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Number Citation Analysis
26
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hannigan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sović I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli KP, Shapiro B, Johnson WE, Di Palma F, Marques-Bonet T, Teeling EC, Warnow T, Graves JM, Ryder OA, Haussler D, O'Brien SJ, Korlach J, Lewin HA, Howe K, Myers EW, Durbin R, Phillippy AM, Jarvis ED. Towards complete and error-free genome assemblies of all vertebrate species. Nature 2021;592:737-746. [PMID: 33911273 PMCID: PMC8081667 DOI: 10.1038/s41586-021-03451-0] [Citation(s) in RCA: 690] [Impact Index Per Article: 230.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 03/12/2021] [Indexed: 02/02/2023]
27
Borzée A, Kielgast J, Wren S, Angulo A, Chen S, Magellan K, Messenger KR, Hansen-Hendrikx CM, Baker A, Santos MMD, Kusrini M, Jiang J, Maslova IV, Das I, Park D, Bickford D, Murphy RW, Che J, Van Do T, Nguyen TQ, Chuang MF, Bishop PJ. Using the 2020 global pandemic as a springboard to highlight the need for amphibian conservation in eastern Asia. BIOLOGICAL CONSERVATION 2021;255:108973. [PMID: 35125500 PMCID: PMC8798316 DOI: 10.1016/j.biocon.2021.108973] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 12/28/2020] [Accepted: 01/11/2021] [Indexed: 05/26/2023]
28
Nguyen SN, Nguyen VDH, Nguyen LT, Murphy RW. A new skink of the genus Scincella Mittleman, 1950 (Squamata: Scincidae) from southern Vietnam. Zootaxa 2020;4868:zootaxa.4868.3.6. [PMID: 33311393 DOI: 10.11646/zootaxa.4868.3.6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Indexed: 11/04/2022]
29
Lovich JE, Edwards T, Berry KH, Puffer SR, Cummings KL, Ennen JR, Agha M, Woodard R, Brundige KD, Murphy RW. Refining genetic boundaries for Agassiz’s desert tortoise (Gopherus agassizii) in the western Sonoran Desert: the influence of the Coachella Valley on gene flow among populations in southern California. FRONTIERS OF BIOGEOGRAPHY 2020. [DOI: 10.21425/f5fbg46888] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]  Open
30
Ananjeva NB, Ermakov OA, Nguyen SN, Nguyen TT, Murphy RW, Lukonina SA, Orlov NL. A New Species of Acanthosaura Gray, 1831 (Squamata: Agamidae) from Central Highlands, Vietnam. RUSS J HERPETOL 2020. [DOI: 10.30906/1026-2296-2020-27-4-217-230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
31
Sánchez-Pacheco SJ, Kong S, Pulido-Santacruz P, Murphy RW, Kubatko L. Median-joining network analysis of SARS-CoV-2 genomes is neither phylogenetic nor evolutionary. Proc Natl Acad Sci U S A 2020;117:12518-12519. [PMID: 32381733 PMCID: PMC7293637 DOI: 10.1073/pnas.2007062117] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
32
Vergun AA, Girnyk AE, Korchagin VI, Semyenova SK, Arakelyan MS, Danielyan FD, Murphy RW, Ryskov AP. Origin, clonal diversity, and evolution of the parthenogenetic lizard Darevskia unisexualis. BMC Genomics 2020;21:351. [PMID: 32393253 PMCID: PMC7216553 DOI: 10.1186/s12864-020-6759-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Accepted: 04/28/2020] [Indexed: 11/10/2022]  Open
33
