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Zhang L, Zhou QM, Xu L, Xie X, Wang PX, Xie ZH, Li JL, Tu ZC. Extraction optimization and identification of four advanced glycation-end products inhibitors from lotus leaves and interaction mechanism analysis. Food Chem 2023; 414:135712. [PMID: 36808023 DOI: 10.1016/j.foodchem.2023.135712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Revised: 01/15/2023] [Accepted: 02/13/2023] [Indexed: 02/17/2023]
Abstract
Previous research indicated lotus leaves extract could effectively inhibit advanced glycation end-products (AGEs) formation, but the optimal extraction condition, bio-active compounds and interaction mechanism remain unclear. The current study was designed to optimize the extraction parameters of AGEs inhibitors from lotus leaves by bio-activity-guided approach. The bio-active compounds were enriched and identified, the interaction mechanisms of inhibitors with ovalbumin (OVA) were investigated by fluorescence spectroscopy and molecular docking. The optimum extraction parameters were solid-liquid ratio of 1:30, ethanol concentration of 70 %, ultrasonic time of 40 min, temperature of 50 °C, and power of 400 W. Isoquercitrin, hyperoside, astragalin, and trifolin were identified from the 80 % ethanol fraction of lotus leaves (80HY). Hyperoside and isoquercitrin were dominant AGEs inhibitors and accounted for 55.97 % of 80HY. Isoquercitrin, hyperoside, trifolin interacted with OVA via the same mechanism, hyperoside exhibited the strongest affinity, trifolin caused the most conformational changes.
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Jiang SL, Hu L, Hu ZY, Wang WJ, Shi JH. Exploring the binding characteristics of bovine serum albumin with tyrosine kinase inhibitor entrectinib: Multi-spectral analysis and theoretical calculation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 295:122555. [PMID: 36921521 DOI: 10.1016/j.saa.2023.122555] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 02/23/2023] [Indexed: 06/18/2023]
Abstract
Entrectinib (ENB) is one of multi-target tyrosine kinase inhibitors, which is mainly used for treating neurotrophic tyrosine receptor kinase gene fusion positive solid tumors. The binding characteristics of ENB and bovine serum albumin (BSA) were studied by experiments and theoretical calculations. The steady-state fluorescence showed that ENB quenched the fluorescence of BSA through mixed quenching, and ENB was dominated by static quenching at low concentration. ENB and BSA had a moderate affinity, formed a complex with a stoichiometric ratio of 1:1 and the binding constant of about 105 M-1 at 298 K, and Förster non-radiative energy transfer occurs. According to the driving force competition experiment, thermodynamic parameter analysis and theoretical calculation, hydrogen bond, van der Waals force and hydrophobic force were the main factors affecting the stability of the ENB-BSA complex. Molecular docking and site markers competition showed that ENB spontaneously bound to the Site III of BSA so that ENB could make the skeleton of BSA loose, the spatial structure of BSA changed (α-helix decreased by 3.1%, random coil increased by 1.7%), and the microenvironment of Tyr and Trp residues changed. The existence of Co2+ metal ions can enhance the binding effect, thus prolonging the half-life of ENB in vivo, which may improve the efficacy of ENB, while Ca2+, Cu2+ and Mg2+ metal ions will reduce the efficacy of ENB.
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Wang Y, Yang C, Zhang J, Zhang L. Interaction of preheated whey protein isolate with rose anthocyanin extracts in beverage model system: Influence on color stability, astringency and mechanism. Food Chem 2023; 412:135507. [PMID: 36716623 DOI: 10.1016/j.foodchem.2023.135507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 01/09/2023] [Accepted: 01/15/2023] [Indexed: 01/20/2023]
Abstract
Preheating proteins have the potential to improve anthocyanin stability. Our aim was to investigate the effect of preheated whey protein isolate (WPI) on the color stability and astringency of the beverage model system in the presence of rose anthocyanin extracts (RAEs), and to explore the mechanism of interaction between preheated WPI and RAEs. The secondary structure, particle size and transparency of WPI were obviously changed by preheating. WPI preheated at 100°C (WPI100) could effectively improve the color stability of RAEs in the beverage model system. Importantly, the WPI100-RAEs in the beverage model system exhibited the smallest particle size and the weakest astringency effect. In addition, different preheated WPIs could interact with RAEs non-covalently, and the interaction forces are hydrogen bonding and van der Waals forces, among which WPI100 had the strongest binding ability to RAEs. These results will provide a new insight into the development of protein-anthocyanin beverages.
