMC8301433 DOI: 10.3390/biology10070680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 07/14/2021] [Accepted: 07/15/2021] [Indexed: 11/16/2022]
Abstract
Simple Summary This study aims to understand if the threats to freshwater-dependent species identified by The International Union for Conservation of Nature Red List of Threatened Species are correctly supported by valid literature. The results show that 99% of threats are not supported by validated published scientific knowledge. This may lead to ineffective conservation and management plans. Funding to study and fill baseline knowledge gaps about threats should be a priority. Abstract Freshwater ecosystems are disproportionally important for biodiversity conservation, as they support more than 9% of known animal species while representing less than 1% of the Earth’s surface. However, the vast majority of the threats (99%, or 826 out of 837) identified by the International Union for Conservation of Nature Red List of Threatened Species known to affect the 434 known freshwater-dependent fish and lampreys of Europe are not supported by validated published scientific knowledge. This general lack of information about freshwater-dependent fish and lamprey species may have deleterious effects on species conservation, and additional funding is required to fill baseline knowledge gaps.
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Máquina A, Ferreira MT, Teles E, Santos D, Borges Neto W. Rapid Quantification of the Palm Kernel Biokerosene Content in Mixtures with Aviation Kerosene using MIR Spectroscopy and Multivariate Regression by PLS. BRAZILIAN JOURNAL OF ANALYTICAL CHEMISTRY 2021. [DOI: 10.30744/brjac.2179-3425.ar-26-2021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
An alternative methodology was developed to monitor the biokerosene content of palm kernel in blend with kerosene using medium infrared spectroscopy associated with partial least squares (PLS). The efficiency of this methodology was analyzed based on the parameters of accuracy and figures of merit. The values of root-mean-square error of cross-validation (RMSECV), root-mean-square error of calibration (RMSEC) and root-mean-square error of prediction (RMSEP) were in agreement because the RMSEP was higher than RMSECV and RMSEC. In addition, the RMSEP value is considered acceptable according to the Brazilian standard ABNT NBR 15568 because it is less than 1%. The figures of merit were performed in agreement with the requirements established in the standard ASTM E1655-05. The linearity of the model was assessed based on the analysis of the model fit through the correlation of the actual and predicted values of the calibration and prediction sets, where a high correlation between the values was evidenced, with a correlation coefficient (R) exceeding 0.99. The good results of the application of MIR spectroscopy combined with multivariate regression by PLS suggest that this analytical methodology is feasible, efficient and suitable for use by inspection agencies to control the biokerosene content of palm kernel in mixture with diesel.
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Carvalho R, Cardoso P, Gil A, Ferreira MT, Ramos C, Lamelas-Lopez L, Pereira F, Malumbres-Olarte J, Ros-Prieto A, Boieiro M, Borges PAV. Standardised inventories of spiders (Arachnida, Araneae) on touristic trails of the native forests of the Azores (Portugal). Biodivers Data J 2021; 9:e62886. [PMID: 33911916 PMCID: PMC8065010 DOI: 10.3897/bdj.9.e62886] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Accepted: 03/22/2021] [Indexed: 11/12/2022] Open
Abstract
Background The sharp increase in tourist visitation of the Azores Archipelago from 2015 onwards raised concerns about the impacts of recreational tourism on native habitats. In response, a project was financed by the Azorean Government to investigate the drivers of biodiversity erosion associated with recreational tourism. Here, we present the data on spider biodiversity found on trails located within the native Azorean forests as they are home to several endemic species of great conservation value. We applied an optimised and standardised sampling protocol (COBRA) in twenty-three plots located in five trails on Terceira and São Miguel Islands and assessed diversity and abundance of spider species at different distances from the trail head and the trail itself. New information Of the 45 species (12435 specimens) collected, 13 were endemic to the Azores (9690 specimens), 10 native non-endemic (2047 specimens) and 22 introduced (698 specimens). This database will be the baseline of a long-term monitoring project for the assessment of touristic impacts on native forest trails. This methodology can also be used on other habitats and biogeograhical regions.
