Impacts of biogenic emissions from urban landscapes on summer ozone and secondary organic aerosol formation in megacities

The impact of biogenic emissions on ozone and secondary organic aerosol (SOA) has been widely acknowledged; nevertheless, biogenic emissions emitted from urban landscapes have been largely ignored. We find that including urban isoprene in megacities like Beijing improves not only the modeled isoprene concentrations but also its diurnal cycle. Specifically, the mean bias of the simulated isoprene concentrations is reduced from 87% to 39% by adding urban isoprene emissions while keeping the diurnal cycle the same as that in non-urban or rural areas. Further adjusting the diurnal cycle of isoprene emissions to the urban profile steers the original early morning peak of the isoprene concentration to a double quasi-peak, i.e., bell shape, consistent with observations. The efficiency of ozone generation caused by isoprene emissions in urban Beijing is found to be twice as large as those in rural areas, indicative of vital roles of urban BVOC emissions in modulating the ozone formation. Our study also shows that in the future along with NOx emission reduction, isoprene emissions from urban landscapes will become more important for the formation of ozone in urban area, and their contributions may exceed that of isoprene caused by transport from rural areas. Finally, the impact of biogenic emissions on SOA is examined, revealing that biogenic induced SOA accounts for 16% of the total SOA in urban Beijing. The effect of isoprene on SOA (iSOA) is modulated through two pathways associated with the abundance of NOx emissions, and the effect can be amplified in future when NOx emissions are reduced. The findings of our study are not limited to Beijing but also apply to other megacities or densely populated regions, suggesting an urgent need to construct an accurate emission inventory for urban landscapes and evaluate their impact on ozone and SOA in air quality planning and management.

Vacuum ultraviolet photoabsorption spectra of icy isoprene and its oligomers

Isoprene and its oligomers, terpenes, are expected to be present, along with other complex organic molecules in the diverse environments of the ISM and in our solar system. Due to insufficient spectral information of these molecules at low temperature, detection and understanding the importance of these molecules has been rather incomplete. For this purpose, we have carried out the vacuum ultraviolet (VUV) photoabsorption measurements on pure molecular ices of isoprene and a few simple terpenes: limonene, α-pinene and β-pinene by forming icy mantles on cold dust analogs. From these experiments, we report the first low temperature (10 K) VUV spectra of isoprene and its oligomers limonene, α-pinene and β-pinene. VUV photoabsorption spectra of all the molecules reported here reveal similarities in the ice and gas phase as expected, with an exception of isoprene where a prominent red shift is observed in the ice phase absorption. This unqiue property of isoprene along with distinctive absorption at longer wavelengths supports its candidature for detection on icy bodies.

Whole-plant compensatory responses of isoprene emission from hybrid poplar seedlings exposed to elevated ozone

It is still unclear whether the responses of isoprene (ISO) emission to elevated O₃ vary with biological organization level (i.e. leaf and whole-plant). To study such responses and the possible reasons explaining their variation, we investigated the effect of O₃ (CF: charcoal-filtered ambient air; E-O₃: non-filtered ambient air enriched with O₃) on ISO emission rate (ISO_rate), net photosynthetic rate (Pn), leaf nitrogen and carbon contents, and leaf growth traits in poplar seedlings (Populus deltoides cv. 55/56 × P. deltoides cv. Imperial) during one growing season. Opposite effects of E-O₃ on Pn were found between upper leaves (positive effect) and lower leaves (negative effect). Compared to CF, E-O₃ significantly decreased leaf mass per area, number of leaves, and leaf biomass, but increased leaf nitrogen content and individual leaf size. In the framework of such compensatory responses, poplar seedlings further increased ISO_rate in upper leaves and decreased ISO_rate in lower leaves, thus preventing significant decrease in the overall whole-plant ISO_rate by E-O₃. The measured whole-plant ISO_rate also showed that the simplistic estimation approaches based on the linear regression between chlorophyll content indicated by soil plant analysis development meter (SPAD value) and leaf-level ISO_rate could not accurately reflect the true response of whole plant to elevated O₃. For more accurate predictions, the potential ISO compensatory response to increasing O₃ concentration should be incorporated into the climate biogeochemical models related to ISO emission.