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Jiang SL, Hu ZY, Wang WJ, Hu L, Li L, Kou SB, Shi JH. Investigation on the binding behavior of human α1-acid glycoprotein with Janus Kinase inhibitor baricitinib: Multi-spectroscopic and molecular simulation methodologies. Int J Biol Macromol 2023:125096. [PMID: 37285878 DOI: 10.1016/j.ijbiomac.2023.125096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Revised: 05/22/2023] [Accepted: 05/23/2023] [Indexed: 06/09/2023]
Abstract
Baricitinib is a Janus Kinase (JAK) inhibitor that is primarily used to treat moderately to severely active rheumatoid arthritis in adults and has recently been reported for the treatment of patients with severe COVID-19. This paper describes the investigation of the binding behavior of baricitinib to human α1-acid glycoprotein (HAG) employing a variety of spectroscopic techniques, molecular docking and dynamics simulations. Baricitinib can quench the fluorescence from amino acids in HAG through a mix of dynamic and static quenching, according to steady-state fluorescence and UV spectra observations, but it is mainly static quenching at low concentration. The binding constant (Kb) of baricitinib to HAG at 298 K was at the level of 104 M-1, indicating a moderate affinity of baricitinib to HAG. Hydrogen bonding and hydrophobic interactions conducted the main effect, according to thermodynamic characteristics, competition studies between ANS and sucrose, and molecular dynamics simulations. For the change in HAG conformation, the results of multiple spectra showed that baricitinib was able to alter the secondary structure of HAG as well as increase the polarity of the microenvironment around the Trp amino acid. Furthermore, the binding behavior of baricitinib to HAG was investigated by molecular docking and molecular dynamics simulations, which validated experimental results. Also explored is the influence of K+, Co2+, Ni2+, Ca2+, Fe3+, Zn2+, Mg2+ and Cu2+plasma on binding affinity.
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Hu S, Xu M, Cui Z, Xiao Y, Liu C, Liu R, Li X. Study on the binding of polystyrene microplastics with superoxide dismutase at the molecular level by multi-spectroscopy methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 294:122511. [PMID: 36854229 DOI: 10.1016/j.saa.2023.122511] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 01/30/2023] [Accepted: 02/14/2023] [Indexed: 06/18/2023]
Abstract
Microplastics are harmful pollutants that widely exist worldwide and pose a severe threat to all types of organisms. The effects of polystyrene microplastics (PS-MPs) on organisms have been extensively studied, but the interaction mechanism between PS-MPs and superoxide dismutase (SOD) at the molecular level has not been reported yet. Therefore, based on multiple spectroscopic methods and enzyme activity measurements, the molecular mechanism of the interaction between PS-MPs and SOD was investigated. The multispectral results showed that the protein skeleton and secondary structure of SOD were altered by PS-MPs, resulting in decreased α-helix and β-sheet content. After PS-MPs exposure, fluorescence sensitization occurred, and micelles were formed, along with the enhanced hydrophobicity of aromatic amino acids in SOD. Moreover, the resonance light scattering (RLS) spectra result suggested that the PS-MPs and SOD combined to form a larger complex. Eventually, the activity of SOD was increased due to these structural changes, and the concentration of PS-MPs is positively correlated with SOD activity. This study can provide experimental support for studying the toxicological effects of PS-MPs.
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Wang H, Lv R, Gao S, Wang Y, Hao N, An Y, Li Y, Ji Y, Cao M. Investigation of the interaction between the functionalized mesoporous silica nanocarriers and bovine serum albumin via multi-spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 293:122421. [PMID: 36801729 DOI: 10.1016/j.saa.2023.122421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 01/09/2023] [Accepted: 01/26/2023] [Indexed: 06/18/2023]
Abstract
It is well known that the physicochemical properties of nanocarriers, which are closely related to the surface modification of nanoparticles, have crucial impacts on their biological effects. Herein, the interaction between functionalized degradable dendritic mesoporous silica nanoparticles (DDMSNs) and bovine serum albumin (BSA) was investigated for probing into the nanocarriers' potential toxicity using multi-spectroscopy such as ultraviolet/visible (UV/Vis), synchronous fluorescence, Raman and circular dichroism (CD) spectroscopy. BSA, owing to its structural homology and high sequence similarity with HSA, was employed as the model protein to study the interactions with DDMSNs, amino-modified DDMSNs (DDMSNs-NH2) and hyaluronic acid (HA) coated nanoparticles (DDMSNs-NH2-HA). It was found that the static quenching behavior of DDMSNs-NH2-HA to BSA was accompanied by an endothermic and hydrophobic force-driven thermodynamic process, which was confirmed by fluorescence quenching spectroscopic studies and thermodynamic analysis. Furthermore, the conformational variations of BSA upon interaction with nanocarriers were observed by combination of UV/Vis, synchronous fluorescence, Raman and CD spectroscopy. The microstructure of amino residues in BSA changed due to the existence of nanoparticles, for example, the amino residues and hydrophobic groups exposed to microenvironment and the alpha helix (α-helix) content of BSA decreased. Specially, through thermodynamic analysis, the diverse binding modes and driving forces between nanoparticles and BSA were discovered because of different surface modifications on DDMSNs, DDMSNs-NH2 and DDMSNs-NH2-HA. We believe that this work can promote the interpretation of mutual impact between nanoparticles and biomolecules, which will be in favor of predicting the biological toxicity of nano-DDS and engineering functionalized nanocarriers.