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Pedrosa M, Ferreira MT, E Batista de Carvalho LA, M Marques MP, Curate F. The association of osteochemometrics and bone mineral density in humans. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2021; 176:434-444. [PMID: 33852736 DOI: 10.1002/ajpa.24283] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 02/12/2021] [Accepted: 03/24/2021] [Indexed: 12/29/2022]
Abstract
OBJECTIVES Even though much is known about bone mineral and matrix composition, studies about their relationship with several bone properties and its alterations related to bone diseases such as osteoporosis are practically non-existent in humans. Thus, the development of methods to understand the effects of bone properties at a microscopic level is paramount. This research aimed to evaluate whether Fourier transform infrared-attenuated total reflectance (FTIR-ATR) band intensity ratios correlate with femoral bone mass, bone mineral content (BMC) (total and femoral neck), bone mineral per unit area (BMD) (total, femoral neck, greater trochanter, intertrochanteric region, and Ward's area) and the area (total and femoral neck). A sample of femora from the 21st Century Identified Skeleton Collection (N = 78, 42 females and 36 males) was employed and BMC, BMD, and the femoral areas were acquired by DXA. RESULTS It was found that only females' BMD had a significant association with the femoral FTIR-ATR indices under study, whereas bone collagen (Am/P) and the content of carbonate Type A (API) in males correlated with the total proximal femur area of the regions of interest and the femoral neck area. DISCUSSION Men and women showed different changes related to their chemical composition in BMD, BMC, and probed area, most likely due to differences in structure and physiology, as well as mechanical strength in the proximal femoral sites where BMD was analyzed.
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Duarte G, Segurado P, Haidvogl G, Pont D, Ferreira MT, Branco P. Damn those damn dams: Fluvial longitudinal connectivity impairment for European diadromous fish throughout the 20th century. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 761:143293. [PMID: 33183820 DOI: 10.1016/j.scitotenv.2020.143293] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 10/21/2020] [Accepted: 10/24/2020] [Indexed: 06/11/2023]
Abstract
River longitudinal connectivity is crucial for diadromous fish species to reproduce and grow, its fragmentation by large dams may prevent these species to complete their life cycle. This work aims to evaluate the impact of large dams on the structural longitudinal connectivity at the European scale, from a Diadromous fish species perspective, since the beginning of the 20th century until the early 21st century. Based on large dam locations and completion year, a multitude of river impairment metrics were calculated at three spatial scales for six European oceanic regions and 12 time periods. The number of basins affected by large dams is overall low (0.4%), but for large river basins, that cover 78% of Europe's area, 69.5% of all basins, 55.4% of the sub-basins and 68.4% of river length are impaired. River network connectivity impairment became increasingly significant during the second half of the 20th century and is nowadays spatially widespread across Europe. Except for the North Atlantic, all oceanic regions have over 50% of impacted river length. Considering large river basins, the Mediterranean (95.2%) and West Atlantic (84.6%) regions are the most affected, while the Black (92.1%) and Caspian (96.0%) regions stand out as those with most compromised river length. In 60 years, Europe has gone from reduced impairment to over two-thirds of its large rivers with structural connectivity problems due to large dams. The number of such barriers increased significantly in the second half of the 20th century, especially main stem dams with decreasing distance to the river mouth. Currently, the structural longitudinal connectivity of European river networks is severely impacted. This concerns all regions considered, and those in southern Europe will face even higher challenges, given that this will be a future hot spot for hydropower development and predictably more affected by climate change.
