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Bandyopadhyay S, Sasmal D, Biswas TK, Samanta I, Ghosh MK. Serological evidence of antibodies against Chlamydophila abortus in free-ranging yak (Poephagus grunniens) in Arunachal Pradesh, India. REV SCI TECH OIE 2010; 28:1051-5. [PMID: 20462163 DOI: 10.20506/rst.28.3.1948] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Serum samples were randomly collected from 172 free-ranging yak (Poephagus grunniens, presently Bos grunniens) from six different yak tracts of Arunachal Pradesh, India, and subjected to enzyme-linked immunosorbent assay to detect the presence of specific antibodies against Chlamydophila abortus. The overall prevalence of this disease in yak was 35%. The prevalence of Cp. abortus-specific antibodies was significantly higher in yak cows (41%) than among bulls (25%). The highest prevalence (39%: 95% confidence interval [Cl] = 27, 55) was found in yak between one and three years of age, while the lowest prevalence (20%: 95% CI = 10, 41) was reported in yak below one year of age.
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102
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Ali-Fehmi R, Nahleh ZA, Ahmed Q, Sethi S, Sakr W, Hussein Y, Ibrahim M, Albashiti B, Hayek K, Bandyopadhyay S. The concordance of estrogen and progesterone receptor status (ER-PR) and HER2/neu expression in DCIS coexistent with micro-invasive and invasive carcinoma. J Clin Oncol 2010. [DOI: 10.1200/jco.2010.28.15_suppl.e21101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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103
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Bandyopadhyay S, Sethi S, Schultz D, GABA AR, Elshaikh MA, Munkarah A, Albashiti B, Ali-Fehmi R. Mixed type endometrial carcinoma: Clinicopathologic comparison between two large academic institutions. J Clin Oncol 2010. [DOI: 10.1200/jco.2010.28.15_suppl.e15559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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104
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Sethi S, Sarkar FH, Ahmed Q, Bandyopadhyay S, Nahleh ZA, Sakr W, Munkarah A, Ali-Fehmi R. Molecular markers for epithelial-mesenchymal transition (EMT) and tumor aggressiveness in breast carcinoma. J Clin Oncol 2010. [DOI: 10.1200/jco.2010.28.15_suppl.10604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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105
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Semaan A, Sethi S, Bandyopadhyay S, Munkarah A, Ali-Fehmi R. Myeloperoxidase: A potential marker in low-grade epithelial ovarian carcinoma. J Clin Oncol 2010. [DOI: 10.1200/jco.2010.28.15_suppl.e15531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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106
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Bandyopadhyay S, Chakraborty D, Sarkar T, Pal B, Sasmal D, Biswas TK, Ghosh MK, Sarkar M. A serological survey of antibodies against bovine herpesvirus-1 in yak (Poephagus grunniens) in Arunachal Pradesh in India. REV SCI TECH OIE 2010; 28:1045-50. [PMID: 20462162 DOI: 10.20506/rst.28.3.1949] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Serum samples were collected from 254 yak (Poephagus grunniens, presently Bos grunniens) in different yak tracts of India. These samples were then screened by virus neutralisation test (VNT) and avidin-biotin enzyme-linked immunosorbent assay (AB-ELISA) to study the seroprevalence of antibodies against bovine herpesvirus type 1 (BHV-1). The overall seroprevalence in yak was found to be 41% (105) by VNT and AB-ELISA. The sex of the animal, whether it was on a farm or free-ranging and the location of the different yak tracts did not seem to have any effect on seroprevalence. However, seroprevalence was found to increase with the age of the animals, being highest in yak older than three years of age (49%). Yak generally share feeding, watering and grazing areas with other domestic and wild animals and this common ecological niche is thought to be a possible avenue of infection. This is the first time that the seroprevalence of antibodies against BHV-1 has been studied in yak in India.