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Chen Y, Tang H, Cheng Y, Huang T, Xing B. Interaction between microplastics and humic acid and its effect on their properties as revealed by molecular dynamics simulations. JOURNAL OF HAZARDOUS MATERIALS 2023; 455:131636. [PMID: 37196445 DOI: 10.1016/j.jhazmat.2023.131636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 05/11/2023] [Accepted: 05/12/2023] [Indexed: 05/19/2023]
Abstract
The characteristics and fates of microplastics (MPs) and humic acid (HA) in the environment are significantly influenced by their interactions. Thus, the influence of the MP-HA interaction on their dynamic characteristics was explored. Upon MP-HA interaction, the number of hydrogen bonds established in the HA domains decreased significantly, and the water molecules bridging the hydrogen bonds shifted to the exterior regions of the MP-HA aggregates. The distribution intensity of Ca2+ located at ∼0.21 nm around HA deceased, indicating that the coordination of Ca2+ with the carboxyl on HA was impaired in the presence of MPs. Additionally, the Ca2+-HA electrostatic interaction was suppressed because of the steric hindrance of the MPs. However, the MP-HA interaction improved the distribution of water molecules and metal cations around the MPs. The diffusion coefficient of HA decreased from 0.34 × 10-5 cm2/s to 0.20-0.28 × 10-5 cm2/s in the presence of MPs, implying that the diffusion of HA was retarded. The diffusion coefficients of polyethylene and polystyrene increased from 0.29 × 10-5 cm2/s and 0.18 × 10-5 cm2/s to 0.32 × 10-5 cm2/s and 0.22 × 10-5 cm2/s, respectively, indicating that the interaction with HA accelerated the migration of polyethylene and polystyrene. These findings highlight the potential environmental hazards posed by MPs in aquatic environments.
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Wang B, Zeng Y, Ou J, Xiong M, Qiu R. Different strengthening effects of amino and nitro groups on the bisphenol A adsorption of an aluminum metal-organic framework in aqueous solution. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:65712-65727. [PMID: 37093372 DOI: 10.1007/s11356-023-26725-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 03/26/2023] [Indexed: 05/03/2023]
Abstract
In recent years, metal-organic frameworks (MOFs) have been employed in numerous applications for adsorption. Researchers synthesize new MOFs by various methods, including the introduction of functional groups. In this study, three different aluminum-based MOFs (with non-functionalized, amino-functionalized, nitro-functionalized) were produced by hydrothermal synthesis and used for investigating typical endocrine disrupting chemicals (EDCs), namely for bisphenol A (BPA) adsorption. We used several methods to characterize the MOFs and conducted batch adsorption experiments to investigate their adsorption properties, and explore the influence of different functional groups on adsorption materials. The specific surface area of Al-MOF-NH2 is 6 times larger than that of Al-MOF according to the N2 adsorption and desorption isotherms of the material, that is, the BET of Al-MOF, Al-MOF-NH2, and Al-MOF-NO2 were 109.68, 644.03, and 146.60 m2/g. Note that although the same synthesis method is used, pore size is greatly changed because of the different functional groups. Al-MOF and Al-MOF-NO2 have more mesopores, and Al-MOF-NH2 is mainly microporous. The BPA adsorption capacities of Al-MOF, Al-MOF-NH2, and Al-MOF-NO2 were 46.43, 227.78, and 155.84 mg/L. The outcomes can also be explained by the improved adsorption performance from the addition of amino functional groups. In this research, the adsorption isotherms and adsorption kinetics of the three Al-MOFs for BPA were also investigated to explain the different adsorption properties of various functional groups. The results show that the amino-functionalized materials have remarkable characterization morphologies, uniform particle distributions, appropriate particle sizes, excellent specific surface areas, and superior adsorption effects.
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Zhang J, Jia Y, Wu W, Zhang Y, Chen P, Li X, Wei X, Li C, Li K. Influence of hemin on structure and emulsifying properties of soybean protein isolate. Food Chem 2023; 421:136183. [PMID: 37116442 DOI: 10.1016/j.foodchem.2023.136183] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 04/10/2023] [Accepted: 04/15/2023] [Indexed: 04/30/2023]
Abstract
Hemin has potential application value in plant-based meat analogues. However, mechanisms of interaction between hemin and plant protein are unclear. In this study, soy protein isolate (SPI) was applied to examine these interactions using multi-spectroscopic and molecular docking techniques. Additionally, the influence of hemin on emulsification of SPI was also explored. Fluorescence and UV-Vis spectra showed quenching of SPI by hemin was static, resulting in conformation changes on the surface amino acid residues, around which hydrophobicity was significantly reduced from 425.9 ± 16.2 to 108.9 ± 1.8 (p < 0.05). FTIR and CD spectra results suggested the protein secondary structure altered, and the content of α-helix and random coils increased by 1.13% and 1.43%, respectively. Furthermore, emulsifying properties of SPI were strengthened with increased hemin. This work improves our understanding of interactions between SPI and hemin and offer a theoretical basis for application of heme in plant-based meat analogues.
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Feng H, Xu X, Peng P, Yang C, Zou H, Chen C, Zhang Y. Sorption and desorption of epiandrosterone and cortisol on sewage sludge: Comparison to aquatic sediment. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 329:121663. [PMID: 37085099 DOI: 10.1016/j.envpol.2023.121663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 03/28/2023] [Accepted: 04/17/2023] [Indexed: 05/03/2023]
Abstract
Steroids have aroused global concern due to their potent endocrine-disrupting effects. Androgens and glucocorticoids are the most abundant species in sewage; however, our understanding of their fate and risks from the source to environmental sinks remains elusive. This study compared the sorption-desorption characteristics of epiandrosterone (EADR) and cortisol (CRL) in sewage sludge and aquatic sediment, and the surface and molecular interactions were tentatively investigated through infrared spectroscopy and the fluorescence excitation-emission matrix. The results showed that the sorption capacities of EADR and CRL in the sludge were 4015 L/kg and 81.17 L/kg, respectively, which are much larger than those in the sediment (EADR: 78.77 L/kg, CRL: 6.39 L/kg); 0.02%-1.2% of EADR and 0.2%-14.5% of CRL could be desorbed from sludge, while the desorption ratios were even lower in the sediment. The high organic content in the sludge might contribute to the larger sorption capacities, while the weak interaction between steroids and organic matter could lead to larger desorption potential. The sediment contained more mineral content and featured a larger specific surface area, which could be responsible for the greater desorption hysteresis for EADR and CRL. These results will help to better understand the potential risk of sewage sludge-associated steroids and their distribution in sediment-water systems.