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Lozanovska I, Rivaes R, Vieira C, Ferreira MT, Aguiar FC. Streamflow regulation effects in the Mediterranean rivers: How far and to what extent are aquatic and riparian communities affected? THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 749:141616. [PMID: 32827828 DOI: 10.1016/j.scitotenv.2020.141616] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Revised: 08/08/2020] [Accepted: 08/08/2020] [Indexed: 06/11/2023]
Abstract
Dam-induced disruption of the natural continuum of rivers has manifold consequences on fluvial ecosystems, but how distinct plant groups and plant adaptive strategies can mediate the regulation effects is largely unexplored. In this work, we focused on how different plant groups (macrophytes, bryophytes, and riparian woody vegetation) respond to hydrological alterations along the river and across the riparian zone downstream of dams. We specifically aimed to determine the degree of regulation [DOR] and distance from dam [DFD], where river regulation no longer significantly affects plant communities in two case studies - a run-of-river dam and a reservoir in Portugal. We collected data on plant species cover in 7 unregulated and 24 regulated sites in June-July 2019. We performed a cluster and ordination analysis to derive guilds using flow-responsive traits and applied linear models to predict guild alterations along the gradient of DOR and DFD. We established three macrophytes, six bryophytes, and five riparian guilds. Our results showed that the vegetation response to regulation was plant group-reliant and guild-specific. Overall, plant responses were expressed by changes in plant cover, and not by guilds' loss. We observed (1) an increase of the guild cover of macrophytes and a decrease in bryophytes cover with increasing regulation gradient and diverse responses for riparian guilds; (2) an encroachment of riparian vegetation guilds into the channel downstream of the storage reservoir and expansion outwards downstream of the run-of-river dam; (3) a higher number of significant alterations for reservoir sites compared with run-of-river sites. Finally, for particular guilds, we determined specific DOR and DFD from which guild covers became significantly indistinct from respective guild cover in unregulated circumstances. Understanding the communities' responses to diverse regulation types and the extent that different plant adaptations may counter regulation effects can be vital for optimizing river restoration projects.
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Monteiro C, Ferreira MT, Curate F, Gonçalves D. Assessing the reliability of dual-energy X-ray absorptiometry analyses in burned bones. AUST J FORENSIC SCI 2020. [DOI: 10.1080/00450618.2020.1826579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Ferreira MT, Coelho C, Makhoul C, Navega D, Gonçalves D, Cunha E, Curate F. New data about the 21st Century Identified Skeletal Collection (University of Coimbra, Portugal). Int J Legal Med 2020; 135:1087-1094. [PMID: 32857278 DOI: 10.1007/s00414-020-02399-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 08/10/2020] [Indexed: 11/30/2022]
Abstract
After the publication of the first article in 2014, 21st Century Identified Skeletal Collection, housed in the Laboratory of Forensic Anthropology, Department of Life Sciences at the University of Coimbra, Portugal, has been growing. Currently, the collection is composed of 302 complete adult skeletons of both sexes, which means that in 5 years it has doubled. The collection consists mostly of elderly individuals, with only 12.25% of the individuals aged less than 61 years old. All individuals are Portuguese nationals who died between 1982 and 2012. Ninety individuals exhibit prostheses, other medical devices and signs of surgical procedures. Moreover, a sub-collection of experimentally burned skeletons is under development, and currently includes 56 individuals (18.54% of the collection). The 21st Century Identified Skeletal Collection constitutes a fundamental tool for forensic anthropology research, including the development and validation studies of methods that focus on elderly individuals, as can be ascertained by the numerous scientific publications and academic scholarship that have been produced in previous years.
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Mameri D, Branco P, Ferreira MT, Santos JM. Heatwave effects on the swimming behaviour of a Mediterranean freshwater fish, the Iberian barbel Luciobarbus bocagei. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 730:139152. [PMID: 32402977 DOI: 10.1016/j.scitotenv.2020.139152] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 04/29/2020] [Accepted: 04/29/2020] [Indexed: 05/12/2023]
Abstract
Heatwaves, which can be defined as increases of at least 5 °C in air temperature for more than five consecutive days for a specified reference period, are expected to become more frequent under the ongoing climate change, with freshwater organisms being particularly vulnerable to high temperature fluctuations. In Mediterranean-climate areas, depending on the extent of summer droughts and loss of longitudinal connectivity, river segments may become isolated, maintaining fish populations confined to a series of disconnected pools, with no possibility to move to thermal refugia and thus becoming more prone to thermal stress. In this study, we evaluated the effect of a simulated heatwave on the swimming behaviour of juvenile stages of a potamodromous native cyprinid fish, the Iberian barbel Luciobarbus bocagei, under experimental mesocosm conditions. Behavioural traits included fish activity, boldness and shoal cohesion and were continuously measured at a constant flow velocity of 18 cm s-1, which is typical of riffle habitats. Overall, results show that the behaviour of juvenile Iberian barbel is likely to be affected by heatwaves, with fish displaying lower activity and boldness, while no clear difference was observed in shoal cohesion. This study highlights the importance of managing thermal refugia that are crucial for fish to persist in intermittent rivers. Future studies should focus on the interaction of heatwaves with other stressors, such as oxygen depletion, for a broader understanding of the perturbation affecting freshwater fishes under a changing climate.