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107
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Bandyopadhyay S, Mandal S, Datta KK, Devi P, De S, Bera AK, Bhattacharya D. Economic analysis of risk of gastrointestinal parasitic infection in cattle in North Eastern States of India. Trop Anim Health Prod 2010; 42:1481-6. [PMID: 20411327 DOI: 10.1007/s11250-010-9582-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/08/2010] [Indexed: 11/25/2022]
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108
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Bera AK, Bhattacharya D, Pan D, Manna B, Bandyopadhyay S, Das SK. Effect of heat killed Mycobacterium phlei on body weight gain and management of caecal coccidiosis in broiler chickens. Res Vet Sci 2010; 89:196-9. [PMID: 20347460 DOI: 10.1016/j.rvsc.2010.03.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2007] [Revised: 02/28/2010] [Accepted: 03/08/2010] [Indexed: 11/26/2022]
Abstract
The objective of this study was to evaluate the immunotherapeutic potential of heat killed Mycobacterium phlei in broiler chicken against experimentally produced Eimeria tenella infection. The selected dose of E. tenella oocyst (5x10(3) sporulated oocysts per bird) was capable of producing a mild form of caecal coccidiosis as observed by significant difference in body weight gain, clinical findings and caecal lesion score. Heat killed M. phlei was fed orally at 10 mg per bird with sterile PBS vehicle at alternate day for four doses. Our study reveals that per day body weight gain was significantly (p<0.01) higher for healthy control compared to coccidia infected group. The group fed M. phlei along with coccidial challenge showed significantly (p<0.05) higher body weight gain than infected control group. Heat killed M. phlei feeding also found effective to reduce the caecal lesion score significantly (p<0.05) in comparison to E. tenella infected untreated group. IgA concentrations in serum and bile at 7-day post challenge of coccidial oocyst was also significantly (p<0.01) higher in M. phlei fed group when compared to coccidia infected and healthy control group. We concluded that use of heat killed M. phlei has a beneficial role as an immunostimulant against caecal coccidiosis in broiler chicken.
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109
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Bandyopadhyay S, Ganguli B, Chatterjee A. A review of multivariate longitudinal data analysis. Stat Methods Med Res 2010; 20:299-330. [PMID: 20212072 DOI: 10.1177/0962280209340191] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Repeated observation of multiple outcomes is common in biomedical and public health research. Such experiments result in multivariate longitudinal data, which are unique in the sense that they allow the researcher to study the joint evolution of these outcomes over time. Special methods are required to analyse such data because repeated observations on any given response are likely to be correlated over time while multiple responses measured at a given time point will also be correlated. We review three approaches for analysing such data in the light of the associated theory, applications and software. The first method consists of the application of univariate longitudinal tools to a single summary outcome. The second method aims at estimating regression coefficients without explicitly modelling the underlying covariance structure of the data. The third method combines all the outcomes into a single joint multivariate model. We also introduce a multivariate longitudinal dataset and use it to illustrate some of the techniques discussed in the article.
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Bandyopadhyay G, Bandyopadhyay S, Kundimi S, Bankey P, Miller-Graziano C. Posttrauma Increased Thrombospondin-1 Production Contributes to Increased Sensitivity of T Cell to TRAIL-mediated Post-injury Apoptosis. Clin Immunol 2010. [DOI: 10.1016/j.clim.2010.03.219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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111
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Kugland NL, Gregori G, Bandyopadhyay S, Brenner CM, Brown CRD, Constantin C, Glenzer SH, Khattak FY, Kritcher AL, Niemann C, Otten A, Pasley J, Pelka A, Roth M, Spindloe C, Riley D. Evolution of elastic x-ray scattering in laser-shocked warm dense lithium. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 80:066406. [PMID: 20365285 DOI: 10.1103/physreve.80.066406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2009] [Indexed: 05/29/2023]
Abstract
We have studied the dynamics of warm dense Li with near-elastic x-ray scattering. Li foils were heated and compressed using shock waves driven by 4-ns-long laser pulses. Separate 1-ns-long laser pulses were used to generate a bright source of 2.96 keV Cl Ly- alpha photons for x-ray scattering, and the spectrum of scattered photons was recorded at a scattering angle of 120 degrees using a highly oriented pyrolytic graphite crystal operated in the von Hamos geometry. A variable delay between the heater and backlighter laser beams measured the scattering time evolution. Comparison with radiation-hydrodynamics simulations shows that the plasma is highly coupled during the first several nanoseconds, then relaxes to a moderate coupling state at later times. Near-elastic scattering amplitudes have been successfully simulated using the screened one-component plasma model. Our main finding is that the near-elastic scattering amplitudes are quite sensitive to the mean ionization state Z[over ] and by extension to the choice of ionization model in the radiation-hydrodynamics simulations used to predict plasma properties within the shocked Li.
