Integrating transcriptomics into triad-based soil-quality assessment

The present study examined how transcriptomics tools can be included in a triad-based soil-quality assessment to assess the toxicity of soils from riverbanks polluted by metals. To that end, the authors measured chemical soil properties and used the International Organization for Standardization guideline for ecotoxicological tests and a newly developed microarray for gene expression in the indicator soil arthropod Folsomia candida. Microarray analysis revealed that the oxidative stress response pathway was significantly affected in all soils except one. The data indicate that changes in cell redox homeostasis are a significant signature of metal stress. Finally, 32 genes showed significant dose-dependent expression with metal concentrations. They are promising genetic markers providing an early indication of the need for higher-tier testing of soil quality. During the bioassay, the toxicity of the least polluted soils could be removed by sterilization. The gene expression profile for this soil did not show a metal-related signature, confirming that a factor other than metals (most likely of biological origin) caused the toxicity. The present study demonstrates the feasibility and advantages of integrating transcriptomics into triad-based soil-quality assessment. Combining molecular and organismal life-history trait stress responses helps to identify causes of adverse effects in bioassays. Further validation is needed for verifying the set of genes with dose-dependent expression patterns linked with toxic stress.

Assessing the influence of compost and biochar amendments on the mobility and toxicity of metals and arsenic in a naturally contaminated mine soil

Amending contaminated soils with organic wastes can influence trace element mobility and toxicity. Soluble concentrations of metals and arsenic were measured in pore water and aqueous soil extracts following the amendment of a heavily contaminated mine soil with compost and biochar (10% v:v) in a pot experiment. Speciation modelling and toxicity assays (Vibrio fischeri luminescence inhibition and Lolium perenne germination) were performed to discriminate mechanisms controlling metal mobility and assess toxicity risk thereafter. Biochar reduced free metal concentrations furthest but dissolved organic carbon primarily controlled metal mobility after compost amendment. Individually, both amendments induced considerable solubilisation of arsenic to pore water (>2500 μg l(-1)) related to pH and soluble phosphate but combining amendments most effectively reduced toxicity due to simultaneous reductions in extractable metals and increases in soluble nutrients (P). Thus the measure-monitor-model approach taken determined that combining the amendments was most effective at mitigating attendant toxicity risk.

Growth, nutrient status, and photosynthetic response to diesel-contaminated soil of a cordgrass, Spartina argentinensis

The present study was conduced to investigate the tolerance limits of Spartina argentinensis, which occurs in inland marshes of the Chaco-Pampean regions of Argentina, to diesel-contaminated soil. A glasshouse experiment was designed to investigate the effect of diesel fuel from 0% to 3% on growth and photosynthetic apparatus of S. densiflora by measuring gas exchange and photosynthetic pigments. We also performed chemical analysis of plant samples, and determined mycorrhizal index. Tiller and root biomasses declined with increasing diesel fuel concentration, as well as photosynthetic rate (A). Reductions in A could be accounted for by non-stomatal limitations. Mycorrhizal roots of S. argentinensis were reduced by the presence of diesel fuel, but did not affect its nutritional status; in fact, most element concentrations increased with diesel contamination. Despite the negative effect of diesel-contaminated soil, S. argentinensis continued growing, which could be useful management options for phytorremediation of diesel-contaminated soils.

Field study on the accumulation of trace elements by vegetables produced in the vicinity of abandoned pyrite mines

To evaluate the accumulation of trace elements (TE) by vegetables produced in the vicinity of abandoned pyrite mines, eighteen different small farms were selected near three mines from the Portuguese sector of the Iberian Pyrite Belt (São Domingos, Aljustrel and Lousal). Total and bioavailable As, Cu, Pb, and Zn concentrations were analyzed in the soils, and the same TE were analyzed in three different vegetables, lettuce (Lactuca sativa), coriander (Coriandrum sativum), and cabbage (Brassica oleracea), collected at the same locations. The soils were contaminated with As, Cu, Pb, and Zn, since their total concentrations exceeded the considered soil quality guideline values for plant production in the majority of the sampling sites. The maximum total concentrations for those TE were extremely high in some of the sampling sites (e.g. 1,851 mg As kg(-1) in São Domingos, 1,126 mg Cu kg(-1) in Aljustrel, 4,946 mg Pb kg(-1) in São Domingos, and 1,224 mg Zn kg(-1) in Aljustrel). However, the soils were mainly circumneutral, a factor that contributes to their low bioavailable fractions. As a result, generally, the plants contained levels of these elements characteristic of uncontaminated plants, and accumulation factors for all elements <1, typical of excluder plants. Furthermore, the estimated daily intake (EDI) for Cu and Zn, through the consumption of these vegetables, falls below the recommended upper limit for daily intake of these elements. The sampling site that stood out from the others was located at São João de Negrilhos (Aljustrel), where bioavailable Zn levels were higher, a consequence of the slight acidity of the soil. Therefore, the Zn content in vegetables was also higher, characteristic of contaminated plants, emphasizing the risk of Zn entering the human food chain via the consumption of crops produced on those soils.