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Lozanovska I, Bejarano MD, Martins MJ, Nilsson C, Ferreira MT, Aguiar FC. Functional Diversity of Riparian Woody Vegetation Is Less Affected by River Regulation in the Mediterranean Than Boreal Region. FRONTIERS IN PLANT SCIENCE 2020; 11:857. [PMID: 32670322 PMCID: PMC7327385 DOI: 10.3389/fpls.2020.00857] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 05/27/2020] [Indexed: 06/11/2023]
Abstract
River regulation may filter out riparian plants often resulting in reduced functional diversity, i.e., in the range of functions that organisms have in communities and ecosystems. There is, however, little empirical evidence about the magnitude of such reductions in different regions. We investigated the functional diversity patterns of riparian woody vegetation to streamflow regulation in boreal Sweden and Mediterranean Portugal using nine plant functional traits and field data from 109 sampling sites. We evaluated changes in mean plant functional traits as well as in indices of multidimensional functional traits, i.e., functional richness (FRic) and functional redundancy (FRed) within regions and between free-flowing and regulated river reaches. We found that regulation significantly reduced functional diversity in Sweden but not in Portugal. In Sweden, the increased magnitude of variations in water flow and water level in summer, the prolonged duration of extreme hydrological events, the increased frequency of high-water pulses, and the rate of change in water conditions were the likely main drivers of functional diversity change. Small riparian plant species with tiny leaves, poorly lignified stems, and shallow root systems were consistently associated with regulated sites in the boreal region. In Portugal, the similar functional diversity values for free-flowing and regulated rivers likely stem from the smaller streamflow alterations by regulation combined with the species legacy adaptations to the Mediterranean natural hydrological regimes. We conclude that streamflow regulation may reduce the functional diversity of riparian woody vegetation, but the magnitude of these effects will vary depending on the adaptations of the local flora and the patterns of streamflow disturbances. Our study provides insights into functional diversity patterns of riparian woody vegetation affected by regulation in contrasting biomes and encourages further studies of the functional diversity thresholds for maintaining ecosystems.
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Pedrosa M, Curate F, Batista de Carvalho LAE, Marques MPM, Ferreira MT. Beyond metrics and morphology: the potential of FTIR-ATR and chemometrics to estimate age-at-death in human bone. Int J Legal Med 2020; 134:1905-1914. [DOI: 10.1007/s00414-020-02310-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 04/24/2020] [Indexed: 01/13/2023]
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Monteiro M, Reino L, Schertler A, Essl F, Figueira R, Ferreira MT, Capinha C. A database of the global distribution of alien macrofungi. Biodivers Data J 2020; 8:e51459. [PMID: 32280297 PMCID: PMC7142166 DOI: 10.3897/bdj.8.e51459] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 03/16/2020] [Indexed: 11/12/2022] Open
Abstract
BACKGROUND Human activities are allowing the ever-increasing dispersal of taxa to beyond their native ranges. Understanding the patterns and implications of these distributional changes requires comprehensive information on the geography of introduced species. Current knowledge about the alien distribution of macrofungi is limited taxonomically and temporally, which severely hinders the study of human-mediated distribution changes for this taxonomic group. NEW INFORMATION Here, we present a database on the global alien distribution of macrofungi species. Data on the distribution of alien macrofungi were searched in a large number of data sources, including scientific publications, grey literature and online databases. The database compiled includes 1966 records (i.e. species x region combinations) representing 2 phyla, 7 classes, 22 orders, 82 families, 207 genera, 648 species and 31 varieties, forms or subspecies. Dates of introduction records range from 1753 to 2018. Each record includes the location where the alien taxon was identified and, when available, the date of first observation, the host taxa or other important information. This database is a major step forward to the understanding of human-mediated changes in the distribution of macrofungal taxa.
