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Wee YM, Kim SC, Koo SK, Kim YH, Jung EJ, Choi MY, Park YH, Park KT, Lim DG, Han DJ. Improved islet yields after purification following the novel endogenous trypsin inhibitor and histidine-tryptophan-ketoglutarate treatment in pigs. Transplant Proc 2008; 40:2585-7. [PMID: 18929808 DOI: 10.1016/j.transproceed.2008.08.020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
BACKGROUND Adult porcine islet xenotransplantation into humans is greatly diminished by the difficulty to isolate islets because of their fragility. The goal of this study was to improve the efficacy of islet yields using endogenous trypsin inhibitor and histidine-tryptophan-ketoglutarate (HTK) perfusate. METHOD We compared two porcine islet isolation protocols: Eurocollins solution for in situ pancreas perfusion without use of an endogenous trypsin inhibitor versus HTK solution including endogenous trypsin inhibitor for pancreas perfusion. RESULTS Endogenous trypsin inhibitor and HTK strategies significantly improved total islet yield, recovery, and islet index after purification (P < .05), whereas unpurified islet yield did not increase. An average of 228,000 +/- 95,000 islet equivalents (IEQ) (n = 20) purified islets were obtained in the first group compared with 115,000 +/- 56,000 IEQ (n = 18) in the second group. The average islet index was significantly increased in the first group compared with the second group before and after purification: before: 0.28 versus 0.49 versus after: 0.25 versus 0.4 (P < .05). At this time, islet purity, viability, and stimulation index did not show a significant difference between groups. CONCLUSION Our study showed that endogenous trypsin inhibitor and HTK strategies significantly improved purified islet isolation efficacy because of reduction of islet fragility.
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Koo SK, Kim SC, Wee YM, Kim YH, Jung EJ, Choi MY, Park YH, Park KT, Lim DG, Han DJ. Experimental microencapsulation of porcine and rat pancreatic islet cells with air-driven droplet generator and alginate. Transplant Proc 2008; 40:2578-80. [PMID: 18929806 DOI: 10.1016/j.transproceed.2008.08.019] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Transplantation of microencapsulated islets is proposed as an ideal therapy for the treatment of type 1 diabetes mellitus without immunosuppression. This strategy is based on the principle that foreign cells are protected from the host immune system by an artificial membrane. The aim of this study was to establish an ideal condition of microencapsulation using an air-driven droplet generator and alginate in vitro. The optimal conditions for islet encapsulation were an alginate inflow rate of 10 mL/h, CO2 flow rate of 2.0 L/min in a concentration of 2% alginate. For 2.5% alginate, the alginate inflow rate of 20 mL/h, CO2 flow rate 3.0 L/min was ideal; alginate inflow rate of 40 mL/h, CO2 flow rate of 4.0 L/min showed good microcapsules at 3% alginate. Viability of encapsulated islets was greater than 90%. In terms of insulin secretion, encapsulated islets secreted insulin in response to glucose in static culture medium. However, there was no normal response to low or high glucose challenge with a stimulation index less than 2.0. Microencapsulation of pig islets was successfully performed with air-driven droplet generator and alginate in vitro. Further studies about biocompatibility and glucose control in vivo may provide a useful tool for treatment of patients with diabetes mellitus.
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Cho MW, Choi MY. Equalization of synaptic efficacy by synchronous neural activity. PHYSICAL REVIEW LETTERS 2007; 99:208102. [PMID: 18233189 DOI: 10.1103/physrevlett.99.208102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2007] [Indexed: 05/25/2023]
Abstract
It is commonly believed that spike timings of a postsynaptic neuron tend to follow those of the presynaptic neuron. Such orthodromic firing may, however, cause a conflict with the functional integrity of complex neuronal networks due to asymmetric temporal Hebbian plasticity. We argue that reversed spike timing in a synapse is a typical phenomenon in the cortex, which has a stabilizing effect on the neuronal network structure. We further demonstrate how the firing causality in a synapse is perturbed by synchronous neural activity and how the equilibrium property of spike-timing dependent plasticity is determined principally by the degree of synchronization. Remarkably, even noise-induced activity and synchrony of neurons can result in equalization of synaptic efficacy.
