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76
Day P, Sharff A, Parra L, Cleasby A, Williams M, Hörer S, Nar H, Redemann N, Tickle I, Yon J. Structure of a CBS-domain pair from the regulatory gamma1 subunit of human AMPK in complex with AMP and ZMP. ACTA CRYSTALLOGRAPHICA SECTION D: BIOLOGICAL CRYSTALLOGRAPHY 2007;63:587-96. [PMID: 17452784 DOI: 10.1107/s0907444907009110] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2007] [Accepted: 02/23/2007] [Indexed: 11/10/2022]
77
Ujjinamatada RK, Baier A, Borowski P, Hosmane RS. An analogue of AICAR with dual inhibitory activity against WNV and HCV NTPase/helicase: synthesis and in vitro screening of 4-carbamoyl-5-(4,6-diamino-2,5-dihydro-1,3,5-triazin-2-yl)imidazole-1-beta-D-ribofuranoside. Bioorg Med Chem Lett 2007;17:2285-8. [PMID: 17289387 PMCID: PMC2674300 DOI: 10.1016/j.bmcl.2007.01.074] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2006] [Revised: 01/13/2007] [Accepted: 01/18/2007] [Indexed: 10/23/2022]
78
Cerasino L, Hannon MJ, Sletten E. DNA three-way junction with a dinuclear iron(II) supramolecular helicate at the center: a NMR structural study. Inorg Chem 2007;46:6245-51. [PMID: 17407284 DOI: 10.1021/ic062415c] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
79
Robertson MP, Scott WG. The structural basis of ribozyme-catalyzed RNA assembly. Science 2007;315:1549-53. [PMID: 17363667 DOI: 10.1126/science.1136231] [Citation(s) in RCA: 84] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
80
Thompson AA, Albertini RA, Peersen OB. Stabilization of poliovirus polymerase by NTP binding and fingers-thumb interactions. J Mol Biol 2007;366:1459-74. [PMID: 17223130 PMCID: PMC1941708 DOI: 10.1016/j.jmb.2006.11.070] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2006] [Revised: 11/21/2006] [Accepted: 11/22/2006] [Indexed: 10/23/2022]
81
Srivatsan SG, Tor Y. Fluorescent pyrimidine ribonucleotide: synthesis, enzymatic incorporation, and utilization. J Am Chem Soc 2007;129:2044-53. [PMID: 17256858 PMCID: PMC2517582 DOI: 10.1021/ja066455r] [Citation(s) in RCA: 141] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
82
Morar M, Anand R, Hoskins AA, Stubbe J, Ealick SE. Complexed structures of formylglycinamide ribonucleotide amidotransferase from Thermotoga maritima describe a novel ATP binding protein superfamily. Biochemistry 2007;45:14880-95. [PMID: 17154526 PMCID: PMC2527724 DOI: 10.1021/bi061591u] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
83
Meli M, Pennati M, Curto M, Daidone MG, Plescia J, Toba S, Altieri DC, Zaffaroni N, Colombo G. Small-molecule targeting of heat shock protein 90 chaperone function: rational identification of a new anticancer lead. J Med Chem 2007;49:7721-30. [PMID: 17181154 DOI: 10.1021/jm060836y] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
84
Reipa V, Niaura G, Atha DH. Conformational analysis of the telomerase RNA pseudoknot hairpin by Raman spectroscopy. RNA (NEW YORK, N.Y.) 2007;13:108-15. [PMID: 17119100 PMCID: PMC1705750 DOI: 10.1261/rna.182607] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2006] [Accepted: 09/26/2006] [Indexed: 05/12/2023]
85
Liu S, Lu G. Interaction of cationic vesicle with ribonucleotides (AMP, ADP, and ATP) and physicochemical characterization of DODAB/ribonucleotides complexes. Biophys Chem 2006;127:19-27. [PMID: 17182168 DOI: 10.1016/j.bpc.2006.11.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2006] [Revised: 11/24/2006] [Accepted: 11/27/2006] [Indexed: 11/22/2022]
86
Suzuki T, Moriyama K, Otsuka C, Loakes D, Negishi K. Template properties of mutagenic cytosine analogues in reverse transcription. Nucleic Acids Res 2006;34:6438-49. [PMID: 17130163 PMCID: PMC1702492 DOI: 10.1093/nar/gkl761] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]  Open
87
Yasukawa T, Reyes A, Cluett TJ, Yang MY, Bowmaker M, Jacobs HT, Holt IJ. Replication of vertebrate mitochondrial DNA entails transient ribonucleotide incorporation throughout the lagging strand. EMBO J 2006;25:5358-71. [PMID: 17066082 PMCID: PMC1636616 DOI: 10.1038/sj.emboj.7601392] [Citation(s) in RCA: 166] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2006] [Accepted: 09/26/2006] [Indexed: 01/06/2023]  Open