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Antunes S, Fagundes LL, Wasterlain SN, Ferreira MT. Variação anatómica: análise de caracteres nãométricos do esqueleto pós-craniano em escravos africanos dos séculos XV–XVII (Lagos, Portugal). ANTROPOLOGIA PORTUGUESA 2019. [DOI: 10.14195/2182-7982_36_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Abstract
Em 2009, foram descobertos, em Lagos (Portugal), os esqueletos de 158 indivíduos inumados numa lixeira dos séculos XV–XVII. As condições de descarte dos indivíduos, o seu perfil biológico, as modificações intencionais dos seus dentes e o contexto histórico de Lagos suportam a hipótese de se ter tratado de escravos africanos. No presente estudo, pretendeuse avaliar a frequência de caracteres nãométricos nos esqueletos destes indivíduos, bem como diferenças entre sexos e lateralidades, de modo a identificar eventuais caracteres específicos desta amostra. Foram incluídos no estudo os 101 indivíduos adultos da coleção. Foram investigadas 29 variações anatómicas de oito pares de ossos do esqueleto pós-craniano (clavícula, escápula, úmero, rádio, ulna, fémur, patela e tíbia), das quais nove não foram encontradas. As restantes 20 foram registadas com frequências compreendidas entre 1,8% e 96,1%. Apenas um carácter (sulco costoclavicular) demonstrou diferenças significativas entre os dois sexos. As lateralidades revelaram-se diferentes em seis caracteres (chanfradura supraescapular, abertura septal, chanfradura troclear medial, fossa hipotrocanteriana, chanfradura do vasto external e faceta de agachamento lateral). Quando comparados com a literatura, os resultados obtidos não permitiram identificar qualquer carácter específico desta amostra populacional.
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Ferreira MT, Coelho C, Cunha E, Wasterlain SN. Evidences of trauma in adult African enslaved individuals from Valle da Gafaria, Lagos, Portugal (15th-17th centuries). J Forensic Leg Med 2019; 65:68-75. [PMID: 31108434 DOI: 10.1016/j.jflm.2019.05.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Revised: 05/07/2019] [Accepted: 05/10/2019] [Indexed: 11/25/2022]
Abstract
The aim of this work is to discuss the frequency of traumatic bone injuries in a quite unique skeletal assemblage of enslaved people from Valle da Gafaria, Lagos, Portugal (15th-17th centuries). In all, 30 males, 58 females, and 15 individuals of unknown sex were included in the study. The skeletal remains were macroscopically observed for traumatic lesions. When present, the traumatic bone injuries were classified as having occurred ante or perimortem. The antemortem lesions were also studied through radiological analysis. Traumatic lesions were identified in 11 men (36.7%), 23 women (39.7%) and two individuals of unknown sex (13.3%). From these 36 individuals, 61.1% presented antemortem trauma, 25.0% perimortem trauma and 13.9% exhibited simultaneously ante and perimortem trauma. The mechanism of all traumatic injuries was blunt force trauma. From the 9965 analysed bones, 186 exhibited traumatic lesions (87 antemortem, 97 perimortem, and two with both ante and perimortem lesions). The bone more affected by antemortem trauma was the 5th right intermediate foot phalange (40.0%) and by perimortem trauma was the skull (11.4%), probably related to accidents and interpersonal violence, respectively. When analysed by sex, the only significant differences were found in the skull and the right 5th proximal foot phalanges, men (57.1%) presenting more lesions than women (15.4%). The obtained results are consistent with an arduous life, corroborating historical sources which document labour accidents, physical punishments and hard work in the populations of slaves.