Observational insights into the compound environmental effect for 2-methyltetrols formation under humid ambient conditions

Laboratory experiments suggest acid-catalyzed aqueous-phase production can promote the formation of isoprene SOA, i.e., 2-methyltetrols. In this study we use ambient observations of the 2-methyltetrols along with other chemical measurements, as well as meteorological factors to investigate the relative importance of environmental influence for isoprene epoxydiols (IEPOX) SOA formation under atmospheric humidity conditions. The 2-Methyltetrols revealed good relationships with temperature and total solar radiation, but were weakly correlated with aerosol acidity and SO₄^2-. EC-scaled 2-methyltetrols were observed to vary in a narrow pH range (1.5-2.0), indicating aerosol acidity was not a limiting factor for 2-methyltetrols formation. High values of 2-methyltetrols were consistently observed at high total solar radiation, the strong dependence of total solar radiation demonstrated that photochemical processes dominated 2-methyltetrols formation in humid environments. Although 2-methyltetrols can be enhanced by acid-catalyzed aqueous-phase reactions, it is not sufficient to compensate the synchronously weakened photochemical activity influence, leading to an obvious net decrease in the formation of 2-methyltetrols in the ambient. Moreover, aerosol droplet acidity was reduced under high liquid water content (LWC) condition, subsequently diminishing the enhancement of SOA formation by acidity. Overall, our results highlight that the environmental impact factors are highly variable and interplay, influencing the production of 2-methyltetrols, and suggest that the formation pathway of 2-methyltetrols is insensitive to aerosol acidity but dominated by photochemical production process in humid environments.

On the impact of side methyl groups on the structure and vibrational properties of β-carotenoids. The case of butadiene and isoprene

Theoretical consideration about the impact of methyl groups on the structure and vibrational properties of β-carotenoids, using medium size molecules of trans-butadiene and trans-isoprene, are reported. Density functional theory (DFT) calculations with correlation-consistent and polarization-consistent basis sets were applied to trans-1,3-butadiene and trans-isoprene as the smallest building bricks of β-carotenoids. Their structure and harmonic vibrations were estimated in the complete basis set limit (CBS) using the non-linear least square fit. Optimized geometries and harmonic frequencies, obtained with B3LYP and BLYP density functionals and large basis sets, were favorably reproduced by a significantly faster approach, using a recently modified STO(1M)-3G Slater-type basis set. Selected density functionals with STO(1M)-3G and 6-311++G** basis sets were also successful in predicting β-carotene structures and harmonic vibrations. This work demonstrates the potential applicability of the proposed level of theory for larger molecules, including β-carotenoids, present in numerous natural food sources. The proposed scheme of molecular modeling, applied to biologically active compounds in food, could provide a deeper insight into their function in vivo, which is directly related to their structure and spectroscopic properties. It could also support the experimental qualitative analysis, based on peak assignment of β-carotenoids in various food sources.

New mechanistic understanding for atmospheric oxidation of isoprene initiated by atomic chlorine

Isoprene is the most abundant non-methane VOC and a significant SOA contributor. The atmospheric oxidation initiated by atomic chlorine is an important sink for isoprene, especially in certain regions with high Cl concentration, while its detailed oxidation mechanism remains unclear. In this work, we comprehensively investigated the reaction mechanism of isoprene with Cl using quantum chemistry calculation, and first elaborated the specific reaction mechanisms of chloroalkenyl peroxy radicals with HO₂/NO and the formation of 2-methylbut-3-enal, highlighting their important roles in the SOA formation. For the initial reactions, Cl additions to terminal carbons and H abstraction from CH₃ moiety of isoprene are the predominant reactions, which is consistent with previous research. Following the initial reactions, their subsequent reactions with O₂ and HO₂ (or NO) under different atmospheric conditions could lead to the formation of 17 highly oxidized molecules (HOMs), of which P10, P12, P16, P17, P19 and P33 generated by the subsequent reactions of the major first-generation products (MVK, CMBO, CMBA and MBO) have been detected in the reaction process of isoprene with Cl in the chamber experiment. In addition to auto-oxidation process, the reaction of chloroalkenyl peroxy radicals with HO₂/NO and their subsequent reactions are all easy to occur under atmospheric conditions, which could be crucial contributors to the formation of HOMs and SOA arising from the Cl initiated oxidation of isoprene. This study would be conducive to clarifying the atmospheric oxidation process of isoprene initiated by Cl and providing a new understanding of its SOA formation.

Season-wise analyses of VOCs, hydroxyl radicals and ozone formation chemistry over north-west India reveal isoprene and acetaldehyde as the most potent ozone precursors throughout the year

The north-west Indo-Gangetic Plain is the agricultural cereal-basket of India owing to its prolific wheat and rice production. Surface ozone pollution is of growing concern over it, yet no detailed year-round in-situ measurements of its most reactive precursors, particularly the volatile organic compounds (VOCs) are available from this region. Here, using the first year-long continuous measurements of 23 major VOCs, ozone, NO_x, CO and their atmospheric oxidation products from a regionally representative site in north-west India, we evaluated speciated OH reactivities (OHR), ozone formation potential (OFP) and ozone production regimes (OPR) across all seasons. The average seasonal OHR ranged from 14 s^-1 (winter) to 21.5 s^-1 (summer). We provide the first estimate of OH radical mixing ratios varying between 0.06 and 0.37 ppt in different seasons for the peak daytime hours in this region. Recycling via HO₂+NO was the most important pathway contributing to >85% of the OH production throughout the year. Contrary to satellite derived proxies and chemical transport models which predict NO_x sensitive OPR, we show it to be strongly sensitive to both VOCs and NO_x (>90% days in a year). Remarkably for densely populated regions, isoprene and acetaldehyde collectively accounted for ~30-50% of the total OFP in all seasons. Biogenic emissions of isoprene (reaching 12.9 mg/m²/h) and high acetaldehyde from anthropogenic and photochemical sources were observed for all seasons. Monitoring and control of isoprene and acetaldehyde are therefore urgently required for efforts focused on mitigating surface ozone pollution in this demographically important region of the world.