Risk assessment of an abandoned pyrite mine in Spain based on direct toxicity assays

This research reports the risk assessment of an abandoned pyrite mine using direct toxicity assays of soil and groundwater samples taken at the site. The toxicity of As and heavy metals from mining soils to soil and aquatic organisms was studied using the Multispecies Soil System (MS-3) in soil columns. Ecotoxicological assessment was performed with soil samples diluted with a control soil at concentrations of 12.5, 25, 50 and 100% test soil/soil (w/w). In this way, changes in the mobility and bioavailability of soil contaminants due to changes in geochemical soil properties via soil dilution were studied. The toxicity of water samples was tested on algae and Daphnia magna. The assessment of the mining area indicated that the current presence of As and heavy metals at the site may cause injuries to soil and aquatic organisms in the entire research area. Moreover, this investigation demonstrated that changes in geochemical conditions can increase the availability of arsenic and, consequently, the environmental risk of these soils. A good correlation was not found between toxicity parameters and the concentrations of soil contaminants based on total and extracted element concentrations. This finding reinforces the usefulness of direct toxicity assays for evaluating environmental risk.

Risk assessment of an abandoned pyrite mine in Spain based on direct toxicity assays

This research reports the risk assessment of an abandoned pyrite mine using direct toxicity assays of soil and groundwater samples taken at the site. The toxicity of As and heavy metals from mining soils to soil and aquatic organisms was studied using the Multispecies Soil System (MS-3) in soil columns. Ecotoxicological assessment was performed with soil samples diluted with a control soil at concentrations of 12.5, 25, 50 and 100% test soil/soil (w/w). In this way, changes in the mobility and bioavailability of soil contaminants due to changes in geochemical soil properties via soil dilution were studied. The toxicity of water samples was tested on algae and Daphnia magna. The assessment of the mining area indicated that the current presence of As and heavy metals at the site may cause injuries to soil and aquatic organisms in the entire research area. Moreover, this investigation demonstrated that changes in geochemical conditions can increase the availability of arsenic and, consequently, the environmental risk of these soils. A good correlation was not found between toxicity parameters and the concentrations of soil contaminants based on total and extracted element concentrations. This finding reinforces the usefulness of direct toxicity assays for evaluating environmental risk.

Arsenic accumulation by edible aquatic macrophytes

Edible aquatic macrophytes grown in arsenic (As)-contaminated soil and sediment were investigated to determine the extent of As accumulation and potential risk to humans when consumed. Nasturtium officinale (watercress) and Diplazium esculentum (warabi) are two aquatic macrophytes grown and consumed in Hawaii. Neither has been assessed for potential to accumulate As when grown in As-contaminated soil. Some former sugarcane plantation soils in eastern Hawaii have been shown to have concentrations of total As over 500 mg kg(-1). It was hypothesized that both species will accumulate more As in contaminated soils than in non-contaminated soils. N. officinale and D. esculentum were collected in areas with and without As-contaminated soil and sediment. High soil As concentrations averaged 356 mg kg(-1), while low soil As concentrations were 0.75 mg kg(-1). Average N. officinale and D. esculentum total As concentrations were 0.572 mg kg(-1) and 0.075 mg kg(-1), respectively, corresponding to hazard indices of 0.12 and 0.03 for adults. Unlike previous studies where watercress was grown in As-contaminated water, N. officinale did not show properties of a hyperaccumulator, yet plant concentrations in high As areas were more than double those in low As areas. There was a slight correlation between high total As in sediment and soil and total As concentrations in watercress leaves and stems, resulting in a plant uptake factor of 0.010, an order of magnitude higher than previous studies. D. esculentum did not show signs of accumulating As in the edible fiddleheads. Hawaii is unique in having volcanic ash soils with extremely high sorption characteristics of As and P that limit release into groundwater. This study presents a case where soils and sediments were significantly enriched in total As concentration, but the water As concentration was below detection limits.