Luo J, Chai J, Wen Y, Tao M, Lin G, Liu X, Ren L, Chen Z, Wu S, Li S, Wang Y, Qin Q, Wang S, Gao Y, Huang F, Wang L, Ai C, Wang X, Li L, Ye C, Yang H, Luo M, Chen J, Hu H, Yuan L, Zhong L, Wang J, Xu J, Du Z, Ma Z(S, Murphy RW, Meyer A, Gui J, Xu P, Ruan J, Chen ZJ, Liu S, Lu X, Zhang YP. From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish. SCIENCE ADVANCES 2020;6:eaaz7677. [PMID: 32766441 PMCID: PMC7385415 DOI: 10.1126/sciadv.aaz7677] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Accepted: 03/20/2020] [Indexed: 05/27/2023]
34
Lu C, Chai J, Murphy RW, Che J. Giant salamanders: Farmed yet endangered. Science 2020;367:989. [PMID: 32108104 DOI: 10.1126/science.abb2375] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
35
Rahman MM, Chen JM, Wu YH, Chen HM, Lwin YH, Murphy RW, Li GG, Che J. New country records for three species of frog from Myanmar including two genera (Nasutixalus and Oreolalax). Zootaxa 2020;4742:zootaxa.4742.3.7. [PMID: 32230368 DOI: 10.11646/zootaxa.4742.3.7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Indexed: 11/04/2022]
36
Chen S, Qing J, Liu Z, Liu Y, Tang M, Murphy RW, Pu Y, Wang X, Tang K, Guo K, Jiang X, Liu S. Multilocus phylogeny and cryptic diversity of white-toothed shrews (Mammalia, Eulipotyphla, Crocidura) in China. BMC Evol Biol 2020;20:29. [PMID: 32059644 PMCID: PMC7023792 DOI: 10.1186/s12862-020-1588-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Accepted: 01/27/2020] [Indexed: 12/23/2022]  Open
37
Liu Q, Yan JW, Hou SB, Wang P, Nguyen SN, Murphy RW, Che J, Guo P. A new species of the genus <italic>Sinomicrurus</italic> (Serpentes: Elapidae) from China and Vietnam. Zool Res 2020;41:194-198. [PMID: 32125101 PMCID: PMC7109021 DOI: 10.24272/j.issn.2095-8137.2020.023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
38
Kilunda FK, Conradie W, Wasonga DV, Jin JQ, Peng MS, Murphy RW, Malonza PK, Che J. Revalidation and resurrection of Panaspis massaiensis (Angel, 1924) and the description of a new species of Panaspis Cope (Squamata: Scincidae) from south-eastern Kenya. Zootaxa 2019;4706:zootaxa.4706.2.3. [PMID: 32230541 DOI: 10.11646/zootaxa.4706.2.3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Indexed: 11/04/2022]
39
Wu YH, Suwannapoom C, Poyarkov NA, Pawangkhanant P, Xu K, Jin JQ, Murphy RW, Che J. A new species of the genus Xenophrys Anura Megophryidae from northern Thailand. Zool Res 2019;40:564-574. [PMID: 31631591 PMCID: PMC6822929 DOI: 10.24272/j.issn.2095-8137.2019.032] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
40
Wu YH, Suwannapoom C, Xu K, Chen JM, Jin JQ, Chen HM, Murphy RW, Che J. A new species of the genus Raorchestes (Anura: Rhacophoridae) from Yunnan Province, China. Zool Res 2019;40:558-563. [PMID: 31631588 PMCID: PMC6822928 DOI: 10.24272/j.issn.2095-8137.2019.066] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
41
Zhang ML, Li ML, Ayoola AO, Murphy RW, Wu DD, Shao Y. Conserved sequences identify the closest living relatives of primates. Zool Res 2019;40:532-540. [PMID: 31393097 PMCID: PMC6822925 DOI: 10.24272/j.issn.2095-8137.2019.057] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
42
Burbrink FT, Grazziotin FG, Pyron RA, Cundall D, Donnellan S, Irish F, Keogh JS, Kraus F, Murphy RW, Noonan B, Raxworthy CJ, Ruane S, Lemmon AR, Lemmon EM, Zaher H. Interrogating Genomic-Scale Data for Squamata (Lizards, Snakes, and Amphisbaenians) Shows no Support for Key Traditional Morphological Relationships. Syst Biol 2019;69:502-520. [DOI: 10.1093/sysbio/syz062] [Citation(s) in RCA: 119] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 09/05/2019] [Accepted: 09/10/2019] [Indexed: 12/15/2022]  Open