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Gonino G, Branco P, Benedito E, Ferreira MT, Santos JM. Short-term effects of wildfire ash exposure on behaviour and hepatosomatic condition of a potamodromous cyprinid fish, the Iberian barbel Luciobarbus bocagei (Steindachner, 1864). THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 665:226-234. [PMID: 30772552 DOI: 10.1016/j.scitotenv.2019.02.108] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 02/06/2019] [Accepted: 02/07/2019] [Indexed: 06/09/2023]
Abstract
Wildfires are a common phenomenon in Mediterranean regions that is becoming increasingly frequent and severe, causing several environmental concerns, of which ash runoff represents an important source of disturbance for aquatic organisms, in particular for fishes. Studies on the behavioural response of fishes to wildfire ash runoff are scarce and seldom include cyprinid species. The goal of this study was to investigate in a 3-artificial flume channel mesocosm, the behavioural and hepatosomatic condition responses of a native widespread potamodromous fish, the Iberian barbel (Luciobarbus bocagei), previously exposed for 24 h to different concentrations of wildfire ashes: 0.0 g/L (the control, no ash), 1.0 g/L (low concentration) and 2.0 g/L (high concentration). Behavioural parameters included i) routine activity, ii) boldness and iii) shoaling cohesion. The hepatosomatic index (HSI) was further determined to assess the health condition of fish. Significant differences on fish behaviour parameters were detected between the control and the high concentration of ash. Accordingly, i) an increasing proportion of fish were found on resting activity (56.2% vs 30.6% in the control), whereas the proportion of fish on searching behaviour (58.4% in the control) decreased (41.5%); ii) the proportion of bolder individuals was found to decrease (42.5% in the control vs. 29.4%) and iii) the same trend was detected for shoaling cohesion (61.3% in the control to 33.8%, of all fish within a body length of each other). Such differences were paralleled by an increase in the HSI from 1.62% (control) to 2.40% (high concentration). The present study shows that even short duration exposure to ash-loaded runoff can alter fish behaviour and hepatosomatic condition and highlights the need to maintain an unfragmented river network, or, when this is not possible, to prioritize the removal or retrofitting of barriers to increase movement dispersal and provide conditions for species recovery from fire-disturbances.
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Malumbres-Olarte J, Cardoso P, Crespo LCF, Gabriel R, Pereira F, Carvalho R, Rego C, Nunes R, Ferreira MT, Amorim IR, Rigal F, Borges PAV. Standardised inventories of spiders (Arachnida, Araneae) of Macaronesia I: The native forests of the Azores (Pico and Terceira islands). Biodivers Data J 2019; 7:e32625. [PMID: 31065232 PMCID: PMC6478652 DOI: 10.3897/bdj.7.e32625] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Accepted: 03/08/2019] [Indexed: 11/21/2022] Open
Abstract
Background The data presented here come from samples collected as part of two recent research projects (NETBIOME - ISLANDBIODIV and FCT - MACDIV) which aimed at understanding the drivers of community assembly in Macaronesian islands. We applied the sampling protocol COBRA (Conservation Oriented Biodiversity Rapid Assessment, Cardoso 2009) in sixteen 50 m x 50 m native forest plots in the Azorean Islands of Pico (6 plots) and Terceira (10 plots) to assess spider diversity. Through this publication, we contribute to the knowledge of the arachnofauna of the Azores and, more specifically, to that of the islands of Pico and Terceira. New information The collected samples yielded 8,789 specimens, of which 45% were adults (3,970) belonging to 13 families, 36 species and three morphospecies that have yet to be described. Species of the family Linyphiidae dominated the samples, with 17 species and two morphospecies that have yet to be described (48% of the taxa). Out of the identified (morpho)species, 16 were introduced, 13 Azorean endemic (three of which were undescribed) and seven native (five of them Macaronesian endemics). We report the first record of the introduced species Haplodrassussignifer and Agynetadecora in Pico Island.