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Kim YH, Choi MY, Kim YS, Park CH, Lee JH, Chung IY, Yoo JM, Choi WS, Cho GJ, Kang SS. Triamcinolone acetonide protects the rat retina from STZ-induced acute inflammation and early vascular leakage. Life Sci 2007; 81:1167-73. [PMID: 17881007 DOI: 10.1016/j.lfs.2007.08.024] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2007] [Revised: 08/08/2007] [Accepted: 08/17/2007] [Indexed: 10/22/2022]
Abstract
Streptozotocin (STZ) has been commonly used to induce in vivo and in vitro hyperglycemic diabetes and its toxicity leads to inflammation and vascular injury. Triamcinolone acetonide (TA), as an anti-angiogenic/anti-inflammatory drug, is clinically used to improve the visual acuity in neovascular and edematous ocular diseases. The aim of this study was to investigate the effect of TA on early inflammation and vascular leakage in the retina of STZ-induced hyperglycemic rats. Hyperglycemia was induced in 8-week-old male Sprague-Dawley (SD) rats by a single intraperitoneal injection of STZ (65 mg/kg); only rats with blood glucose levels >13.9 mmol/l 1 day after STZ injection were included in STZ-hyperglycemic group. Sex- and age-matched SD rats injected with buffer were used as the control group. One day before STZ and buffer injection, 2 microl TA (4 mg/ml in saline) and 2 microl saline were intravitreal-injected into the right and the left eyes of rats, respectively. Retinal vascular leakage was measured using the Evans-blue method. Changes in pro-inflammatory target genes, such as tumor necrotic factor (TNF)-alpha, intracellular adhesion molecule (ICAM)-1, and vascular endothelial growth factor (VEGF) were assessed by immunoblottings, immunostaining, and ELISA analyses. Vascular hyperleakage and up-regulation of most pro-inflammatory genes peaked within a few days after STZ injection and had recovered. However, these changes were blocked by TA pretreatment. Our data suggest that TA controls STZ-induced early vascular leakage and temporary pro-inflammatory signals in the rat retina.
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Kim YH, Choi MY, Kim YS, Han JM, Lee JH, Park CH, Kang SS, Choi WS, Cho GJ. Protein kinase C delta regulates anti-apoptotic alphaB-crystallin in the retina of type 2 diabetes. Neurobiol Dis 2007; 28:293-303. [PMID: 17904375 DOI: 10.1016/j.nbd.2007.07.017] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2007] [Revised: 07/06/2007] [Accepted: 07/17/2007] [Indexed: 12/22/2022] Open
Abstract
We investigated the relationship between phosphorylation of alphaB-crystallin (alphaBC) and retinal apoptosis in type 2 diabetes. The retinas of male Otsuka Long-Evans Tokushima fatty (OLETF) rats at 24 and 35 weeks were used as an animal model for type 2 diabetes and sex- and age-matched Long-Evans Tokushima Otsuka (LETO) rats were used as controls. In the retinas of 35-week OLETF rats, the interaction between alphaBC and protein kinase C delta (PKC delta) among the PKC isozymes, alphaBC phosphorylation at Ser45 (S45p-alphaBC), TUNEL-positive apoptotic ganglion cells, several apoptotic signs, and co-localization of S45p-alphaBC and TUNEL significantly increased as compared with other groups while the alphaBC-Bax interaction greatly decreased. These changes were abolished by rottlerin treatment, a highly specific PKC delta inhibitor. These results suggest that PKC delta is involved in regulation of anti-apoptotic function of alphaBC in the retina of type 2 diabetes.