Dataset for evaluating WRF-Chem sensitivity to biogenic emission inventories in a tropical region. Global online model (MEGAN) vs local offline model (BIGA)

This article presents a dataset comparing emissions of Biogenic Volatile Organic Compounds (BVOC) in a zone of complex topography in the tropical Andes, which presents elevations ranging from 250 to more than 4000 m above sea level in a radius of only 50 km. Two approximations were evaluated, (1) online with the Model of Emissions of Gases and Aerosols from Nature (MEGAN) coupled with the Weather Research and Forecast model with Chemistry (WRF-Chem) and (2) offline applying the Biogenic Altitudinal Gradient Model (BIGA). Modeled concentrations of pollutants (mainly isoprene and tropospheric ozone) were obtained with WRF-Chem employing the biogenic emission models mentioned previously. This information identified areas where BVOC emissions vary significantly, comparing the global emission inventory (MEGAN) and the local inventory (BIGA). Re-evaluation of the emission factors and land cover assigned to those areas in the global online biogenic models should be considered in order to reduce the uncertainty in the values. In addition, the dataset shows the impact of the biogenic emission inventories on the air quality simulations on a tropical high mountain area, where vegetation is diverse, and the altitudinal changes influence meteorological variables.

Review on plant terpenoid emissions worldwide and in China

Biogenic volatile organic compounds (BVOCs), particularly terpenoids, can significantly drive the formation of ozone (O₃) and secondary organic aerosols (SOA) in the atmosphere, as well as directly or indirectly affect global climate change. Understanding their emission mechanisms and the current progress in emission measurements and estimations are essential for the accurate determination of emission characteristics, as well as for evaluating their roles in atmospheric chemistry and climate change. This review summarizes the mechanisms of terpenoid synthesis and release, biotic and abiotic factors affecting their emissions, development of emission observation techniques, and emission estimations from hundreds of published papers. We provide a review of the main observations and estimations in China, which contributes a significant proportion to the total global BVOC emissions. The review suggests the need for further research on the comprehensive effects of environmental factors on terpenoid emissions, especially soil moisture and nitrogen content, which should be quantified in emission models to improve the accuracy of estimation. In China, it is necessary to conduct more accurate measurements for local plants in different regions using the dynamic enclosure technique to establish an accurate local emission rate database for dominant tree species. This will help improve the accuracy of both national and global emission inventories. This review provides a comprehensive understanding of terpenoid emissions as well as prospects for detailed research to accurately describe terpenoid emission characteristics worldwide and in China.

Isoprene-degrading bacteria associated with the phyllosphere of Salix fragilis, a high isoprene-emitting willow of the Northern Hemisphere

BACKGROUND

Isoprene accounts for about half of total biogenic volatile organic compound emissions globally, and as a climate active gas it plays a significant and varied role in atmospheric chemistry. Terrestrial plants are the largest source of isoprene, with willow (Salix) making up one of the most active groups of isoprene producing trees. Bacteria act as a biological sink for isoprene and those bacteria associated with high isoprene-emitting trees may provide further insight into its biodegradation.

RESULTS

A DNA-SIP experiment incubating willow (Salix fragilis) leaves with ¹³C-labelled isoprene revealed an abundance of Comamonadaceae, Methylobacterium, Mycobacterium and Polaromonas in the isoprene degrading community when analysed by 16S rRNA gene amplicon sequencing. Metagenomic analysis of ¹³C-enriched samples confirmed the abundance of Comamonadaceae, Acidovorax, Polaromonas, Variovorax and Ramlibacter. Mycobacterium and Methylobacterium were also identified after metagenomic analysis and a Mycobacterium metagenome-assembled genome (MAG) was recovered. This contained two complete isoprene degradation metabolic gene clusters, along with a propane monooxygenase gene cluster. Analysis of the abundance of the alpha subunit of the isoprene monooxygenase, isoA, in unenriched DNA samples revealed that isoprene degraders associated with willow leaves are abundant, making up nearly 0.2% of the natural bacterial community.