43
Guo X, Li YQ, Wang MS, Wang ZB, Zhang Q, Shao Y, Jiang RS, Wang S, Ma CD, Murphy RW, Wang GQ, Dong J, Zhang L, Wu DD, Du BW, Peng MS, Zhang YP. A parallel mechanism underlying frizzle in domestic chickens. J Mol Cell Biol 2019;10:589-591. [PMID: 29868726 DOI: 10.1093/jmcb/mjy037] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Accepted: 06/04/2018] [Indexed: 01/27/2023]  Open
44
Turvey ST, Marr MM, Barnes I, Brace S, Tapley B, Murphy RW, Zhao E, Cunningham AA. Historical museum collections clarify the evolutionary history of cryptic species radiation in the world's largest amphibians. Ecol Evol 2019;9:10070-10084. [PMID: 31624538 PMCID: PMC6787787 DOI: 10.1002/ece3.5257] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 04/02/2019] [Accepted: 04/13/2019] [Indexed: 11/06/2022]  Open
45
Nguyen SN, Nguyen VDH, Nguyen LT, Murphy RW. A new skink of the genus Scincella Mittleman, 1950 (Squamata: Scincidae) from Ba Den Mountain, Tay Ninh Province, southern Vietnam. Zootaxa 2019;4648:zootaxa.4648.2.4. [PMID: 31716948 DOI: 10.11646/zootaxa.4648.2.4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Indexed: 11/04/2022]
46
Zaher H, Murphy RW, Arredondo JC, Graboski R, Machado-Filho PR, Mahlow K, Montingelli GG, Quadros AB, Orlov NL, Wilkinson M, Zhang YP, Grazziotin FG. Correction: Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes). PLoS One 2019;14:e0217959. [PMID: 31150527 PMCID: PMC6544309 DOI: 10.1371/journal.pone.0217959] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
47
Nguyen SN, Jin JQ, Vo BD, Nguyen LT, Zhou WW, Che J, Murphy RW, Zhang YP. A new species of Acanthosaura Gray 1831 (Reptilia: Agamidae) from central Vietnam. Zootaxa 2019;4612:zootaxa.4612.4.7. [PMID: 31717043 DOI: 10.11646/zootaxa.4612.4.7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Indexed: 11/04/2022]
48
Zaher H, Murphy RW, Arredondo JC, Graboski R, Machado-Filho PR, Mahlow K, Montingelli GG, Quadros AB, Orlov NL, Wilkinson M, Zhang YP, Grazziotin FG. Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes). PLoS One 2019;14:e0216148. [PMID: 31075128 PMCID: PMC6512042 DOI: 10.1371/journal.pone.0216148] [Citation(s) in RCA: 73] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 04/15/2019] [Indexed: 11/29/2022]  Open
49
Luo W, Tian L, Huang C, Li J, Shen X, Murphy RW, Liao M, Shen Y. The codon usage bias of avian influenza A viruses. J Infect 2019;79:174-187. [PMID: 31075292 DOI: 10.1016/j.jinf.2019.05.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 05/04/2019] [Indexed: 12/25/2022]
50
Nneji LM, Adeola AC, Yan F, Okeyoyin AO, Oladipo OC, Saidu Y, Samuel D, Nneji IC, Adeyi AO, Onadeko AB, Olagunju TE, Omotoso O, Oladipo SO, Iyiola OA, Usongo JY, Auta T, Usman AD, Abdullahi H, Ikhimiukor OO, Zhou WW, Jin JQ, Ugwumba OA, Ugwumba AAA, Peng MS, Murphy RW, Che J. Genetic variation and cryptic lineage diversity of the Nigerian red-headed rock agama Agama agama associate with eco-geographic zones. Curr Zool 2019;65:713-724. [PMID: 31857818 PMCID: PMC6911843 DOI: 10.1093/cz/zoz002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2018] [Accepted: 01/28/2019] [Indexed: 11/14/2022]  Open
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