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Kim S, Yi J, Choi MY. Magnetization of circular DNA. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 76:012902. [PMID: 17677517 DOI: 10.1103/physreve.76.012902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2006] [Indexed: 05/16/2023]
Abstract
We investigate the orbital magnetization of DNA molecules in the relaxed circular structure. It is shown that DNA of homogeneous sequence exhibits paramagnetic responses to external magnetic fields and, surprisingly, the magnetism of circular DNA is equivalent to that of linear DNA. This turns out to result from the fact that the electron population is localized largely on one of the strands. More intriguingly, the magnetic susceptibility is observed to depend on the ring topology defined by the linking number. We also consider sequence heterogeneity and find that the magnetization displays characteristic oscillations, the pattern of which depends crucially on the sequence and the base content.
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Kim YH, Chung IY, Choi MY, Kim YS, Lee JH, Park CH, Kang SS, Roh GS, Choi WS, Yoo JM, Cho GJ. Triamcinolone suppresses retinal vascular pathology via a potent interruption of proinflammatory signal-regulated activation of VEGF during a relative hypoxia. Neurobiol Dis 2007; 26:569-76. [PMID: 17434742 DOI: 10.1016/j.nbd.2007.02.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2006] [Revised: 01/31/2007] [Accepted: 02/04/2007] [Indexed: 10/23/2022] Open
Abstract
We examined the effect of triamcinolone acetonide (TA), a corticosteroid, on the relationship between vascular pathophysiology and vascular endothelial growth factor (VEGF) activation in the retina of a rat model of oxygen-induced retinopathy (OIR). OIR was induced by exposure of hyperoxia (80% oxygen) to Sprague-Dawley (SD) rats from P2 to P14 and then returned to normoxic conditions. TA was intravitreal-injected once into the right eye of OIR rats at P15. Effects of TA on vascular pathophysiology or changes of various genes in response to hypoxia and/or proinflammation under hypoxic retina were assessed by the Evans-blue method, fluorescein isothiocyanate-dextran (FITC-D) infusion, immunoblotting, and ELIZA. TA not only reduced retinal neovascularization and vascular leakage in the OIR-rat retina, but also blocked the induction of hypoxia-response proinflammatory genes before it negatively controlled VEGF activation. These findings suggest a potential that TA suppresses retinal neovascular pathophysiology via proinflammation-mediated activation of VEGF during hypoxia.
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Jeong D, Choi J, Choi MY. Collective oscillations, bicluster motion, and dynamical order in a system of globally coupled rotors with repulsive interactions. Phys Rev E 2007; 74:056106. [PMID: 17279967 DOI: 10.1103/physreve.74.056106] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2005] [Revised: 07/02/2006] [Indexed: 11/07/2022]
Abstract
We perform extensive numerical simulations on a system of globally coupled rotors with repulsive interactions. By controlling systematically initial conditions, we determine the criterion for the emergence of bicluster motion. It is found that stable bicluster motion emerges at low temperatures, where the initial kinetic energy accounts for less than about 60% of the total energy. Also observed are collective oscillations of the potential energy and the magnetization, which are persistent. With appropriately chosen initial conditions, the system exhibits characteristic motion where biclusters keep forming and disappearing continually. It is argued that such bicluster motion is closely related to the dynamical order suggested recently.
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Jeong D, Shim Y, Choi MY, Kim HJ. Effects of Solute Electronic Polarizability on Solvation in a Room-Temperature Ionic Liquid. J Phys Chem B 2007; 111:4920-5. [PMID: 17253742 DOI: 10.1021/jp067316z] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The effects of solute polarizability on solvation and solute transport in the room-temperature ionic liquid 1-ethyl-3-methylimidazolium hexafluorophosphate (EMI+PF(6)-) are investigated via molecular dynamics simulations. A valence-bond description is employed to account for the instantaneous adjustment of the solute electronic charge distribution to the fluctuating solvent environment. It is found that the ultrafast inertial component of solvation dynamics becomes slower as the solute polarizability grows. Moreover, its contribution to overall solvent relaxation becomes reduced with increasing polarizability, especially in the case of nonequilibrium solvation dynamics. Overall, the inclusion of the solute electronic polarizability in the simulations improves the agreement with time-dependent Stokes shift measurements.