CONCLUSIONS

Analysis of the isoprene degrading community associated with willow leaves using DNA-SIP and focused metagenomics techniques enabled recovery of the genome of an active isoprene-degrading Mycobacterium species and provided valuable insight into bacteria involved in degradation of isoprene on the leaves of a key species of isoprene-emitting tree in the northern hemisphere.

A comparison investigation of atmospheric NMHCs at two sampling sites of Beijing city and a rural area during summertime

Atmospheric non-methane hydrocarbons (NMHCs) were measured synchronously at an urban site of Beijing city (BJ) and a rural site of Dongbaituo (DBT) in Hebei province from 1 July to 15 August 2016. The average concentration of the total NMHCs (TNMHCs) at DBT site were about a factor of 1.3 higher than that at BJ site. Ethane, ethylene, propane, acetylene, butane, isobutane, toluene and isopentane were the common species in the top ten NMHCs at the two sampling sites, and the contributions of the top ten NMHCs to TNMHCs at BJ and DBT sites were 65.6% and 75.1%, respectively. The diurnal variations of TNMHCs at BJ site exhibited one peak during the morning rush hours, whereas two peaks occurred at DBT site during the period from 3:00 to 8:00 (UTC/GMTC8). Based on the correlation coefficients of typical NMHCs pairs and the positive matrix factorization (PMF) results, the gasoline exhaust was found to be the dominant source (38.8%) for atmospheric NMHCs in Beijing, while coal combustion made the largest contribution (32.3%) at the rural site. Atmospheric ozone production over the BJ site was found to be NMHCs-sensitive, while it was in the transition regime at DBT site. Additionally, the largest contributions of atmospheric NMHCs groups to the ozone formation potential at BJ and DBT sites were alkenes and aromatics, with the proportions of 35.8% and 38.6%, respectively.

Metabolic engineering of Yarrowia lipolytica for the production of isoprene

Yarrowia lipolytica has recently emerged as a prominent microbial host for production of terpenoids. Its robust metabolism and growth in wide range of substrates offer several advantages at industrial scale. In the present study, we investigate the metabolic potential of Y. lipolytica to produce isoprene. Sustainable production of isoprene has been attempted through engineering several microbial hosts; however, the engineering studies performed so far are challenged with low titers. Engineering of Y. lipolytica, which have inherent high acetyl-CoA flux could fuel precursors into the biosynthesis of isoprene and thus is an approach that would offer sustainable production opportunities. The present work, therefore, explores this opportunity wherein a codon-optimized IspS gene (single copy) of Pueraria montana was integrated into the Y. lipolytica genome. With no detectable isoprene level during the growth or stationary phase of modified strain, attempts were made to overexpress enzymes from MVA pathway. GC-FID analyses of gas collected during stationary phase revealed that engineered strains were able to produce detectable isoprene only after overexpressing HMGR (or tHMGR). The significant role of HMGR (tHMGR) in diverting the pathway flux toward DMAPP is thus highlighted in our study. Nevertheless, the final recombinant strains overexpressing HMGR (tHMGR) along with Erg13 and IDI showed isoprene titers of ~500 μg/L and yields of ~80 μg/g. Further characterization of the recombinant strains revealed high lipid and squalene content compared to the unmodified strain. Overall, the preliminary results of our laboratory-scale studies represent Y. lipolytica as a promising host for fermentative production of isoprene.

Mechanism of secondary organic aerosol formation from the reaction of isoprene with sulfoxy radicals

Isoprene can react with sulfoxy radicals (SO₄^•- and SO₃^•-) to form organosulfur compounds in aqueous phase, and the organosulfur compounds are important compositions of secondary organic aerosols (SOAs). To make sure the specific configurations of the products and the role of SO₄^•- and SO₃^•- in the formation of organosulfur compounds, the reaction mechanisms are studied by theoretical calculations. The lowest Gibbs free energy barrier of addition of SO₃^•- onto isoprene is 24.06 kcal mol^-1 at C4 site, and its rate constant is 1.30 × 10^-11 M^-1 s^-1 at 298 K and 1 atm. And the Gibbs free energy barriers of addition of SO₄^•- onto isoprene at C1 and C4 sites are barrierless and 0.92 kcal mol^-1; the rate constants of these two addition processes are 6.85 × 10⁹ and 1.17 × 10⁵ M^-1 s^-1 at 298 K and 1 atm. It elucidates that organosulfates are easier to be formed. As for the products P1 (with alcohol group) and P2 (with aldehyde group), the lowest Gibbs free energy barrier of the formation of P1 is 3.17 kcal mol^-1, and that of the formation of P2 is 15.84 kcal mol^-1, which means that the product with alcohol group is easier to be formed than that with aldehyde group. This work provides a reference for the formation of organosulfur compounds in aqueous phase, and it may help to understand the SOA formation.

