Treatment of xylene polluted air using press mud-based biofilter

In the present work, biofiltration of xylene vapors has been investigated on a laboratory scale biofilter packed with press mud as filter material inoculated with activated sludge from pharmaceutical industry. Four various gas flow rates, i.e. 0.03, 0.06, 0.09 and 0.12 m(3) h(-1), were tested for inlet xylene concentration ranging from 0.2 to 1.2 g m(-3). The biofilter proved to be highly efficient in the removal of xylene at a gas flow rate of 0.2m(3) h(-1) corresponding to a gas residence time of 2.8 min. For all the tested inlet concentrations, the removal efficiency decreased for high gas flow rates. For all the tested gas flow rates, a decrease in the removal efficiency was noticed for high xylene inlet concentration. The follow-up of carbon dioxide concentration profile through the biofilter revealed that the mass ratio of carbon dioxide produced to the xylene removed was approximately 2.52, which confirms complete degradation of xylene if one considers the fraction of the consumed organic carbon used for the microbial growth.

Quantification of diatom and dinoflagellate biomasses in coastal marine seawater samples by real-time PCR

Two real-time PCR assays targeting the small-subunit (SSU) ribosomal DNA (rDNA) were designed to assess the proportional biomass of diatoms and dinoflagellates in marine coastal water. The reverse primer for the diatom assay was designed to be class specific, and the dinoflagellate-specific reverse primer was obtained from the literature. For both targets, we used universal eukaryotic SSU rDNA forward primers. Specificity was confirmed by using a BLAST search and by amplification of cultures of various phytoplankton taxa. Reaction conditions were optimized for each primer set with linearized plasmids from cloned SSU rDNA fragments. The number of SSU rDNA copies per cell was estimated for six species of diatoms and nine species of dinoflagellates; these were significantly correlated to the biovolumes of the cells. Nineteen field samples were collected along the Swedish west coast and subjected to the two real-time PCR assays. The linear regression of the proportion of SSU rDNA copies of dinoflagellate and diatom origin versus the proportion of dinoflagellate and diatom biovolumes or biomass per liter was significant. For diatoms, linear regression of the number of SSU rDNA copies versus biovolume or biomass per liter was significant, but no such significant correlation was detected in the field samples for dinoflagellates. The method described will be useful for estimating the proportion of dinoflagellate versus diatom biovolume or biomass and the absolute diatom biovolume or biomass in various aquatic disciplines.

A mathematical model for a hybrid anaerobic reactor

A mathematical model for a hybrid anaerobic reactor (HAR), which uses self-immobilized anaerobic bacterial granules under completely fluidized condition, has been developed. Stoichiometry of glucose fermentation into methane has been considered in this model. The model includes: (1) a biofilm model which describes substrate conversion kinetics within a single granule; (2) a bed fluidization model which describes the distribution of biogranules within the fluidized bed and (3) a reactor model which links the above two to predict the substrate and products concentration profile along the reactor height. Product and pH inhibition for each group of bacteria has been considered in the kinetic model. The spatial distribution of each group of anaerobic bacteria within granules has been found to play a vital role in bringing about the conversion. Experiments were conducted in the reactor using a synthetic effluent containing glucose as the carbon source to study the treatment efficiency. The model was simulated first assuming a 3-layered distribution [MacLeod, F.A., Guiot, S.R., Costerton, J.W., 1990. Layered structure of bacterial aggregates produced in an upflow anaerobic sludge bed and filter reactor. Applied and Environmental Microbiology 56, 1598-1607.] of anaerobic bacteria within granules and then homogeneous distribution [Grotenhuis, J.T.C., Smit, M., Plugge, C.M., Yuansheng, X., van Lammeren, A.A.M., Stams, A.J.M., Zehnder, A.J.B., 1991. Bacterial composition and structure of granular sludge adapted to different substrates. Applied and Environmental Microbiology 57, 1942-1949.] of anaerobic bacteria. The predictions of model simulation with the assumption of layered structure closely represented the experimental data.