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Li H, Yang J, Wang M, Ma X, Peng X. Studies on the inhibition of α-glucosidase by biflavonoids and their interaction mechanisms. Food Chem 2023; 420:136113. [PMID: 37054519 DOI: 10.1016/j.foodchem.2023.136113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 03/31/2023] [Accepted: 04/04/2023] [Indexed: 04/15/2023]
Abstract
Biflavonoids are a kind of polyphenol compounds with numerous biological functions. However, the potential inhibitory activities of biflavonoids on α-glucosidase are yet unknown. Here, the inhibitory effects of two biflavonoids (amentoflavone and hinokiflavone) on α-glucosidase and their interaction mechanisms were explored using multispectral approaches and molecular docking. The results showed that the inhibitory activities of biflavonoids were much better compared with monoflavonoid (apigenin) and acarbose, and the order of inhibition ability was hinokiflavone > amentoflavone > apigenin > acarbose. These flavonoids were noncompetitive inhibitors of α-glucosidase and showed synergistic inhibition effects with acarbose. Additionally, they could statically quench the intrinsic fluorescence of α-glucosidase, and form the non-covalent complexes with enzyme primarily through hydrogen bonds and van der Waals forces. The binding of flavonoids changed the conformational structure of α-glucosidase, therefore impairing the enzyme activity. The findings suggested that biflavonoids could be considered as potential hypoglycemic functional foods in diabetes therapy.
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Liu Y, Bu Y, Zhu W, Li J, Li X. Effects of divalent mercury on myosin structure of large yellow croaker and its binding mechanism: Multi-spectroscopies and molecular docking. Food Chem 2023; 418:135972. [PMID: 36965387 DOI: 10.1016/j.foodchem.2023.135972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 03/02/2023] [Accepted: 03/15/2023] [Indexed: 03/27/2023]
Abstract
Heavy metals have long biological half-lives and are therefore a major threat to aquatic organisms, especially fish. Divalent mercury (Hg(II)) is an important form from a toxicological viewpoint. In this paper, we studied the interaction mechanism between large yellow croaker myosin and Hg(II) by multi-spectroscopies and molecular docking. Hg(II) had a positive effect on improving the elasticity of myosin gel, and the constant increase of charge would destroy the gel. Hg(II) caused myosin to aggregate, and the protein's apparent structure rapidly increased in length. The content of α-helix obviously decreased, β-turns and β-sheet increased. The myosin and Hg(II) quenching type was static quenching. Thermodynamic analysis suggested hydrogen bonding and van der Waals forces were the main forces for the combination. The molecular docking further confirmed the mechanism of action. This study provides a theoretical guidance for the preventions and control of marine heavy metals.
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Liu RR, Zhai HL, Zhu M, Shao HP, Wang TH. Inhibitory mechanism of n-MTAB AuNPs for α-synuclein aggregation. J Mol Model 2023; 29:103. [PMID: 36944862 DOI: 10.1007/s00894-023-05513-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 03/13/2023] [Indexed: 03/23/2023]
Abstract
OBJECTIVE The aggregation of alpha-synuclein (α-syn) is closely related to the pathogenesis and dysfunction of Parkinson's disease. METHODS To investigate the potential of nanoparticlemediated therapy, the interactive mechanism between α-syn and n-myristyltrimethylammonium bromide (MTAB) Gold nanoparticles (AuNPs) with different diameters was explored by molecular dynamics simulations. RESULTS The results indicated that there was a directional interaction between α-syn and n-MTAB AuNPs, in which the driving force for the binding of the C-terminus in α-syn came from electrostatic interactions and the nonamyloid β component (NAC) domain exhibited weak hydrophobic interactions as well as electrostatic interaction, thereby preventing α-syn aggregation. Energy statistics and analysis showed that for 5-MTAB AuNPs, acidic amino acids such as Glu and Asp played a very important role. CONCLUSIONS This study not only demonstrated a theoretical foundation for the behavior of biomolecules directionally adsorbed on the surface of biofunctional nanoparticles but also indicated that 5-MTAB AuNPs may be a potential inhibitor against α-syn protein aggregation.