Assessment of Isoprene as a Possible Biosignature Gas in Exoplanets with Anoxic Atmospheres

The search for possible biosignature gases in habitable exoplanet atmospheres is accelerating, although actual observations are likely years away. This work adds isoprene, C₅H₈, to the roster of biosignature gases. We found that isoprene geochemical formation is highly thermodynamically disfavored and has no known abiotic false positives. The isoprene production rate on Earth rivals that of methane (CH₄; ∼500 Tg/year). Unlike methane, on Earth isoprene is rapidly destroyed by oxygen-containing radicals. Although isoprene is predominantly produced by deciduous trees, isoprene production is ubiquitous to a diverse array of evolutionary distant organisms, from bacteria to plants and animals-few, if any, volatile secondary metabolites have a larger evolutionary reach. Although non-photochemical sinks of isoprene may exist, such as degradation of isoprene by life or other high deposition rates, destruction of isoprene in an anoxic atmosphere is mainly driven by photochemistry. Motivated by the concept that isoprene might accumulate in anoxic environments, we model the photochemistry and spectroscopic detection of isoprene in habitable temperature, rocky exoplanet anoxic atmospheres with a variety of atmosphere compositions under different host star ultraviolet fluxes. Limited by an assumed 10 ppm instrument noise floor, habitable atmosphere characterization when using James Webb Space Telescope (JWST) is only achievable with a transit signal similar or larger than that for a super-Earth-sized exoplanet transiting an M dwarf star with an H₂-dominated atmosphere. Unfortunately, isoprene cannot accumulate to detectable abundance without entering a run-away phase, which occurs at a very high production rate, ∼100 times the Earth's production rate. In this run-away scenario, isoprene will accumulate to >100 ppm, and its spectral features are detectable with ∼20 JWST transits. One caveat is that some isoprene spectral features are hard to distinguish from those of methane and also from other hydrocarbons containing the isoprene substructure. Despite these challenges, isoprene is worth adding to the menu of potential biosignature gases.

Rapid production of highly oxidized molecules in isoprene aerosol via peroxy and alkoxy radical isomerization pathways in low and high NOx environments: Combined laboratory, computational and field studies

Recently, we identified seven novel hydroxy-carboxylic acids resulting from gas-phase reactions of isoprene in the presence of nitrogen oxides (NO_x), ozone (O₃), and/or hydroxyl radicals (OH). In the present study, we provide evidence that hydroxy-carboxylic acids, namely methyltartaric acids (MTA) are: (1) reliable isoprene tracers, (2) likely produced via rapid peroxy radical hydrogen atom (H) shift reactions (autoxidation mechanism) and analogous alkoxy radical H shifts in low and high NO_x environments respectively and (3) representative of aged ambient aerosol in the low NO_x regime. Firstly, MTA are reliable tracers of isoprene aerosol because they have been identified in numerous chamber experiments involving isoprene conducted under a wide range of conditions and are absent in the oxidation of mono- and sesquiterpenes. They are also present in numerous samples of ambient aerosol collected during the past 20 years at several locations in the U.S. and Europe. Furthermore, MTA concentrations measured during a year-long field study in Research Triangle Park (RTP), NC in 2003 show a seasonal trend consistent with isoprene emissions and photochemical activity. Secondly, an analysis of chemical ionization mass spectrometer (CIMS) data of several chamber experiments in low and high NO_x environments show that highly oxidized molecules (HOMs) derived from isoprene that lead to MTAs may be produced rapidly and considered as early generation isoprene oxidation products in the gas phase. Density functional theory calculations show that rapid intramolecular H shifts involving peroxy and alkoxy radicals possess low barriers for methyl-hydroxy-butenals (MHBs) that may represent precursors for MTA. From these results, a viable rapid H shift mechanism is proposed to occur that produces isoprene derived HOMs like MTA. Finally, an analysis of the mechanism shows that autoxidation-like pathways in low and high NO_x may produce HOMs in a few OH oxidation steps like commonly detected methyl tetrol (MT) isoprene tracers. The ratio of MTA/MT in isoprene aerosol is also shown to be significantly greater in field versus chamber samples indicating the importance of such pathways in the atmosphere even for smaller hydrocarbons like isoprene.