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112
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Ray S, Mukherjee D, Bandyopadhyay S. Growth patterns of fossil vertebrates as deduced from bone microstructure: case studies from India. J Biosci 2009; 34:661-72. [DOI: 10.1007/s12038-009-0055-x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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113
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Chakraborty P, De D, Bandyopadhyay S, Bhattacharyya D. Human aqueous placental extract as a wound healer. J Wound Care 2009; 18:462, 464-7. [DOI: 10.12968/jowc.2009.18.11.44987] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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114
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Sarkar M, Bandyopadhyay S, Krishnan G, Prakash BS. Seasonal variations in plasma glucocorticoid levels in yaks (Poephagus grunniens L.) (Bos grunniens). Trop Anim Health Prod 2009; 42:421-4. [DOI: 10.1007/s11250-009-9437-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2009] [Accepted: 08/13/2009] [Indexed: 10/20/2022]
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115
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Pan D, Bera AK, Das S, Bandyopadhyay S, Rana T, Bandyopadhyay S, Das SK, Bhattacharya D. Use of zinc chloride as alternative stimulant for in vitro study of nitric oxide production pathway in avian splenocyte culture. Mol Biol Rep 2009; 37:2223-6. [PMID: 19690983 DOI: 10.1007/s11033-009-9708-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2009] [Accepted: 07/31/2009] [Indexed: 11/29/2022]
Abstract
Nitric Oxide (NO) plays an important role for regulation of cellular and vascular response of inflammation and initiates killing mechanism in the host-defense reactions. NO production is regulated through inducible nitric oxide synthase (iNOS) pathway in response to infections and injurious agents besides pro-inflammatory cytokines secreted by the host. Evaluation of NO pathway is one of the major targets which can evaluate various immunomodulators for their therapeutic interaction on innate immune system. Lipopolysaccharide (LPS) and concavalin A (ConA) are used as standard mitogen for peripheral blood mononuclear cells and splenocyte of mammalian and avian cell culture. During the present investigation ZnCl(2) has been explored as standard mitogen and result was comparable with standard mitogen. The result has been evaluated on the basis of relative mRNA expression of iNOS and interferon gamma and nitrite assay. Observation indicated significantly higher expression of both biomolecules in comparison to control, LPS, ConA treated group. This study indicated that, ZnCl(2) can also be used as standard stimulant for molecular mining of innate immunity.
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116
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Chakraborty S, Sengupta R, Dasgupta S, Mukhopadhyay R, Bandyopadhyay S, Joshi M, Ameta SC. Synthesis and characterization ofin situsodium-activated and organomodified bentonite clay/styrene-butadiene rubber nanocomposites by a latex blending technique. J Appl Polym Sci 2009. [DOI: 10.1002/app.30146] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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117
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Saha S, Bandyopadhyay S. Performance Evaluation of Some Symmetry-Based Cluster Validity Indexes. ACTA ACUST UNITED AC 2009. [DOI: 10.1109/tsmcc.2009.2013335] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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118
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Bandyopadhyay S, Pal P, Bhattacharya D, Bera AK, Pan D, Rahman H. A report on the prevalence of gastrointestinal parasites in yaks (Bos poephagus) in the cold desert area of North Sikkim, India. Trop Anim Health Prod 2009; 42:119-21. [PMID: 19548102 DOI: 10.1007/s11250-009-9394-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2009] [Accepted: 06/08/2009] [Indexed: 11/30/2022]
Abstract
Faecal samples were collected from 348 yaks(Bos poephagus) in and around Gurudogmer Plateau, a cold desert area in North Sikkim, India. The prevalence of gastrointestinal parasitic infection was recorded at 10.05% in both the organized and traditionally managed farms of yak. The pattern of infection was either single (2.58%) or mixed (7.47%) with a faecal egg count range of 100-200 eggs per gram of faeces in positive animals. Among the helminths, Haemonchus spp. infection was predominant (6.89%) followed by Nematodirus spp. (1.72%), Cooperia spp. (1.43%) and Dicrocoelium spp. (0.29%).