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The activity and mechanism of vidofludimus as a potent enzyme inhibitor against NDM-1-positive E. coli. Eur J Med Chem 2023; 250:115225. [PMID: 36870273 DOI: 10.1016/j.ejmech.2023.115225] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Revised: 02/11/2023] [Accepted: 02/20/2023] [Indexed: 03/03/2023]
Abstract
New Delhi metallo-β-lactamase-1 (NDM-1) is the most important and prevalent enzyme among all metallo-β-lactamases. NDM-1 can hydrolyze almost all-available β-lactam antibiotics including carbapenems, resulting in multidrug resistance, which poses an increasing clinical threat. However, there is no NDM-1 inhibitor approved for clinical treatment. Therefore, identifying a novel and potential enzyme inhibitor against NDM-1-mediated infections is an urgent need. In this study, vidofludimus was identified as a potential NDM-1 inhibitor by structure-based virtual screening and an enzyme activity inhibition assay. Vidofludimus significantly inhibited NDM-1 hydrolysis activity with a significant dose-dependent effect. When the vidofludimus concentration was 10 μg/ml, the inhibition rate and 50% inhibitory concentration were 93.3% and 13.8 ± 0.5 μM, respectively. In vitro, vidofludimus effectively restored the antibacterial activity of meropenem against NDM-1-positive Escherichia coli (E. coli), and the minimum inhibitory concentration of meropenem was decreased from 64 μg/ml to 4 μg/ml, a 16-fold reduction. The combination of vidofludimus and meropenem showed a significant synergistic effect with a fractional inhibitory concentration index of 0.125 and almost all the NDM-1-positive E. coli were killed within 12 h. Furthermore, the synergistic therapeutic effect of vidofludimus and meropenem in vivo was evaluated in mice infected with NDM-1 positive E. coli. Compared with the control treatment, vidofludimus combined with meropenem significantly improved the survival rate of mice infected with NDM-1-positive E. coli (P < 0.05), decreased the white blood cell count, the bacterial burden and inflammatory response induced by NDM-1-positive E. coli (P < 0.05), and alleviated histopathological damage in infected mice. It was demonstrated by molecular dynamic simulation, site-directed mutagenesis and biomolecular interaction that vidofludimus could interact directly with the key amino acids (Met67, His120, His122 and His250) and Zn2+ in the active site of NDM-1, thereby competitively inhibiting the hydrolysis activity of NDM-1 on meropenem. In summary, vidofludimus holds promise as anNDM-1 inhibitor, and the combination of vidofludimus and meropenem has potential as a therapeutic strategy for NDM-1-mediated infections.
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Yi B, Sun J, Liu Y, Zhang Z, Wang R, Shu M, Lin Z. Virtual screening and multi-targets investigation of novel diazine derivatives as potential xanthine oxidase inhibitors based on QSAR, molecular docking, ADMET properties, dynamics simulation and network pharmacology. Med Chem 2023; 19:704-716. [PMID: 36757039 DOI: 10.2174/1573406419666230209092231] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 11/28/2022] [Accepted: 12/07/2022] [Indexed: 02/10/2023]
Abstract
BACKGROUND Hyperuricemia is closely related to the occurrence of gout, hypertension, diabetes, hyperlipidemia, cardiovascular disease, kidney disease, metabolic syndrome, etc. However, xanthine oxidase inhibitors (XOIs) can fundamentally solve the problem of excessive uric acid. Compared to single-target drugs, multi-target drugs are not prone to adverse reactions and exert a synergistic effect. Therefore, the discovery of new multi-target XOIs and their mechanism of therapeutic hyperuricemia are important to overcome adverse effects and resistance to currently available drugs. OBJECTIVE The purpose of this paper is to obtain novel diazine derivatives as promising multi-target XOIs and discover the interaction mechanism for the better treatment of hyperuricemia. METHODS Novel multi-target XOIs, diazine derivatives, and their interaction mechanism have been obtained through QSAR, molecular docking, dynamics simulation, and network pharmacology. In addition, ADMET properties and synthetic accessibility of novel XOIs have been considered using ADMETLAB 2.0 and SwissADME. RESULTS 24 novel diazine derivatives as potential multi-target XOIs lead compounds have been found through virtual screening of the PubChem database. Moreover, the most notable top five compounds are worthy of further developing as multi-target XOIs drugs. XDH, TBK1, DGAT1, MYC, CDKN1A, PPARD, PDE6C, and EIF4E are recommended as relevant targets of therapeutic hyperuricemia. CONCLUSION Through the combination of different methods, we have discovered five novel promising diazine derivatives as potential multi-target XOIs drugs. Meanwhile, eight targets have been found to be helpful in the research on therapeutic hyperuricemia. We expect this investigation will offer clear insights into the production of efficient XOIs drugs.
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Chen H, Liu S, Wanyan X, Pang L, Dang Y, Zhu K, Yu X. Influencing factors of novice pilot SA based on DEMATEL-AISM method: From pilots' view. Heliyon 2023; 9:e13425. [PMID: 36820028 PMCID: PMC9937991 DOI: 10.1016/j.heliyon.2023.e13425] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 01/19/2023] [Accepted: 01/30/2023] [Indexed: 02/05/2023] Open
Abstract
Pilot situation awareness (SA) regulates flight safety, and inexperience may impair novice pilot reliability in SA. This study aims to determine the key influencing factors of novice pilot SA and to analyze the interrelationship and interaction mechanism of the factors. We investigated 55 novice pilots trained at aviation schools and identified the influencing factor index system by the Delphi survey. The method of Decision Making Trial and Evaluation (DEMATEL) combined with Adversarial Interpretive Structure Modeling (AISM) was adopted. The results show that: (1) The influencing factor index system includes 18 factors, divided into four categories: individual factors, team factors, task and human-machine system factors, and cockpit environment factors. (2) Team communication, team cooperation, basic cognitive ability, interface design, occupational age and experience, and authority gradient are the six crucial influencing factors. The former three have the greatest association with other factors, while the latter three are most likely to affect other factors. (3) Team communication, basic cognitive ability, and interface design are root-cause factors, of which team communication is the most fundamental. (4) The results of DEMATEL and AISM are consistent, both disclosing team communication as the fundamental factor with the highest priority, and cockpit environmental factors as the direct influencing factors but most susceptible to other factors. The present study can be viewed as a conducive attempt to extract vital influencing factors of novice pilot SA, and to provide ergonomic insights for determining the priorities to improve novice pilot SA in training and aircraft design for flight safety.