Comparison of risk-based decision-support systems for brownfield site rehabilitation: DESYRE and SADA applied to a Romanian case study

Brownfield rehabilitation is an essential step for sustainable land-use planning and management in the European Union. In brownfield regeneration processes, the legacy contamination plays a significant role, firstly because of the persistent contaminants in soil or groundwater which extends the existing hazards and risks well into the future; and secondly, problems from historical contamination are often more difficult to manage than contamination caused by new activities. Due to the complexity associated with the management of brownfield site rehabilitation, Decision Support Systems (DSSs) have been developed to support problem holders and stakeholders in the decision-making process encompassing all phases of the rehabilitation. This paper presents a comparative study between two DSSs, namely SADA (Spatial Analysis and Decision Assistance) and DESYRE (Decision Support System for the Requalification of Contaminated Sites), with the main objective of showing the benefits of using DSSs to introduce and process data and then to disseminate results to different stakeholders involved in the decision-making process. For this purpose, a former car manufacturing plant located in the Brasov area, Central Romania, contaminated chiefly by heavy metals and total petroleum hydrocarbons, has been selected as a case study to apply the two examined DSSs. Major results presented here concern the analysis of the functionalities of the two DSSs in order to identify similarities, differences and complementarities and, thus, to provide an indication of the most suitable integration options.

Neural network and Monte Carlo simulation approach to investigate variability of copper concentration in phytoremediated contaminated soils

The statistical variation of soil properties and their stochastic combinations may affect the extent of soil contamination by metals. This paper describes a method for the stochastic analysis of the effects of the variation in some selected soil factors (pH, DOC and EC) on the concentration of copper in dwarf bean leaves (phytoavailability) grown in the laboratory on contaminated soils treated with different amendments. The method is based on a hybrid modeling technique that combines an artificial neural network (ANN) and Monte Carlo Simulations (MCS). Because the repeated analyses required by MCS are time-consuming, the ANN is employed to predict the copper concentration in dwarf bean leaves in response to stochastic (random) combinations of soil inputs. The input data for the ANN are a set of selected soil parameters generated randomly according to a Gaussian distribution to represent the parameter variabilities. The output is the copper concentration in bean leaves. The results obtained by the stochastic (hybrid) ANN-MCS method show that the proposed approach may be applied (i) to perform a sensitivity analysis of soil factors in order to quantify the most important soil parameters including soil properties and amendments on a given metal concentration, (ii) to contribute toward the development of decision-making processes at a large field scale such as the delineation of contaminated sites.

Field and laboratory assessments on dissolution and fractionation of Pb from spent and unspent shots in the rhizosphere soil

The objective of this study was to determine the effect of plant root growth on Pb dissolution from shot under laboratory and field-scale conditions. For a laboratory study, a 100-d incubation experiment was conducted to assess Pb dissolution from unspent shot (new) and spent shot (>10yr in fields) in rhizosphere and non-rhizosphere (bulk) soils using the Toxicity Characteristic Leaching Procedure (TCLP) and sequential extraction methods. This study found that increasing the soil pH value to 7.5 by liming significantly reduced Pb dissolution from unspent and spent shot (<5mgL(-1)). Dissolution of Pb from shot was induced more in rhizosphere than bulk soils. Regardless of shot types, the averaged TCLP-Pb concentration in acidic and limed soils was 12.9- and 8.1-fold greater in rhizosphere than in bulk soils, respectively. For a field-scale investigation, a total of 31 individual plant samples of 6 different species and their rhizosphere soils were collected from a clay-target shooting range (<35000mgPbkg(-1)). The Pb concentration in plant aboveground tissues depended on species with a mean value of 72mgkg(-1) (15-254mgkg(-1)), which was far smaller than that reported in previous studies. Regardless of high soil Pb levels, aboveground tissue Pb concentrations of Solidago altissima (i.e., Canada goldenrod, 15mgkg(-1)) and Andropogon virginicus (i.e., broomsedge, 18mgkg(-1)) were below the toxicity threshold, suggesting that these indigenous species could have phytostabilization potentials. The limited Pb accumulation by vegetation was attributed to the abundance of soil calcite derived from spent clay-target fragments.