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Shim Y, Jeong D, Choi MY, Kim HJ. Rotational dynamics of a diatomic solute in the room-temperature ionic liquid 1-ethyl-3-methylimidazolium hexafluorophosphate. J Chem Phys 2006; 125:61102. [PMID: 16942266 DOI: 10.1063/1.2232303] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Reorientational time correlation functions C(l)(t)( identical withP(l)[cos theta(t)]) for a diatomic solute in 1-ethyl-3-methylimidazolium hexafluorophosphate (EMI(+)PF(6) (-)) are analyzed via molecular dynamics computer simulations, where <...> denotes an equilibrium ensemble average, P(l) the lth order Legendre polynomial and theta(t) the angle between the solute orientation at time t and its initial direction. Overall results are indicative of heterogeneous dynamics in EMI(+)PF(6) (-). For a small nondipolar solute, C(l)(t) are well-described as stretched exponential functions in wide time ranges. One striking feature is that after rapid initial relaxation, C(2)(t) decays more slowly than C(1)(t). As a result, the correlation time associated with the former is considerably longer than that with the latter. This is ascribed to solvent structural fluctuations, which allow large-amplitude solute rotations. As the solute size grows, relaxation of C(l)(t) approaches exponential decay.
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Yoon BG, Choi J, Choi MY, Fortin JY. Health status and resonance in a model for living organisms under periodic stress and healing. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 73:031905. [PMID: 16605556 DOI: 10.1103/physreve.73.031905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2005] [Revised: 12/07/2005] [Indexed: 05/08/2023]
Abstract
We apply the dynamic model for failures to a living organism under periodic stress and study how the health status of the organism evolves. It is found that without healing, the average fraction of intact cells decays either stepwise to zero or to a constant value far from zero, depending on the peak value of the periodic stress. As the parameter measuring the healing probability is raised from zero, the fraction exhibits oscillating behavior, reminiscent of periodic synchronization. The power spectrum at the stress frequency at first increases with the healing parameter, then decreases, which may be called healing resonance. We also study the time evolution of the system in the case that the healing parameter varies periodically with time and observe a transition from the unhealthy state to the healthy one as the healing frequency increases. This suggests how to adjust the frequency of medical treatment to the optimum.
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Choi MY, Hyung SM, Hwang JM. Unilateral recession-resection in children with exotropia of the convergence insufficiency type. Eye (Lond) 2005; 21:344-7. [PMID: 16327792 DOI: 10.1038/sj.eye.6702197] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
PURPOSE The surgical success rates for intermittent exotropia of the convergence insufficiency type have been reported to be variable, and most were studied retrospectively in adults. The purpose of this study was to evaluate prospectively the long-term surgical results of unilateral lateral rectus (LR) muscle recession and medial rectus (MR) muscle resection in children with intermittent exotropia of the convergence insufficiency type. METHODS A total of 14 children with intermittent exotropia greater at near than at distance by 10 prism diopters (PD) or more were included in this prospective study. The amounts of resection and recession were based on near and distance deviation, respectively. Minimum follow-up was 1 year (mean 26.6 months; range, 12-68 months) after surgery. The paired t-test was used to compare preoperative and postoperative measurements of the angle of deviation at distance and near, near-distance difference. RESULTS Significant postoperative reduction was achieved in terms of mean distance exodeviation, from 22.5 PD to 9.1 PD (P=0.000), and mean near exodeviation from 33.8 PD to 13.6 PD (P=0.000). Mean near-distance difference reduced from 11.3 PD preoperatively to 4.6 PD postoperatively (P=0.000). Fresnel prism was used temporarily to treat postoperative esotropia in only one patient for postoperative 6 months. CONCLUSIONS Unilateral surgery biased to MR strengthening more than LR weakening in children with intermittent exotropia of the convergence insufficiency type, was found to successfully reduce both distance and near deviation and to collapse near-distance differences with a low risk of long-term postoperative esotropia.