Putative virulence genes of Vibrio cholerae from seafoods and the coastal environment of Southwest India

Shrimp, clam and oysters were obtained at two fish markets and at a fish landing dock, and plankton, water and sediment samples were obtained from four river estuaries, in southern India. The samples were analyzed for Vibrio cholerae by conventional isolation techniques and by polymerase chain reaction (PCR) procedures. V. cholerae was isolated from 2 of 5 shrimp, 2 of 5 clam and 5 of 20 water samples. All biochemically confirmed isolates of V. cholerae were positive for toxR. For direct detection of V. cholerae in enrichment broths, PCR was performed using lysates from 0 and 6 h enrichments. All the V. cholerae isolates and enrichment broth lysates were subjected to PCR analysis for the detection of the genes toxR, ctxA, tcpA, ompU, hly, ace, Nag-ST (stn/sto), and ompU. Enrichment broths of all the samples which yielded V. cholerae were positive for toxR, OmpU and hlyA genes, while one of a fresh fish market sample was positive for the ace gene. Choleragenic V. cholerae were absent from all environmental samples and fresh fish from the markets, but one sample of shrimp was positive for V. cholerae O139.

Formation and hydrodynamic characteristics of aerobic granules in an activated sludge system

Development of aerobic granules in the aeration tank of an activated sludge system has been studied. The introduction of activated carbon particles into the aeration tank resulted in the formation of biogranules containing activated carbon as core nuclei. The presence of activated carbon also induced the formation of self-immobilized granules, which did not have any carrier particle at their core. The presence of aerobic granules enhanced the treatment efficiency of the reactor. At an organic loading rate of 32.8 kg COD m(-3)d(-1) and 0.78 h hydraulic retention time (HRT), the reactor showed 96% COD removal efficiency. At an HRT of 0.272 h and organic loading rate of 46.7 kg COD m(-3)d(-1), the reactor outlet COD remained below 100 mg l(-1). Settling velocity studies carried out on the biogranules showed that the drag coefficient of biogranules is greater than that of the rigid particle at the same Reynolds number.

Modelling anaerobic biofilm reactors--a review

Anaerobic treatment has become a technically as well as economically feasible option for treatment of liquid effluents after the development of reactors such as the upflow anaerobic sludge blanket (UASB) reactor, expanded granular sludge bed (EGSB) reactor, anaerobic biofilter and anaerobic fluidized bed reactor (AFBR). Considerable effort has gone into developing mathematical models for these reactors in order to optimize their design, design the process control systems used in their operation and enhance their operational efficiency. This article presents a critical review of the different mathematical models available for these reactors. The unified anaerobic digestion model (ADM1) and its application to anaerobic biofilm reactors are also outlined.

Structural studies on recombinant T = 3 capsids of Sesbania mosaic virus coat protein mutants

When expressed in Escherichia coli, the recombinant coat protein (rCP) of Sesbania mosaic virus (SeMV) was shown to self-assemble into T = 3 capsids encapsidating CP mRNA and 23S rRNA derived from the host. Expression of CP-P53A, in which a conserved proline at position 53 in the beta-annulus was substituted by alanine (CP-P53A), also produced similar capsids. Purified rCP and CP-P53A particles were crystallized and X-ray crystal structures of their mutant capsids were determined to resolutions of 3.6 and 4.1 A, respectively. As in the native viral CP, the CPs in these recombinant capsids adopt the jelly-roll beta-sandwich fold. The amino-terminal residues of the C subunits alone are ordered and form the beta-annulus structure at the quasi-sixfold axes. A characteristic bend in the beta-annulus remains unaffected in CP-P53A. The quasi-threefold interfaces of the capsids harbour calcium ions coordinated by ligands from the adjacent threefold-related subunits in a geometry that is analogous to that observed in the native capsid. Taken together with studies on deletion and substitution mutants of SeMV CP, these results suggest the possibility that the beta-annulus and nucleic acid-mediated interactions may be less important for the assembly of sobemoviruses than previously envisaged.