Possibilities of implementation of bioavailability methods for organic contaminants in the Dutch Soil Quality Assessment Framework

In the Netherlands, risk assessment of contaminated soils is based on determining the total contaminant concentration. If this measured soil concentration exceeds the Soil Quality Standards (SQS) a higher tier risk evaluation must be performed. Experiences from the field have given rise to the perception that performing risk evaluations based on (measured) total concentrations may lead to an inaccurate assessment of the actual risks. Assuming that only the bioavailable fraction is capable of exerting adverse effects in the soil ecosystem, it is suggested, that by taking bioavailability into account in a (higher tier) risk evaluation, a more effect-based risk assessment can be performed. Bioavailability has been a subject of research for several decades. However up to now bioavailability has not been implemented in the Dutch Soil Quality Assessment Framework. First actions were taken in the Netherlands to determine whether the concept of bioavailability could be implemented in the risk assessment of contaminated soils and to find out how bioavailability can become part of the Dutch Soil Quality Assessment Framework. These actions have led to a concrete proposal for implementation of bioavailability methods in the risk assessment of organic contaminants in soils. This paper focuses on the chemical prediction of bioavailability for ecological risk assessment of contaminated soils.

The effect of different log P algorithms on the modeling of the soil sorption coefficient of nonionic pesticides

Collecting data on the effects of pesticides on the environment is a slow and costly process. Therefore, significant efforts have been focused on the development of models that predict physical, chemical or biological properties of environmental interest. The soil sorption coefficient normalized to the organic carbon content (Koc) is a key parameter that is used in environmental risk assessments. Thus, several log Koc prediction models that use the hydrophobic parameter log P as a descriptor have been reported in the literature. Often, algorithms are used to calculate the value of log P due to the lack of experimental values for this property. Despite the availability of various algorithms, previous studies fail to describe the procedure used to select the appropriate algorithm. In this study, models that correlate log Koc with log P were developed for a heterogeneous group of nonionic pesticides using different freeware algorithms. The statistical qualities and predictive power of all of the models were evaluated. Thus, this study was conducted to assess the effect of the log P algorithm choice on log Koc modeling. The results clearly demonstrate that the lack of a selection criterion may result in inappropriate prediction models. Seven algorithms were tested, of which only two (ALOGPS and KOWWIN) produced good results. A sensible choice may result in simple models with statistical qualities and predictive power values that are comparable to those of more complex models. Therefore, the selection of the appropriate log P algorithm for modeling log Koc cannot be arbitrary but must be based on the chemical structure of compounds and the characteristics of the available algorithms.

A comparison of fractal methods and probability plots in identifying and mapping soil metal contamination near an active mining area, Iran

Mining activities may contribute significant amounts of metals to surrounding soils. Assessing the potential effects and extent of metal contamination requires the differentiation between geogenic and additional anthropogenic sources. This study compares the use of conventional probability plots with two forms of fractal analysis (number-size and concentration-area) to separate geochemical populations of ore-related elements in agricultural area soils adjacent to Pb-Zn mining operations in the Irankuh Mountains, central Iran. The two general approaches deliver similar spatial groupings of univariate geochemical populations, but the fractal methods provide more distinct separation between populations and require less data manipulation and modeling than the probability plots. The concentration-area fractal approach was more effective than the number-size fractal and probability plotting methods at separating sub-populations within the samples affected by contamination from the mining operations. There is a general lack of association between major elements and ore-related metals in the soils. The background populations display higher relative variation in the major elements than the ore-related metals whereas near the mining operations there is far greater relative variation in the ore-related metals. The extent of the transport of contaminants away from the mine site is partly a function of the greater dispersion of Zn compared with Pb and As, however, the patterns indicate dispersion of contaminants from the mine site is via dust and not surface/groundwater. A combination of geochemical and graphical assessment, with different methods of threshold determination, is shown to be effective in separating geogenic and anthropogenic geochemical patterns.

Destruction of decabromodiphenyl ether (BDE-209) in a ternary carbonate molten salt reactor

Soil contamination by PBDEs has become a significant environmental concern and requires appropriate remediation technologies. In this study, the destruction of decabromodiphenyl ether (BDE-209) in a ternary molten salt (Li, Na, K)2 CO3 reactor was evaluated. The effects of reaction temperature, additive amount of BDE-209 and salt mixture, on off-gas species, were investigated. The salt mixture after reaction was characterized by XRD analysis and a reaction pathway proposed. The results showed that the amounts of C2H6, C2H4, C4H8 and CH4 in the off-gas decreased with increases in temperature, while the CO2 level increased. When the reaction temperature reached 750 °C, incomplete combustion products (PICs) were no longer detected. Increasing BDE-209 loading was not helpful for the reaction, as more PICs were produced. Larger amounts of salt mixture were helpful for the reaction and PICs were not observed with the mole ratio 1: 2000 of BDE-209 to carbonate melt. XRD analysis confirmed the capture of bromine in BDE-209 by the molten salt.