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Xu R, Fang F, Wang L, Luo J, Cao J. Insight into the interaction between trimethoprim and soluble microbial products produced from biological wastewater treatment processes. J Environ Sci (China) 2023; 124:130-138. [PMID: 36182123 DOI: 10.1016/j.jes.2021.11.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Revised: 11/10/2021] [Accepted: 11/10/2021] [Indexed: 06/16/2023]
Abstract
Soluble microbial products (SMPs), dissolved organic matter excreted by activated sludge, can interact with antibiotics in wastewater and natural water bodies. Interactions between SMPs and antibiotics can influence antibiotic migration, transformation, and toxicity but the mechanisms involved in such interactions are not fully understood. In this study, integrated spectroscopy approaches were used to investigate the mechanisms involved in interactions between SMPs and a representative antibiotic, trimethoprim (TMP), which has a low biodegradation rate and has been detected in wastewater. The results of liquid chromatography-organic carbon detection-organic nitrogen detection indicated that the SMPs used in the study contained 15% biopolymers and 28% humic-like substances (based on the total dissolved organic carbon concentration) so would have contained sites that could interact with TMP. A linear relationship of fluorescent intensities of tryptophan protein-like substances in SMP was observed (R2>0.99), indicating that the fluorescence enhancement between SMP and TMP occurred. Fourier-transform infrared spectroscopy and X-ray photoelectron spectroscopy indicated that carboxyl, carbonyl, and hydroxyl groups were the main functional groups involved in the interactions. The electrostatic and π-π interactions were discovered by the UV-vis spectra and 1H nuclear magnetic resonance spectra. Structural representations of the interactions between representative SMP subcomponents and TMP were calculated using density functional theory, and the results confirmed the conclusions drawn from the 1H nuclear magnetic resonance spectra. The results help characterize SMP-TMP complexes and will help understand antibiotic transformations in wastewater treatment plants and aquatic environments.
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Dilxat D, Liang T, Wang Y, Habibul N. Insights into the interaction mechanism of ofloxacin and functionalized nano-polystyrene. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 284:121792. [PMID: 36088742 DOI: 10.1016/j.saa.2022.121792] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2022] [Revised: 08/19/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
Abstract
Nano-plastics (NPs), an emerging contaminant in the environment, have a larger specific surface area and can act as a carrier of other contaminants. Thus, insights into the interaction mechanisms between NPs and other pollutants are crucial for the assessment of environmental impacts of NPs in the ecosystems. In this study, the interaction mechanism between NPs and ofloxacin (OFL) were investigated via kinetics, fluorescence quenching, and two-dimensional correlation spectroscopy (2DCOS). The adsorption kinetics of OFL on carboxyl-modified polystyrene (PS-COOH) and amine modified polystyrene (PS-NH2) closely fitted the pseudo-second-order kinetics model (R2 = 0.99). Adsorption kinetics indicated that chemical adsorption is dominant mechanism, and the Fourier Transform Infrared Spectrometer (FT-IR) and X-ray photoelectron spectroscopy (XPS) results showed that the electronic interaction, π-π, and H-binding were also involved in the adsorption process. OFL showed strong fluorescence quenching in the presence of NPs. Stern-Volmer quenching was negatively related with the temperature, which was dominated by the static type of quenching. 2DCOS indicated that the π-π conjugation was dominant in the interaction process, and the interaction process was dependent on the solution pH and salinity. Overall, this work provides new insights into the interaction mechanism of NPs and antibiotics in the aquatic ecosystems.
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Wang Y, Jia L, Guo B, Shen X, Zheng X, Xiang J, Jin Y. Investigation of interaction mechanisms during co-combustion of sewage sludge and coal slime: Combustion characteristics and NO/SO 2 emission behavior. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 851:158166. [PMID: 35988607 DOI: 10.1016/j.scitotenv.2022.158166] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 07/30/2022] [Accepted: 08/16/2022] [Indexed: 06/15/2023]
Abstract
Co-combustion of sewage sludge (SS) and coal slime (CS) is a promising method to achieve resource utilization of both solid wastes. However, the emission characteristics of NO/SO2 and the interaction mechanisms between SS and CS are unclear. In this paper, the co-combustion characteristics and NO/SO2 emission behavior of SS and CS were investigated using a thermogravimetric analyzer and a tube furnace combustion system, and the interactions between SS and CS were explored. The results revealed the presence of remarkable interactions between SS and CS during the co-combustion. For the combustion characteristics, non-catalytic factors (interaction between volatiles and heat synergy) and catalytic factors (catalysis of inorganic components) controlled the combustion stage of the heavy volatiles and fixed carbon of the blends, respectively, leading to an earlier combustion process. For NO and SO2 emission characteristics, SS-CS co-combustion had significant NO in-situ reduction and self-desulphurization characteristics at 800 °C and 900 °C. The best inhibition occurred at 900 °C and 50 % CS ratio, and NO and SO2 emission amounts were reduced by 0.25 mg/g and 1.37 mg/g, respectively, compared to the theoretical values. At 1000 °C, co-combustion promoted the emissions of both NO and SO2. The interaction mechanisms suggested that the reducing atmosphere created and the reducing gases released by SS combustion promoted the reduction of CS-NO, while the char formed by CS exhibited a significant reduction of SS-NO. In addition, the effect of CS addition on the mass transfer process enhanced the sulfur fixation of inorganic components in SS, which led to the suppression of SO2 production. These findings provide a better understanding of the interactions between SS and CS during SS-CS co-combustion.