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119
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Bandyopadhyay S, Nahleh Z, Ali Fehmi R, Arabi H, Sakr W, Munkarah A, Kruger M. Enhancer of zeste homologue 2 ( EZH-2) expression in breast cancer: a novel marker and potential target. J Clin Oncol 2009. [DOI: 10.1200/jco.2009.27.15_suppl.e22154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
e22154 Background: EZH-2 is a protein involved in cell cycle regulation; it belongs to the Polycomb group of proteins and has been suggested to be associated with aggressive breast cancer. In hormone receptor negative (HR-) breast carcinomas, novel therapeutic targets are needed. Few markers have achieved the success of Her-2/neu as targeted therapy making the search for novel treatment strategies imperative. In our study we investigate the expression of EZH2 in a cohort of hormone receptor negative breast carcinomas. Methods: We identified a consecutive cohort of 84 cases of HR- breast carcinoma in 2005–2006, from the Pathology department archives. Tumor grade, size, presence or absence of DCIS, lymph node status and Her2/neu expression were documented. The race of the patients was also noted. Immunohistochemical staining for EZH2 was performed on paraffin embedded sections. Nuclear expression of EZH2 was considered as positive and the percentage of cells staining positive was estimated. Using the Mann-Whitney U test, the expression of EZH2 was correlated with the tumor characteristics listed above. Results: The mean expression of EZH2 in HR- tumors was estimated at 74% with a median of 80% (0–90). Most of these cases (n= 61) were triple negative; 23 cases were HER-2/neu positive by established criteria. Increasing expression of EZH2 was correlated with increase in tumor size (>2 cm) and increased incidence of lymph node metastasis. No correlation was seen with tumor grade, the presence or absence of DCIS and Her2/neu expression. Race did not appear to have an impact on EZH2 expression. Conclusions: Our findings suggest that EZH2 is expressed in the majority of HR - breast cancer and is associated with aggressive breast carcinomas. EZH2 could be an important therapeutic target in this patient population. The study is ongoing to further characterize EZH2‘s role and its association with survival. No significant financial relationships to disclose.
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Pan D, Bera AK, Das SK, Bandyopadhyay S, Manna B, Bhattacharya D. Polymorphism and natural selection of antigen B1 of Echinococcus granulosus isolated from different host assemblages in India. Mol Biol Rep 2009; 37:1477-82. [PMID: 19430958 DOI: 10.1007/s11033-009-9542-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2008] [Accepted: 04/29/2009] [Indexed: 11/25/2022]
Abstract
Antigen B (AgB) is an excretory-secretory product of larval stage of Echinococcus granulosus. This antigen is abundantly secreted by larval stage of the worm. AgB is encoded by a multigene family and is suggested to be involved in evasion of host immune system. During the present study a total of 110 animal isolates of E. granulosus has been screened by mutation scan screening. A total of 14 conformers were detected on the basis of single strand banding profile of 129 bp fragment of AgB1 subunit. Analysis of sequence information of 14 conformers could cluster the isolates into two different group viz. buffalo-cattle and sheep-goat cluster. Conceptual amino acid sequence information of two clusters could be differentiated in terms of MHCII binding propensity of agretope and B-cell epitope region. This type of analysis of clustering of animal isolates on the basis of binding propensity towards different MHC antigens and B-cell linear epitope is the example of its own kind. Positive Tajima's D value indicated that, AgB1 is under balancing selection pressure which might be considered as heterogeneous selection pressure exerted by the host.