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Kang H, Jo J, Kim HJ, Choi MY, Rhee SW, Koh DS. Glucose metabolism and oscillatory behavior of pancreatic islets. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 72:051905. [PMID: 16383643 DOI: 10.1103/physreve.72.051905] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2004] [Revised: 08/15/2005] [Indexed: 05/05/2023]
Abstract
A variety of oscillations are observed in pancreatic islets. We establish a model incorporating two oscillatory systems of different time scales: One is the well-known bursting model in pancreatic cells and the other is the glucose-insulin feedback model which considers direct and indirect feedback of secreted insulin. These two are coupled to interact with each other in the combined model, and two basic assumptions are made on the basis of biological observations: The conductance gK(ATP) for the ATP-dependent potassium current is a decreasing function of the glucose concentration whereas the insulin secretion rate is given by a function of the intracellular calcium concentration. Obtained via extensive numerical simulations are complex oscillations including clusters of bursts, slow and fast calcium oscillations, and so on. We also consider how the intracellular glucose concentration depends upon the extracellular glucose concentration, and examine the inhibitory effects of insulin.
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Choi MY, Hwang JM. The long-term result of slanted medial rectus resection in exotropia of the convergence insufficiency type. Eye (Lond) 2005; 20:1279-83. [PMID: 16151478 DOI: 10.1038/sj.eye.6702095] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
PURPOSE To evaluate the long-term results of slanted medial rectus (MR) resection for intermittent exotropia (X(T)) of the convergence insufficiency type. METHODS In all, 10 patients with an X(T) greater at near than at distance by 10 prism diopters (PD) or more were included in this prospective study. Patients received slanted bilateral MR resection. The upper edge of the MR was resected according to the distance exodeviation and the lower edge of the MR was resected according to near exodeviation. The postoperative follow-up period was between 6 and 62 months with a mean of 38.9 months. The paired t-test was used to compare: mean distance angle of deviation preoperatively and postoperatively; mean near angle of deviation preoperatively and postoperatively; and mean near-distance exodeviation difference preoperatively and postoperatively. RESULTS Bilateral slanted MR resections reduced mean exodeviation at distance from 23.0+/-7.2 to 16.3+/-5.4 PD (P=0.03); mean exodeviation at near from 34.3+/-7.7 to 24.6+/-6.9 PD (P=0.01); and mean near-distance difference from 11.4+/-2.6 to 8.3+/-3.5 PD (P=0.04). At the final follow-up examination, all patients demonstrated an exodeviation of 10 PD or more at distance and near, and the exodeviation difference between distance and near deviation was within 10 PD in five of the 10 patients. Three patients had an esodeviation at distance after surgery, but all resolved within 4 weeks. CONCLUSIONS Bilateral slanted MR resections in patients with X(T) of the convergence insufficiency type resulted in undercorrection in all patients.
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Hong H, Park H, Choi MY. Collective synchronization in spatially extended systems of coupled oscillators with random frequencies. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 72:036217. [PMID: 16241558 DOI: 10.1103/physreve.72.036217] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2004] [Indexed: 05/05/2023]
Abstract
We study collective behavior of locally coupled limit-cycle oscillators with random intrinsic frequencies, spatially extended over d -dimensional hypercubic lattices. Phase synchronization as well as frequency entrainment are explored analytically in the linear (strong-coupling) regime and numerically in the nonlinear (weak-coupling) regime. Our analysis shows that the oscillator phases are always desynchronized up to d=4 , which implies the lower critical dimension dP(l) =4 for phase synchronization. On the other hand, the oscillators behave collectively in frequency (phase velocity) even in three dimensions (d=3) , indicating that the lower critical dimension for frequency entrainment is dF(l)=2 . Nonlinear effects due to the periodic nature of limit-cycle oscillators are found to become significant in the weak-coupling regime: So-called runaway oscillators destroy the synchronized (ordered) phase and there emerges a fully random (disordered) phase. Critical behavior near the synchronization transition into the fully random phase is unveiled via numerical investigation. Collective behavior of globally coupled oscillators is also examined and compared with that of locally coupled oscillators.