Hydrodynamic study of biogranules obtained from an anaerobic hybrid reactor

The bed expansion characteristics of a fluidized bed containing bacterial granules have been studied. These biogranules were obtained from an anaerobic hybrid reactor, which uses biogranules (without carrier particle) in fluidized condition. The settling velocity study of biogranules has shown that the drag coefficient of biogranule is greater than that of the rigid particle at the same Reynolds number. A new correlation based on this finding has been developed. The bed expansion study has demonstrated that a linear relationship exists between the natural logarithm of bed porosity and the natural logarithm of upflow superficial liquid velocity for the bed containing either a particular fraction of biogranule size or biogranules with wide size distribution. For a fluidized bed having a particular granule size, the bed porosity, and liquid superficial velocity could be related by the classic equation suggested by Richardson and Zaki (1954). The characteristic parameter of this correlation, the slope of the line n, has been related with Reynolds number. The intercept of the line gave a smaller value than the unhindered settling velocity of the particle. For fluidized bed having wide size distribution, the characteristic parameter n could not be related to Reynolds number. But the correlation suggested for single biogranule size has been found to predict n value with an average error of 2.3%.

Role of metal ion-mediated interactions in the assembly and stability of Sesbania mosaic virus T=3 and T=1 capsids

Sesbania mosaic virus (SeMV) capsids are stabilized by RNA-protein, protein-protein and calcium-mediated protein-protein interactions. The removal of calcium has been proposed to be a prerequisite for the disassembly of the virus. The crystal structure of native T=3 SeMV capsid revealed that residues D146 and D149 from one subunit and Y205, N267 and N268 of the neighboring subunit form the calcium-binding site (CBS). The CBS environment is found to be identical even in the recombinant CP-NDelta65 T=1 capsids. Here, we have addressed the role of calcium and the residues involved in calcium co-ordination in the assembly and stability of T=3 and T=1 capsids by mutational analysis. Deletion of N267 and N268 did not affect T=3 or T=1 assembly, although the capsids were devoid of calcium, suggesting that assembly does not require calcium ions. However, the stability of the capsids was reduced drastically. Site-directed mutagenesis revealed that either a single mutation (D149N) or a double mutation (D146N-D149N) of SeMV coat protein affected drastically both the assembly and stability of T=3 capsids. On the other hand, the D146N-D149N mutation in CP-NDelta65 did not affect the assembly of T=1 capsid, although their stability was reduced considerably. Since the major difference between the T=3 and T=1 capsids is the absence of the N-terminal arginine-rich motif (N-ARM) and the beta-annulus from the subunits forming the T=1 capsids, it is possible that D149 initiates the N-ARM-RNA interactions that lead to the formation of the beta-annulus, which is essential for T=3 capsid assembly.

T=1 capsid structures of Sesbania mosaic virus coat protein mutants: determinants of T=3 and T=1 capsid assembly

Sesbania mosaic virus particles consist of 180 coat protein subunits of 29kDa organized on a T=3 icosahedral lattice. N-terminal deletion mutants of coat protein that lack 36 (CP-NDelta36) and 65 (CP-NDelta65) residues from the N terminus, when expressed in Escherichia coli, produced similar T=1 capsids of approximate diameter 20nm. In contrast to the wild-type particles, these contain only 60 copies of the truncated protein subunits (T=1). CP-NDelta65 lacks the "beta-annulus" believed to be responsible for the error-free assembly of T=3 particles. Though the CP-NDelta36 mutant has the beta-annulus segment, it does not form a T=3 capsid, presumably because it lacks an arginine-rich motif found close to the amino terminus. Both CP-NDelta36 and CP-NDelta65 T=1 capsids retain many key features of the T=3 quaternary structure. Calcium binding geometries at the coat protein interfaces in these two particles are also nearly identical. When the conserved aspartate residues that coordinate the calcium, D146 and D149 in the CP-NDelta65, were mutated to asparagine (CP-NDelta65-D146N-D149N), the subunits assembled into T=1 particles but failed to bind calcium ions. The structure of this mutant revealed particles that were slightly expanded. The analysis of the structures of these mutant capsids suggests that although calcium binding contributes substantially to the stability of T=1 particles, it is not mandatory for their assembly. In contrast, the presence of a large fraction of the amino-terminal arm including sequences that precede the beta-annulus and the conserved D149 appear to be indispensable for the error-free assembly of T=3 particles.