Protein expression plasticity contributes to heat and drought tolerance of date palm

Climate change is increasing the frequency and intensity of warming and drought periods around the globe, currently representing a threat to many plant species. Understanding the resistance and resilience of plants to climate change is, therefore, urgently needed. As date palm (Phoenix dactylifera) evolved adaptation mechanisms to a xeric environment and can tolerate large diurnal and seasonal temperature fluctuations, we studied the protein expression changes in leaves, volatile organic compound emissions, and photosynthesis in response to variable growth temperatures and soil water deprivation. Plants were grown under controlled environmental conditions of simulated Saudi Arabian summer and winter climates challenged with drought stress. We show that date palm is able to counteract the harsh conditions of the Arabian Peninsula by adjusting the abundances of proteins related to the photosynthetic machinery, abiotic stress and secondary metabolism. Under summer climate and water deprivation, these adjustments included efficient protein expression response mediated by heat shock proteins and the antioxidant system to counteract reactive oxygen species formation. Proteins related to secondary metabolism were downregulated, except for the P. dactylifera isoprene synthase (PdIspS), which was strongly upregulated in response to summer climate and drought. This study reports, for the first time, the identification and functional characterization of the gene encoding for PdIspS, allowing future analysis of isoprene functions in date palm under extreme environments. Overall, the current study shows that reprogramming of the leaf protein profiles confers the date palm heat- and drought tolerance. We conclude that the protein plasticity of date palm is an important mechanism of molecular adaptation to environmental fluctuations.

Vapor pressure deficit helps explain biogenic volatile organic compound fluxes from the forest floor and canopy of a temperate deciduous forest

Biogenic volatile organic compounds (BVOCs) play critical roles in ecological and earth-system processes. Ecosystem BVOC models rarely include soil and litter fluxes and their accuracy is often challenged by BVOC dynamics during periods of rapid ecosystem change like spring leaf out. We measured BVOC concentrations within the air space of a mixed deciduous forest and used a hybrid Lagrangian/Eulerian canopy transport model to estimate BVOC flux from the forest floor, canopy, and whole ecosystem during spring. Canopy flux measurements were dominated by a large methanol source and small isoprene source during the leaf-out period, consistent with past measurements of leaf ontogeny and theory, and indicative of a BVOC flux situation rarely used in emissions model testing. The contribution of the forest floor to whole-ecosystem BVOC flux is conditional on the compound of interest and is often non-trivial. We created linear models of forest floor, canopy, and whole-ecosystem flux for each study compound and used information criteria-based model selection to find the simplest model with the best fit. Most published BVOC flux models do not include vapor pressure deficit (VPD), but it entered the best canopy, forest floor, and whole-ecosystem BVOC flux model more than any other study variable in the present study. Since VPD is predicted to increase in the future, future studies should investigate how it contributes to BVOC flux through biophysical mechanisms like evaporative demand, leaf temperature and stomatal function.

Emissions and potential controls of light alkenes from the marginal seas of China

Marine-derived reactive gases constitute a substantial fraction of volatile organic compounds and directly impact atmospheric chemistry and the global climate. Light alkene emissions from marginal seas are limited, and their contribution to atmospheric concentrations is likely underestimated. We surveyed oceanic emissions of ethylene, propylene, and isoprene, as well as their potential controlling factors in the marginal seas of China during the cruises in 2014-2015. Significant temporal-spatial variations in ethylene, propylene, and isoprene concentrations were observed, with the highest occurring in summer near the coastal regions. Isoprene concentrations were primarily controlled by phytoplankton biomass (i.e., Chl-a) in coastal regions, while the elevated concentrations of ethylene and propylene were attributed to photochemical reactions with the high levels of dissolved organic matter (DOM). Additionally, the vertical distributions of ethylene and propylene mirrored light penetration, with exponential decrease in concentrations with depth. However, there were high values of ethylene and propylene observed at deep chlorophyll maximum, suggesting the existence of non-photochemical production pathways, most likely biological origin. Emissions of ethylene, propylene, and isoprene from the marginal seas of China were estimated to be 0.022, 0.024, and 0.011 Tg C yr^-1, respectively, indicating they are important contributors to global non-methane hydrocarbons. Due to the scarcity of alkene emission data for marginal seas, current global emissions have been underestimated to some extent. It is essential to incorporate the contributions from marginal seas to accurately estimate alkene budgets on global scales.

Quantum chemical study of gas-phase reactions of isoprene with OH radicals producing highly oxidised second-generation products

The formation of secondary organic aerosols caused by atmospheric oxidation of isoprene is harmful to human health and the climate; thus, isoprene oxidation is further mandatory to obtain less harmful or harmless highly oxidised products. In this numerical investigation, 2-hydroperoxy-2-methylbut-3-en-1-ol (ISOPOOH) was considered the model compound to investigate the formation of three RO₂ radicals (C₅H₁₁O₄, C₅H₁₁O₆ and C₅H₁₁O₅) and two saturated highly oxidised products (C₅H₁₂O₆ and C₅H₁₀O₆). The complete reaction network and its thermodynamics and kinetics were analysed to obtain the most probable and feasible reaction pathways. Four different levels of theories (HF, B3LYP, M06-2X and ωB97XD with basis set of 6-31+g(d,p)) were employed to explore a global minimum of ISOPOOH. All theories provided approximately close energetics; however, because of the novelty of the functional and parameterisation of the basis set, the ωB97XD functional was selected to examine the reaction mechanism. C₅H₁₂O₆ was formed as the second-generation highly oxidised product during ISOPOOH oxidation.