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Jeong D, Choi MY, Park H. Slow relaxation in the Ising model on a small-world network with strong long-range interactions. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 71:036103. [PMID: 15903489 DOI: 10.1103/physreve.71.036103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2004] [Indexed: 05/02/2023]
Abstract
We consider the Ising model on a small-world network, where the long-range interaction strength J2 is in general different from the local interaction strength J1, and examine its relaxation behaviors as well as phase transitions. As J(2)/J(1) is raised from zero, the critical temperature also increases, manifesting contributions of long-range interactions to ordering. However, it becomes saturated eventually at large values of J(2)/J(1) and the system is found to display very slow relaxation, revealing that ordering dynamics is inhibited rather than facilitated by strong long-range interactions. To circumvent this problem, we propose a modified updating algorithm in Monte Carlo simulations, assisting the system to reach equilibrium quickly.
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Choi MY, Dong F, Miller RE. Multiple tautomers of cytosine identified and characterized by infrared laser spectroscopy in helium nanodroplets: probing structure using vibrational transition moment angles. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2005; 363:393-413. [PMID: 15664890 DOI: 10.1098/rsta.2004.1499] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Infrared laser spectroscopy in helium nanodroplets is used to identify and characterize several distinct tautomers of cytosine. The experimentally observed species correspond to the lowest-energy structures obtained from ab initio calculations, also reported here. The assignment of the infrared vibrational bands in the spectra is aided by the measurement of the corresponding vibrational transition moment angles, which are also calculated using ab initio methods. In the present study we confirm the existence of three primary tautomers and provide tentative assignments for even higher-energy forms of cytosine in helium nanodroplets.
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Shim Y, Choi MY, Kim HJ. A molecular dynamics computer simulation study of room-temperature ionic liquids. I. Equilibrium solvation structure and free energetics. J Chem Phys 2005; 122:44510. [PMID: 15740270 DOI: 10.1063/1.1819317] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Solvation in 1-ethyl-3-methylmidazolium chloride and in 1-ethyl-3-methylimidazolium hexafluorophosphate near equilibrium is investigated via molecular dynamics computer simulations with diatomic and benzenelike molecules employed as probe solutes. It is found that electrostriction plays an important role in both solvation structure and free energetics. The angular and radial distributions of cations and anions become more structured and their densities near the solute become enhanced as the solute charge separation grows. Due to the enhancement in structural rigidity induced by electrostriction, the force constant associated with solvent configuration fluctuations relevant to charge shift and transfer processes is also found to increase. The effective polarity and reorganization free energies of these ionic liquids are analyzed and compared with those of highly polar acetonitrile. Their screening behavior of electric charges is also investigated.
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Shim Y, Choi MY, Kim HJ. A molecular dynamics computer simulation study of room-temperature ionic liquids. II. Equilibrium and nonequilibrium solvation dynamics. J Chem Phys 2005; 122:44511. [PMID: 15740271 DOI: 10.1063/1.1819318] [Citation(s) in RCA: 102] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
The molecular dynamics (MD) simulation study of solvation structure and free energetics in 1-ethyl-3-methylimidazolium chloride and 1-ethyl-3-methylimidazolium hexafluorophosphate using a probe solute in the preceding article [Y. Shim, M. Y. Choi and H. J. Kim, J. Chem. Phys. 122, 044510 (2005)] is extended to investigate dynamic properties of these liquids. Solvent fluctuation dynamics near equilibrium are studied via MD and associated time-dependent friction is analyzed via the generalized Langevin equation. Nonequilibrium solvent relaxation following an instantaneous change in the solute charge distribution and accompanying solvent structure reorganization are also investigated. Both equilibrium and nonequilibrium solvation dynamics are characterized by at least two vastly different time scales--a subpicosecond inertial regime followed by a slow diffusive regime. Solvent regions contributing to the subpicosecond nonequilibrium relaxation are found to vary significantly with initial solvation configurations, especially near the solute. If the solvent density near the solute is sufficiently high at the outset of the relaxation, subpicosecond dynamics are mainly governed by the motions of a few ions close to the solute. By contrast, in the case of a low local density, solvent ions located not only close to but also relatively far from the solute participate in the subpicosecond relaxation. Despite this difference, linear response holds reasonably well in both ionic liquids.