88
Giul'akhmetov SG, Omarov IA, Mamedov ZM, Kuliev AA. [Isolation and study of active ATP-dependent phosphofructokinase from apple fruits Pyrus domestica Borkh]. PRIKLADNAIA BIOKHIMIIA I MIKROBIOLOGIIA 2006;42:534-8. [PMID: 17066952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
89
Kawano S, Kakuta Y, Nakashima T, Kimura M. Crystal structures of the Nicotiana glutinosa ribonuclease NT in complex with nucleoside monophosphates. J Biochem 2006;140:375-81. [PMID: 16870673 DOI: 10.1093/jb/mvj164] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
90
Constantine CZ, Starks CM, Mill CP, Ransome AE, Karpowicz SJ, Francois JA, Goodman RA, Kappock TJ. Biochemical and structural studies of N5-carboxyaminoimidazole ribonucleotide mutase from the acidophilic bacterium Acetobacter aceti. Biochemistry 2006;45:8193-208. [PMID: 16819818 DOI: 10.1021/bi060465n] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
91
Midtgaard SF, Assenholt J, Jonstrup AT, Van LB, Jensen TH, Brodersen DE. Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain. Proc Natl Acad Sci U S A 2006;103:11898-903. [PMID: 16882719 PMCID: PMC2131688 DOI: 10.1073/pnas.0604731103] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
92
DeLucia AM, Chaudhuri S, Potapova O, Grindley NDF, Joyce CM. The properties of steric gate mutants reveal different constraints within the active sites of Y-family and A-family DNA polymerases. J Biol Chem 2006;281:27286-91. [PMID: 16831866 DOI: 10.1074/jbc.m604393200] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
93
O'Toole AS, Miller S, Haines N, Zink MC, Serra MJ. Comprehensive thermodynamic analysis of 3' double-nucleotide overhangs neighboring Watson-Crick terminal base pairs. Nucleic Acids Res 2006;34:3338-44. [PMID: 16820533 PMCID: PMC1500867 DOI: 10.1093/nar/gkl428] [Citation(s) in RCA: 81] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
94
Vengrova S, Dalgaard JZ. The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides. EMBO Rep 2006;7:59-65. [PMID: 16299470 PMCID: PMC1369229 DOI: 10.1038/sj.embor.7400576] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2005] [Revised: 10/04/2005] [Accepted: 10/12/2005] [Indexed: 11/09/2022]  Open
95
Massoud SS, Corfù NA, Griesser R, Sigel H. Acid-base properties of xanthosine 5'-monophosphate (XMP) and of some related nucleobase derivatives in aqueous solution: micro acidity constant evaluations of the (N1)H versus the (N3)H deprotonation ambiguity. Chemistry 2006;10:5129-37. [PMID: 15372679 DOI: 10.1002/chem.200400490] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
96
Madsen AS, Hrdlicka PJ, Kumar TS, Wengel J. Synthesis, nucleic acid hybridization properties and molecular modelling studies of conformationally restricted 3'-O,4'-C-methylene-linked alpha-L-ribonucleotides. Carbohydr Res 2006;341:1398-407. [PMID: 16709404 DOI: 10.1016/j.carres.2006.04.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2006] [Revised: 04/07/2006] [Accepted: 04/08/2006] [Indexed: 01/09/2023]
97
Alberty RA. Thermodynamic properties of enzyme-catalyzed reactions involving guanine, xanthine, and their nucleosides and nucleotides. Biophys Chem 2006;121:157-62. [PMID: 16466672 DOI: 10.1016/j.bpc.2006.01.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2005] [Revised: 01/11/2006] [Accepted: 01/11/2006] [Indexed: 11/26/2022]
98
Håkansson P, Hofer A, Thelander L. Regulation of mammalian ribonucleotide reduction and dNTP pools after DNA damage and in resting cells. J Biol Chem 2006;281:7834-41. [PMID: 16436374 DOI: 10.1074/jbc.m512894200] [Citation(s) in RCA: 222] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
99
Rao Z. YjjX: from structure "Tu" function. Structure 2006;13:1401-2. [PMID: 16216571 DOI: 10.1016/j.str.2005.09.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
100
Saladino R, Crestini C, Ciciriello F, Di Mauro E, Costanzo G. Origin of informational polymers: differential stability of phosphoester bonds in ribomonomers and ribooligomers. J Biol Chem 2006;281:5790-6. [PMID: 16407319 DOI: 10.1074/jbc.m512545200] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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