Soil contamination by phthalate esters in Chinese intensive vegetable production systems with different modes of use of plastic film

The concentrations of six priority phthalic acid esters (PAEs) in intensively managed suburban vegetable soils in Nanjing, east China, were analyzed using gas chromatography-mass spectrometry (GC-MS). The total PAE concentrations in the soils ranged widely from 0.15 to 9.68 mg kg(-1) with a median value of 1.70 mg kg(-1), and di-n-butyl phthalate (DnBP), bis-(2-ethylhexyl) phthalate (DEHP) and di-n-octyl phthalate (DnOP) were the most abundant phthalate esters. Soil PAE concentrations depended on the mode of use of plastic film in which PAEs were incorporated as plasticizing agents and both the plastic film and poultry manure appeared to be important sources of soil PAEs. Vegetables in rotation with flooded rice led to lower concentrations of PAEs in soil. The results indicate that agricultural plastic film can be an important source of soil PAE contamination and further research is required to fully elucidate the mechanisms of PAE contamination of intensive agricultural soils with different use modes of use of plastic film.

Historical arsenic contamination of soil due to long-term phosphate fertiliser applications

Archived samples from the Park Grass Experiment, established in 1856, were analysed to determine the impacts of long-term phosphate fertiliser applications on arsenic concentrations in soil and herbage. In plots receiving 35 kg P ha(-1) annually (+P), topsoil As concentrations almost doubled from an initial value of ∼10 mg kg(-1) during 1888-1947 and remained stable thereafter. The phosphate fertilisers used before 1948 contained 401-1575 mg As kg(-1), compared to 1.6-20.3 mg As kg(-1) in the later samples. Herbage samples from the +P plots collected during 1888-1947 contained significantly more As than those from the -P plots, but later samples did not differ significantly. Mass-balance calculations show that the increase in soil As can be explained by the As input from P fertiliser applications before 1948. The results demonstrate that the P fertilisers used on the Park Grass Experiment before 1948 caused substantial As contamination of the soil.

Detection of Toxocara eggs in contaminated soil from various public places of Chennai city and detailed correlation with literature

Toxocarosis is one of the most prevalent human helminthosis caused by larvae of Toxocara canis and Toxocara cati, the most widely distributed nematode parasites of dogs and cats respectively. Soil is considered as the principal source of transmission of Toxocara infection to human beings. With increasing population of dogs and cats, soil contamination with ova or eggs of Toxocara can be detected in public and private locations of city backyards, playgrounds, streets, sand pits and so on, regardless of the season of the year. In this context the present study was carried out to estimate the extent of soil contamination with Toxocara eggs in public parks, playgrounds and few kennels situated in different parts of Chennai city. A total of 105 soil samples from 40 public places and 5 kennels were screened for the presence of parasitic eggs. Toxocara eggs were recovered from 5 soil samples indicating an overall prevalence rate of 4.75 %. Out of 80 samples collected from public places, three samples, one each from Mogappair, My lady park (Periamet) and Madras Veterinary College showed the presence of Toxocara spp. eggs indicating an overall prevalence of 3.75 per cent. Out of the 25 samples from 5 kennels, two samples one each from Tambaram and Thorappakkam kennels were positive for Toxocara eggs with prevalence of 8 per cent. Low prevalence of Toxocara eggs in soil samples of these areas can be attributed to the less population of pups, the carriers of adult worms and the active source of soil contamination. The progress made in ABC (animal birth control) programme carried out by both governmental and non-governmental organizations has contributed to reduction of birth rate in dogs and thereby reduced the chances of soil contamination with Toxocara eggs to a certain extent in Chennai city.

Prevalence of Toxocara Spp. eggs in Public Parks in Tehran City, Iran

BACKGROUND

The objective of the present research was to determine the frequency of Toxocara spp. eggs in soil samples of public parks, in the city of Tehran, Iran.

METHODS

A total of 600 soil samples were taken from 120 parks between Aprils to November, 2008. Soil samples were collected from 5 distinct sites in the parks. The samples were washed with saline solution and the collected sediment from each park were equally divided and examined by floatation and Petri dish methods for Toxocara eggs.

RESULTS

Ten percent were contaminated with Toxocara spp. eggs. The number of observed Toxocara eggs in each microscopic field was varied from 1-3. No significant differences were observed between floatation and Petri dish methods.

CONCLUSION

Our public parks showed a high risk of toxocariasis and the need for preventive studies.