Occurance, emission and environmental effects of non-methane hydrocarbons in the Yellow Sea and the East China Sea

The spatial distributions, fluxes, and environmental effects of non-methane hydrocarbons (NMHCs) were investigated in the Yellow Sea (YS) and the East China Sea (ECS) in spring. The average concentrations of ethane, propane, i-/n-butane, ethylene, propylene and isoprene in the seawater were 18.1 ± 6.4, 15.4 ± 4.7, 6.8 ± 2.9, 6.4 ± 3.2, 67.1 ± 26.7, 20.5 ± 8.7 and 17.1 ± 11.1 pmol L^-1, respectively. The alkenes in the surface seawater were more abundant than their saturated homologs and NMHCs concentrations (with the exception of isoprene) decreased with carbon number. The spatial variations of isoprene were consistent with the distributions of chlorophyll a (Chl-a) and Chaetoceros, Skeletonema, Nitzschia mainly contributed to the production of isoprene, while the others' distributions might be related to their photochemical production. Observations in atmospheric NMHCs indicated alkanes in the marine atmosphere decreased from inshore to offshore due to influence of the continental emissions, while alkenes were largely derived from the oceanic source. In addition, no apparent diurnal discrepancy of atmospheric NMHCs (except for isoprene) were found between daytime and night. As the main sink of NMHCs in seawater, the average sea-to-air fluxes of ethane, propane, i-/n-butane, ethylene and propylene were 31.70, 29.75, 18.49, 15.89, 239.6, 67.94 and 52.41 nmol m^-2 d^-1, respectively. The average annual emissions of isoprene accounted for 0.1-1.3% of the global ocean emissions, which indicated that the coastal and shelf areas might be significant sources of isoprene. Furthermore, this study represents the first effort to estimate the environmental effects caused by NMHCs over the YS and the ECS and the results demonstrated contributions of alkanes to ozone and secondary organic aerosol (SOA) formation were lower than those of the alkenes and the largest contributor was isoprene.

Study on the isoprene-producing co-culture system of Synechococcus elongates-Escherichia coli through omics analysis

BACKGROUND

The majority of microbial fermentations are currently performed in the batch or fed-batch manner with the high process complexity and huge water consumption. The continuous microbial production can contribute to the green sustainable development of the fermentation industry. The co-culture systems of photo-autotrophic and heterotrophic species can play important roles in establishing the continuous fermentation mode for the bio-based chemicals production.

RESULTS

In the present paper, the co-culture system of Synechococcus elongates-Escherichia coli was established and put into operation stably for isoprene production. Compared with the axenic culture, the fermentation period of time was extended from 100 to 400 h in the co-culture and the isoprene production was increased to eightfold. For in depth understanding this novel system, the differential omics profiles were analyzed. The responses of BL21(DE3) to S. elongatus PCC 7942 were triggered by the oxidative pressure through the Fenton reaction and all these changes were linked with one another at different spatial and temporal scales. The oxidative stress mitigation pathways might contribute to the long-lasting fermentation process. The performance of this co-culture system can be further improved according to the fundamental rules discovered by the omics analysis.

CONCLUSIONS

The isoprene-producing co-culture system of S. elongates-E. coli was established and then analyzed by the omics methods. This study on the co-culture system of the model S. elongates-E. coli is of significance to reveal the common interactions between photo-autotrophic and heterotrophic species without natural symbiotic relation, which could provide the scientific basis for rational design of microbial community.

Emission drivers and variability of ambient isoprene, formaldehyde and acetaldehyde in north-west India during monsoon season

Isoprene, formaldehyde and acetaldehyde are important reactive organic compounds which strongly impact atmospheric oxidation processes and formation of tropospheric ozone. Monsoon meteorology and the topography of Himalayan foothills cause surface emissions to get rapidly transported both horizontally and vertically, thereby influencing atmospheric processes in distant regions. Further in monsoon, Indo-Gangetic Plain is a major rice growing region of the world and daytime hourly ozone can frequently exceed phytotoxic dose of 40 ppb O₃. However, the sources and ambient variability of these compounds which are potent ozone precursors are unknown. Here, we investigate the sources and photochemical processes driving their emission/formation during monsoon season from a sub-urban site at the foothills of the Himalayas. The measurements were performed in July, August and September using a high sensitivity mass spectrometer. Average ambient mixing ratios (±1σ variability) of isoprene, formaldehyde, acetaldehyde, and the sum of methyl vinyl ketone and methacrolein (MVK+MACR), were 1.4 ± 0.3 ppb, 5.7 ± 0.9 ppb, 4.5 ± 2.0 ppb, 0.75 ± 0.3 ppb, respectively, and much higher than summertime values in May. For isoprene these values were comparable to mixing ratios observed over tropical forests. Surprisingly, despite occurrence of anthropogenic emissions, biogenic emissions were found to be the major source of isoprene with peak daytime isoprene driven by temperature (r ≥ 0.8) and solar radiation. Photo-oxidation of precursor hydrocarbons were the main sources of acetaldehyde, formaldehyde and MVK+MACR. Ambient mixing ratios of all the compounds correlated poorly with acetonitrile (r ≤ 0.2), a chemical tracer for biomass burning suggesting negligible influence of biomass burning during monsoon season. Our results suggest that during monsoon season when radiation and rain are no longer limiting factors and convective activity causes surface emissions to be transported to upper atmosphere, biogenic emissions can significantly impact the remote upper atmosphere, climate and ozone affecting rice yields.