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Choi MY, Miller RE. Multiple isomers of uracil–water complexes: infrared spectroscopy in helium nanodroplets. Phys Chem Chem Phys 2005; 7:3565-73. [PMID: 16294232 DOI: 10.1039/b507100c] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Infrared laser spectroscopy is used to show that four structural isomers of the uracil-water binary complex are formed in helium nanodroplets. The assignment of the infrared spectra is aided by measurements of vibrational transition moment angles (VTMAs) for various vibrational modes of these complexes. The experimental results are in excellent agreement with ab initio calculations, which had previously predicated the existence of the same four isomers. The results suggest that the relative abundances of the various isomers formed in helium droplets have more to do with the widths of the valleys in the potential surface that funnel into a particular local minimum than on the associated energetics.
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Hong H, Park H, Choi MY. Collective phase synchronization in locally coupled limit-cycle oscillators. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 70:045204. [PMID: 15600451 DOI: 10.1103/physreve.70.045204] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2003] [Indexed: 05/24/2023]
Abstract
We study collective behavior of locally coupled limit-cycle oscillators with scattered intrinsic frequencies on d -dimensional lattices. A linear analysis shows that the system should always be desynchronized up to d=4 . On the other hand, numerical investigation for d=5 and d=6 reveals the emergence of the synchronized (ordered) phase via a continuous transition from the fully random desynchronized phase. This demonstrates that the lower critical dimension for the phase synchronization in this system is d(l) =4 .
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Hong H, Kim BJ, Choi MY, Park H. Factors that predict better synchronizability on complex networks. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 69:067105. [PMID: 15244784 DOI: 10.1103/physreve.69.067105] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2003] [Revised: 03/04/2004] [Indexed: 05/24/2023]
Abstract
While shorter characteristic path length has in general been believed to enhance synchronizability of a coupled oscillator system on a complex network, the suppressing tendency of the heterogeneity of the degree distribution, even for shorter characteristic path length, has also been reported. To see this, we investigate the effects of various factors such as the degree, characteristic path length, heterogeneity, and betweenness centrality on synchronization, and find a consistent trend between the synchronization and the betweenness centrality. The betweenness centrality is thus proposed as a good indicator for synchronizability.
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Kim MJ, Choi MY, Lee JK, Ahn Y. Enzymatic selective acylation of glycosides in ionic liquids: significantly enhanced reactivity and regioselectivity. ACTA ACUST UNITED AC 2003. [DOI: 10.1016/j.molcatb.2003.04.001] [Citation(s) in RCA: 80] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Choi MY, Choi J. Stability and ensemble inequivalence in a globally coupled system. PHYSICAL REVIEW LETTERS 2003; 91:124101. [PMID: 14525365 DOI: 10.1103/physrevlett.91.124101] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2003] [Indexed: 05/24/2023]
Abstract
We consider a system of globally coupled rotors, described by a set of Langevin equations, and examine the stability of the incoherent phase. The corresponding Fokker-Planck equation, providing a unified description of microcanonical and canonical ensembles, bears a few solutions, depending upon the ensemble. It is found that the stability of each solution varies differently with the temperature, revealing the inequivalence between the two ensembles. This also suggests a physical explanation of the quasistationarity observed in recent numerical results.
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Jeong D, Hong H, Kim BJ, Choi MY. Phase transition in the Ising model on a small-world network with distance-dependent interactions. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2003; 68:027101. [PMID: 14525147 DOI: 10.1103/physreve.68.027101] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2003] [Indexed: 05/24/2023]
Abstract
We study the collective behavior of an Ising system on a small-world network with the interaction J(r) proportional to r(-alpha), where r represents the Euclidean distance between two nodes. In the case of alpha=0 corresponding to the uniform interaction, the system is known to possess a phase transition of the mean-field nature, while the system with the short-range interaction (alpha-->infinity) does not exhibit long-range order at any finite temperature. The Monte Carlo simulations are performed at various values of alpha, and the critical value alpha(c) beyond which the long-range order does not emerge is estimated to be 0. Thus, concluded is the absence of a phase transition in the system with the algebraically decaying interaction r(-alpha) for any nonzero positive value of alpha.
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