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Carvalho L, Mackay EB, Cardoso AC, Baattrup-Pedersen A, Birk S, Blackstock KL, Borics G, Borja A, Feld CK, Ferreira MT, Globevnik L, Grizzetti B, Hendry S, Hering D, Kelly M, Langaas S, Meissner K, Panagopoulos Y, Penning E, Rouillard J, Sabater S, Schmedtje U, Spears BM, Venohr M, van de Bund W, Solheim AL. Protecting and restoring Europe's waters: An analysis of the future development needs of the Water Framework Directive. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 658:1228-1238. [PMID: 30677985 DOI: 10.1016/j.scitotenv.2018.12.255] [Citation(s) in RCA: 124] [Impact Index Per Article: 24.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2018] [Revised: 12/16/2018] [Accepted: 12/16/2018] [Indexed: 05/22/2023]
Abstract
The Water Framework Directive (WFD) is a pioneering piece of legislation that aims to protect and enhance aquatic ecosystems and promote sustainable water use across Europe. There is growing concern that the objective of good status, or higher, in all EU waters by 2027 is a long way from being achieved in many countries. Through questionnaire analysis of almost 100 experts, we provide recommendations to enhance WFD monitoring and assessment systems, improve programmes of measures and further integrate with other sectoral policies. Our analysis highlights that there is great potential to enhance assessment schemes through strategic design of monitoring networks and innovation, such as earth observation. New diagnostic tools that use existing WFD monitoring data, but incorporate novel statistical and trait-based approaches could be used more widely to diagnose the cause of deterioration under conditions of multiple pressures and deliver a hierarchy of solutions for more evidence-driven decisions in river basin management. There is also a growing recognition that measures undertaken in river basin management should deliver multiple benefits across sectors, such as reduced flood risk, and there needs to be robust demonstration studies that evaluate these. Continued efforts in 'mainstreaming' water policy into other policy sectors is clearly needed to deliver wider success with WFD goals, particularly with agricultural policy. Other key policy areas where a need for stronger integration with water policy was recognised included urban planning (waste water treatment), flooding, climate and energy (hydropower). Having a deadline for attaining the policy objective of good status is important, but even more essential is to have a permanent framework for river basin management that addresses the delays in implementation of measures. This requires a long-term perspective, far beyond the current deadline of 2027.
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Leite T, Santos JM, Ferreira MT, Canhoto C, Branco P. Does short-term salinization of freshwater alter the behaviour of the Iberian barbel (Luciobarbus bocagei, Steindachner 1864)? THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 651:648-655. [PMID: 30245421 DOI: 10.1016/j.scitotenv.2018.09.191] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Revised: 09/14/2018] [Accepted: 09/15/2018] [Indexed: 06/08/2023]
Abstract
Stream salinization is a great environmental hazard being aggravated by anthropogenic disturbances. Harmful conditions, as increasing salinity in freshwater systems, may negatively affect river fish fauna and possibly influence fish behaviour, such as boldness and/or cerebral lateralization. Salinity has been proven to affect behavioural expression, despite the tolerance of some species. It is thus relevant to study these behaviours, as the salinity exposure effects could represent greater environmental consequences. The impact of salinity stress was evaluated by exposing Iberian barbels, Luciobarbus bocagei (Steindachner, 1864) (Cypriniformes, Cyprinidae), to three levels of salinity (0.9, 9 and 19 mS/cm, using NaCl) and by conducting boldness and lateralization experiments, regarding population trends. Results show that, with increased salinity, fish diverged to the extremes of the shy-bold gradient, the population was slightly lateralized to the left, and seemed to become more lateralized with increasing salinity. However, there were no statistical differences between the treatments. Fish living in a Mediterranean climate are especially resilient to various stressors, which may confer them additional tolerance, and in this case, acute punctual exposure to increased salinity may not be detrimental for behaviour maintenance. We encourage the expansion of the research to different freshwater fish species that would help to recognise salinity thresholds and use them to implement effective conservation measures and appropriate ecological restoration actions for these sensible systems.