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121
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Rana V, Srinivas V, Bandyopadhyay S, Ghosh SK, Singh Y. Bilateral benign non functional struma ovarii with Pseudo-Meigs' syndrome. INDIAN J PATHOL MICR 2009; 52:94-6. [PMID: 19136795 DOI: 10.4103/0377-4929.44978] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Bilateral presentation of benign Struma ovarii is rare and has not been reported frequently in published literature. A 70-year-old postmenopausal female presented with progressive ascites, bilateral pleural effusion and elevated CA-125 levels. The contrast-enhanced computed tomography (CECT) of the abdomen and pelvis revealed a heterogenous mass in the left adnexa. These findings were suspicious for an ovarian malignancy. After surgery the diagnosis of non functional, bilateral benign Struma ovarii was made. Struma ovarii is a specialized ovarian teratoma composed predominantly of mature thyroid tissue. It is associated with pleural effusion and ascites (Pseudo-Meigs' syndrome) in 5% of cases. The combination of struma ovarii and elevated CA-125 levels has been reported infrequently. This is a rare case of bilateral benign struma ovarii associated with Pseudo-Meigs' syndrome and elevated CA-125 levels. Surgical excision of the ovarian masses induced immediate resolution of the ascites and pleural effusion and a reduction of the serum CA-125 level.
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122
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Ray S, Bandyopadhyay S, Pal S. Combining Multisource Information Through Functional-Annotation-Based Weighting: Gene Function Prediction in Yeast. IEEE Trans Biomed Eng 2009; 56:229-36. [DOI: 10.1109/tbme.2008.2005955] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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123
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Biswas TK, Bandyopadhyay S, Mukherjee B, Mukherjee B, Sengupta BR. Oral Hypoglycemic Effect of Caesalpinia bonducella. ACTA ACUST UNITED AC 2008. [DOI: 10.1076/phbi.35.4.261.13304] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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124
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Miller-Graziano CL, De A, Laudanski K, Herrmann T, Bandyopadhyay S. HSP27: an anti-inflammatory and immunomodulatory stress protein acting to dampen immune function. ACTA ACUST UNITED AC 2008; 291:196-208; discussion 208-11, 221-4. [PMID: 18575275 DOI: 10.1002/9780470754030.ch15] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The effects of HSP27 on human monocytes (MO) are predominantly antiinflammatory through preferential interleukin (IL)10 induction and by alteration of MO to immature dendritic cells (iDCs) or MO to macrophage (Mac) differentiation. Initial HSP27 inclusion in IL4+GM-CSF MO to iDC induction cultures allows Mac differentiation (CD14++, CD16+), decreases iDC (CD1a+) differentiation, and depresses DC induction of allogeneic T lymphocyte proliferation (MLR). HSP27 increased MO IL10 and M-CSF production but subsequent increased Mac differentiation isn't responsible for depressed MO to iDC differentiation and function. Mac function after IL10 induced MO to Mac differentiation is also altered by HSP27 inclusion so that Mac phagocytic activity and scavenger receptor expression (CD163) are depressed. HSP27, in addition to immature DCs, doesn't increase Mac differentiation but instead generates inhibitory DCs, which depress rather than stimulate T cell proliferation even during anti CD3+CD28 induction. Upon maturation, these HSP27-altered inhibitory DCs have increased production of the T cell and DC suppressive mediator, thrombospondin 1. HSP27's anti-inflammatory and immunodepressive effects include deranging MO differentiation to both Mac and DCs, altering their receptor expression, and inducing production of inhibitory mediators such as thrombospondin-1 as well as IL10. These data suggest HSP27 belongs to a new group of 'anti-danger signals'.
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Ghosh T, Bandyopadhyay S, Roy KK, Kar S, Lahiri AK, Maiti AK, Goswami K. Optical and structural properties of lead iodide thin films prepared by vacuum evaporation method. CRYSTAL RESEARCH AND TECHNOLOGY 2008. [DOI: 10.1002/crat.200811160] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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