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Shi M, Min X, Tian C, Hao T, Zhu S, Ge Y, Wang Q, Yan X, Lin Z. Mechanisms of Pb(II) coprecipitation with natrojarosite and its behavior during acid dissolution. J Environ Sci (China) 2022; 122:128-137. [PMID: 35717078 DOI: 10.1016/j.jes.2021.10.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 10/09/2021] [Accepted: 10/09/2021] [Indexed: 06/15/2023]
Abstract
Lead (Pb) coprecipitation with jarosite is common in natural and engineered environments, such as acid mine drainage (AMD) sites and hydrometallurgical industry. Despite the high relevance for environmental impact, few studies have examined the exact interaction of Pb with jarosite and the dissolution behavior of each phase. In the present work, we demonstrate that Pb mainly interacts with jarosite in four modes, namely incorporation, occlusion, physically mixing, and chemically mixing. For comparison, the four modes of Pb-bearing natrojarosite were synthesized and characterized separately. Batch dissolution experiments were undertaken on these synthetic Pb-bearing natrojarosites under pH 2 to simulate the AMD environments. The introduction of Pb decreases the final Fe releasing efficiency of jarosite-type compounds from 18.18% to 3.45%-5.01%, showing a remarkable inhibition of their dissolution. For Pb releasing behavior, PbSO4 dissolves in preference to Pb-substituted natrojarosite, i.e., (Na, Pb)-jarosite, which primarily results in the sharp increase of Pb releasing concentration (> 40 mg/L). PbSO4 occlusion by jarosite-type compounds can significantly reduce the release of Pb. The results of this study could provide useful information regarding Fe and Pb cycling in acidic natural and engineered environments.
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Shao Z, Su J, Dong J, Liang M, Xiao J, Liu J, Zeng Q, Li Y, Huang W, Chen C. Aggregation kinetics of polystyrene nanoplastics in gastric environments: Effects of plastic properties, solution conditions, and gastric constituents. ENVIRONMENT INTERNATIONAL 2022; 170:107628. [PMID: 36395559 DOI: 10.1016/j.envint.2022.107628] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 10/02/2022] [Accepted: 11/10/2022] [Indexed: 06/16/2023]
Abstract
Nanoplastics are inevitably ingested into human gastric environment, wherein their aggregation kinetics and interactions with gastric constituents remain unclear. This study investigated the early-stage (20 min) and long-term (1-6 h) aggregation kinetics of four commonly-found polystyrene nanoplastics (PSNPs) including NP100 (100-nm), A-NP100 (100-nm, amino-modified), C-NP100 (100-nm, carboxyl-modified), and NP500 (500-nm) under gastric conditions. Five simulated human gastric fluids (SGFs) including SGF1-3 (0-3.2 g/L pepsin and 34.2 mM NaCl), SGF4 (400 mM glycine), and SGF5 (nine constituents), three pH (2, fasted state; 3.5, late-fed state; and 5, early-fed state), and 1-100 mg/L PSNPs were examined. Aggregation rates ranked NP100 > A-NP100 ≈ C-NP100 > NP500, SGF5 > SGF4 > SGF3 > SGF2 > SGF1, and pH 2 > 3.5 > 5. Increasing PSNP concentration enhanced aggregation rate up to 13.82 nm/s. Aggregation behavior generally followed the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory. Pepsin, glycine, and proteose-peptone strongly influenced PSNP stability via electrostatic interaction and steric hindrance imparted by protein corona. Freundlich isotherm suggested that PSNPs adsorbed organic constituents following lysozyme > porcine bile > proteose-peptone > pepsin > glycine > D-glucose, inducing changes in constituent structure and PSNP properties. These findings provide insights on the transport of nanoplastics in the gastric environments.
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Khan D, Kuntail J, Sinha I. Mechanism of phenol and p-nitrophenol adsorption on kaolinite surface in aqueous medium: A molecular dynamics study. J Mol Graph Model 2022; 116:108251. [PMID: 35714524 DOI: 10.1016/j.jmgm.2022.108251] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 06/05/2022] [Accepted: 06/07/2022] [Indexed: 12/14/2022]
Abstract
Very few aqueous medium experimental studies focus on the molecular interaction mechanism between the adsorbent and the adsorbate. Herein, we investigate the adsorption of two organic pollutants, phenol and p-nitrophenol (PNP) in dilute aqueous solution conditions on kaolinite (001) surface through classical molecular dynamics (MD) simulations. The present investigation addresses both adsorption isotherms and mechanistic issues. MD simulations at different solute concentrations generated density profiles and, thereby, adsorption isotherms. The data generated for phenol adsorption fitted both Langmuir and Freundlich isotherm models equally well. Alternatively, PNP adsorption data on the kaolinite surface followed the Langmuir model better. Overall, phenol exhibits a higher adsorption capacity on kaolinite than PNP. These results support the experimental observations made in earlier publications in the literature. Radial distribution functions (RDF) between various atom types on the adsorbent and molecules in the solution phase point toward hydrogen bond-dominated interaction mechanisms for organic pollutants.