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Borges PA, Cardoso P, Fattorini S, Rigal F, Matthews TJ, Di Biase L, Amorim IR, Florencio M, Borda-de-Água L, Rego C, Pereira F, Nunes R, Carvalho R, Ferreira MT, López H, Pérez Delgado AJ, Otto R, Fernández Lugo S, De Nascimento L, Caujapé-Castells J, Casquet J, Danflous S, Fournel J, Sadeyen AM, Elias RB, Fernández-Palacios JM, Oromí P, Thébaud C, Strasberg D, Emerson BC. Community structure of woody plants on islands along a bioclimatic gradient. FRONTIERS OF BIOGEOGRAPHY 2018. [DOI: 10.21425/f5fbg40295] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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Cardoso HFV, Spake L, Wasterlain SN, Ferreira MT. The impact of social experiences of physical and structural violence on the growth of African enslaved children recovered from Lagos, Portugal (15th-17th centuries). AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2018; 168:209-221. [DOI: 10.1002/ajpa.23741] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Revised: 09/07/2018] [Accepted: 10/13/2018] [Indexed: 11/08/2022]
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Duarte G, Moreira M, Branco P, da Costa L, Ferreira MT, Segurado P. One millennium of historical freshwater fish occurrence data for Portuguese rivers and streams. Sci Data 2018; 5:180163. [PMID: 30106390 PMCID: PMC6091242 DOI: 10.1038/sdata.2018.163] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2018] [Accepted: 06/21/2018] [Indexed: 11/08/2022] Open
Abstract
The insights that historical evidence of human presence and man-made documents provide are unique. For example, using historical data may be critical to adequately understand the ecological requirements of species. However, historical information about freshwater species distribution remains largely a knowledge gap. In this Data Descriptor, we present the Portuguese Historical Fish Database (PHish-DB), a compilation of 2214 records (557 at the basin scale, 184 at the sub-basin scale and 1473 at the segment scale) resulting from a survey of 194 historical documents. The database was developed using a three-scale approach that maximises the inclusion of information by allowing different degrees of spatial acuity. PHish database contains records of 25 taxonomical groups and covers a time span of one millennium, from the 11th until the 20th century. This database has already proven useful for two scientific studies, and PHish further use will contribute to correctly assess the full range of conditions tolerated by species, by establishing adequate benchmark conditions, and/or to improve existing knowledge of the species distribution limits.
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Feld CK, Fernandes MR, Ferreira MT, Hering D, Ormerod SJ, Venohr M, Gutiérrez-Cánovas C. Evaluating riparian solutions to multiple stressor problems in river ecosystems - A conceptual study. WATER RESEARCH 2018; 139:381-394. [PMID: 29673937 DOI: 10.1016/j.watres.2018.04.014] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Revised: 03/22/2018] [Accepted: 04/06/2018] [Indexed: 06/08/2023]
Abstract
Rivers are among the most sensitive of all ecosystems to the effects of global change, but options to prevent, mitigate or restore ecosystem damage are still inadequately understood. Riparian buffers are widely advocated as a cost-effective option to manage impacts, but empirical evidence is yet to identify ideal riparian features (e.g. width, length and density) which enhance ecological integrity and protect ecosystem services in the face of catchment-scale stressors. Here, we use an extensive literature review to synthesise evidence on riparian buffer and catchment management effects on instream environmental conditions (e.g. nutrients, fine sediments, organic matter), river organisms and ecosystem functions. We offer a conceptual model of the mechanisms through which catchment or riparian management might impact streams either positively or negatively. The model distinguishes scale-independent benefits (shade, thermal damping, organic matter and large wood inputs) that arise from riparian buffer management at any scale from scale-dependent benefits (nutrient or fine sediment retention) that reflect stressor conditions at broader (sub-catchment to catchment) scales. The latter require concerted management efforts over equally large domains of scale (e.g. riparian buffers combined with nutrient restrictions). The evidence of the relationships between riparian configuration (width, length, zonation, density) and scale-independent benefits is consistent, suggesting a high certainty of the effects. In contrast, scale-dependent effects as well as the biological responses to riparian management are more uncertain, suggesting that ongoing diffuse pollution (nutrients, sediments), but also sources of variability (e.g. hydrology, climate) at broader scales may interfere with the effects of local riparian management. Without concerted management across relevant scales, full biological recovery of damaged lotic ecosystems is unlikely. There is, nevertheless, sufficient evidence that the benefits of riparian buffers outweigh potential adverse effects, in particular if located in the upstream part of the stream network. This supports the use of riparian restoration as a no-regrets management option to improve and sustain lotic ecosystem functioning and biodiversity.
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