Emissions and atmospheric concentrations of α-pinene at an urban site of India: Role of changes in meteorology

The measurements of a monoterpene (α-pinene) were performed by the PTR-TOF-MS instrument at an urban site of India from mid-January to March 2014. The daytime concentration increased from 0.15 ppb in the second-half of January to 0.40 ppb in the second-half of March. Both the nighttime and daytime ratios of α-pinene/benzene in the second-half of March were 2-3 times higher their respective values from mid-January to first-half of February. The ratios of α-pinene/benzene increased from ∼0.27 ppb ppb^-1 at lower temperatures to ∼0.51 ppb ppb^-1 at higher temperatures indicating the increase of biogenic emissions in March. The concentration of α-pinene exhibited exponential decline with wind speed, but the rate of decrease in February was about twice that for March. The nighttime ratios of α-pinene/isoprene were greater than those measured in the daytime, suggesting temperature-dependent biogenic emissions of α-pinene. From mid-January to March, the increase of ∼53% in the biogenic contributions of α-pinene were associated with the change in meteorological conditions. Our analysis suggests that the combined effect of the northwest wind flow and higher air temperatures in March favored the emissions of BVOCs from local vegetation. The exceptionally high concentrations of α-pinene up to 6 ppb were measured during the Holi bonfire festival. This is the first study reporting the change in α-pinene during winter-summer transition over India. In the urban regions of developing countries, high emissions of BVOCs from vegetation and of NOx from anthropogenic sources can act as a source of ozone.

Reviews of emission of biogenic volatile organic compounds (BVOCs) in Asia

Biogenic volatile organic compounds (BVOCs) in the atmosphere play important roles in the formation of ground-level ozone and secondary organic aerosol (SOA) in global scale and also in regional scale under some condition due to their large amount and relatively higher reactivity. In places with high plant cover in the tropics and in China where air pollution is serious, the effect of BVOCs on ozone and secondary organic aerosols is strong. The present research aims to provide a comprehensive review about the emission rate, emission inventory, research methods, the influencing factors of BVOCs emissions, as well as their impacts on atmospheric environment quality and human health in recent years in Asia based on the summary and analysis of literatures. It is suggested to use field direct measurement method to obtain the emission rate and model method to calculate the emission amount. Several recommendations are given for future investigation and policy development on BVOCs emission.

Vertical profiles of biogenic volatile organic compounds as observed online at a tower in Beijing

Vertical profiles of isoprene and monoterpenes were measured by a proton transfer reaction-time of flight-mass spectrometry (PTR-ToF-MS) at heights of 3, 15, 32, 64, and 102 m above the ground on the Institute of Atmospheric Physics (IAP) tower in central Beijing during the winter of 2016 and the summer of 2017. Isoprene mixing ratios were larger in summer due to much stronger local emissions whereas monoterpenes were lower in summer due largely to their consumption by much higher levels of ozone. Isoprene mixing ratios were the highest at the 32 m in summer (1.64 ± 0.66 ppbV) and at 15 m in winter (1.41 ± 0.64 ppbV) with decreasing concentrations to the ground and to the 102 m, indicating emission from the tree canopy of the surrounding parks. Monoterpene mixing ratios were the highest at the 3 m height in both the winter (0.71 ± 0.42 ppbV) and summer (0.16 ± 0.10 ppbV) with a gradual decreasing trend to 102 m, indicting an emission from near the ground level. The lowest isoprene and monoterpene mixing ratios all occurred at 102 m, which were 0.71 ± 0.42 ppbV (winter) and 1.35 ± 0.51 ppbV (summer) for isoprene, and 0.42 ± 0.22 ppbV (winter) and 0.07 ± 0.06 ppbV (summer) for monoterpenes. Isoprene in the summer and monoterpenes in the winter, as observed at the five heights, showed significant mutual correlations. In the winter monoterpenes were positively correlated with combustion tracers CO and acetonitrile at 3 m, suggesting possible anthropogenic sources.