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Bi S, Pan X, Zhang W, Ma Z, Lao F, Shen Q, Wu J. Non-covalent interactions of selected flavors with pea protein: Role of molecular structure of flavor compounds. Food Chem 2022; 389:133044. [PMID: 35489259 DOI: 10.1016/j.foodchem.2022.133044] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 03/27/2022] [Accepted: 04/20/2022] [Indexed: 11/17/2022]
Abstract
The influence of the molecular structures of flavor compounds (specifically, variations in chain length and functional groups) on the binding of the flavor compounds (Z)-2-penten-1-ol, hexanal, and (E)-2-octenal to pea protein was investigated. The results showed that the molecular structures of the flavor compounds strongly influenced their binding affinity for pea protein. Specifically, (E)-2-octenal exhibited a higher binding affinity and a higher Stern-Volmer constant with pea protein than both hexanal and (Z)-2-penten-1-ol. Thermodynamic analysis indicated that the flavor compound-pea protein interactions were spontaneous. Hydrophobic interactions were dominant in the non-covalent interactions between (E)-2-octenal/(Z)-2-penten-1-ol and pea protein, whereas hydrogen bonding was dominant in the non-covalent interactions between hexanal and pea protein. Surface hydrophobicity measurements, the use of bond-disrupting agents, and molecular docking further supported the hypothesis that hydrogen bonding, as well as hydrophobic interactions, occurred between the flavor compounds and pea protein.
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Naveen Kumar BV, Venkatarao K, Basha Shaik E, Nirmal Rajeev Y, Ramachandra Rao K, Cole S. Tunable Luminescence from Bi 3+ Sensitized La 2 Zr 2 O 7 : Eu 3+ Red Nanophosphors for Display Applications. LUMINESCENCE 2022; 37:1942-1952. [PMID: 36064942 DOI: 10.1002/bio.4378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 08/17/2022] [Accepted: 08/30/2022] [Indexed: 11/09/2022]
Abstract
Bi3+ sensitized, Eu3+ activated La2 Zr2 O7 nanophosphors are prepared successfully by simple wet chemical method. Strong blue emission of singly doped La2 Zr2 O7 with Bi3+ ions was observed at 310 nm excitation, its wide emission spectrum has a peak maximum at 465 nm ascribed to electronic transition 3 P1 →1 S0 of Bi3+ ions. The recorded photoluminescence spectra of x at % Eu3+ co-doped La2 Zr2 O7 , when excited at 285 nm, the emission spectrum exhibits maximum peaks at wavelength values 615 nm, 646 nm and 665 nm which are ascribed to 5 D0 →7 F2 , 5 D0 →7 F3 and 5 D0 →7 F4 transitions of Eu3+ ions respectively. The chromaticity coordinates for optimized sample was found to be (0.519, 0.329). Sensitizing with Bi3+ ions can affect the luminescence properties of La2 Zr2 O7 :Eu3+ phosphors. With reference to the change in Eu3+ concentration from x = 1 to 5 at %, color tunable luminescence from blue to orange, red of La2 Zr2 O7 : Bi3+ /Eu3+ phosphors are observed. The life time decay values, energy level description and CIE chromatic color coordinates for Bi3+ , Eu3+ in La2 Zr2 O7 : Bi3+ /Eu3+ co-doped sample was discussed. The spectral overlap between sensitizer, activator ions confirms the efficient energy transfer from Bi3+ ions to Eu3+ in La2 Zr2 O7 : Bi3+ /Eu3+ co-doped sample and is via dipole-quadruple mechanism.
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Li R, Huang L, Zhang Z, Chen J, Tang H. Integrated multispectroscopic analysis and molecular docking analyses of the structure-affinity relationship and mechanism of the interaction of flavonoids with zein. Food Chem 2022; 386:132839. [PMID: 35366631 DOI: 10.1016/j.foodchem.2022.132839] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 03/23/2022] [Accepted: 03/26/2022] [Indexed: 11/04/2022]
Abstract
Zein is a desired carrier to construct a delivery system for flavonoids. However, studies examining the binding of flavonoids with zein are still inadequate. Therefore, the structure-affinity relationship and mechanism underlying the interaction between flavonoids and zein were investigated using multiple spectroscopy techniques and molecular docking. The UV-vis spectra revealed ground-state complex formation. The fluorescence quenching spectra suggested that flavonoids effectively quenched the intrinsic fluorescence of zein mainly through static quenching. The structure-affinity relationship revealed the key structural elements and preferred substituents at specific sites of flavonoids related to binding affinity with zein. The synchronous, ANS-binding fluorescence and FT-IR spectra confirmed that flavonoids induced a conformational change in zein secondary structure. Additionally, molecular docking further provided a favorable binding conformation and underlined the important role of hydrophobic interactions and hydrogen bonds in their interactions. These findings suggest that different flavonoid structures significantly influence binding behaviors with zein.
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