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Stimmelmayr R, Rotstein DS, Sheffield G, George JC. Subcutaneous, abdominal, and thoracic encapsulated fat necrosis in bowhead whales Balaena mysticetus from Alaska, USA. DISEASES OF AQUATIC ORGANISMS 2021; 145:159-164. [PMID: 34263730 DOI: 10.3354/dao03605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We describe a case series of encapsulated fat necrosis with subcutaneous, abdominal, and thoracic locations in 7 subsistence-harvested bowhead whales Balaena mysticetus. Masses had a variably-dense fibrous capsule surrounding necrotic adipocytes and calcium salts (saponification). One animal also had prior concussive injury, pleural fibrosis, and hepatic lipoma; the other animals had no significant findings. The described condition is uncommon in bowhead whales, with 7/575 (1.2%) observed from 1996 to 2015. The exact mechanisms of development of encapsulated fat necrosis in bowhead whales remain to be determined. Encapsulated fat necrosis has been reported in other baleen whales, humans, and cows. It is usually an incidental finding during post-mortem examination that needs to be differentiated from neoplastic and inflammatory lesions, as the latter may have public health implications. Assessment of further cases in bowhead whales and other baleen whales is warranted to better understand their pathogenesis.
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McCullough JLK, Simonis AE, Sakai T, Oleson EM. Acoustic classification of false killer whales in the Hawaiian islands based on comprehensive vocal repertoire. JASA EXPRESS LETTERS 2021; 1:071201. [PMID: 36154647 DOI: 10.1121/10.0005512] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Use of underwater passive acoustic datasets for species-specific inference requires robust classification systems to identify encounters to species from characteristics of detected sounds. A suite of routines designed to efficiently detect cetacean sounds, extract features, and classify the detection to species is described using ship-based, visually verified detections of false killer whales (Pseudorca crassidens). The best-performing model included features from clicks, whistles, and burst pulses, which correctly classified 99.6% of events. This case study illustrates use of these tools to build classifiers for any group of cetacean species and assess classification confidence when visual confirmation is not available.
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Roch MA, Lindeneau S, Aurora GS, Frasier KE, Hildebrand JA, Glotin H, Baumann-Pickering S. Using context to train time-domain echolocation click detectors. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2021; 149:3301. [PMID: 34241092 DOI: 10.1121/10.0004992] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 04/26/2021] [Indexed: 06/13/2023]
Abstract
This work demonstrates the effectiveness of using humans in the loop processes for constructing large training sets for machine learning tasks. A corpus of over 57 000 toothed whale echolocation clicks was developed by using a permissive energy-based echolocation detector followed by a machine-assisted quality control process that exploits contextual cues. Subsets of these data were used to train feed forward neural networks that detected over 850 000 echolocation clicks that were validated using the same quality control process. It is shown that this network architecture performs well in a variety of contexts and is evaluated against a withheld data set that was collected nearly five years apart from the development data at a location over 600 km distant. The system was capable of finding echolocation bouts that were missed by human analysts, and the patterns of error in the classifier consist primarily of anthropogenic sources that were not included as counter-training examples. In the absence of such events, typical false positive rates are under ten events per hour even at low thresholds.
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Kowarski KA, Delarue JJY, Gaudet BJ, Martin SB. Automatic data selection for validation: A method to determine cetacean occurrence in large acoustic data sets. JASA EXPRESS LETTERS 2021; 1:051201. [PMID: 36154109 DOI: 10.1121/10.0004851] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Passive acoustic monitoring (PAM) can inform wildlife management by providing information on the distribution of cetaceans. This paper presents an automatic data selection for validation (ADSV) method to effectively identify all species acoustically present in large PAM data sets. The ADSV method involves the application of automated detectors, the automated selection of a portion of data for manual review, and the evaluation/optimization of automated detectors. Using an exemplar data set, results from the ADSV method were compared to a more intensive systematic manual review method. The two methods were found to have similar species occurrence results (hourly occurrence matching 73%-100%).
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Todd VLG, Williamson LD, Jiang J, Cox SE, Todd IB, Ruffert M. Prediction of marine mammal auditory-impact risk from Acoustic Deterrent Devices used in Scottish aquaculture. MARINE POLLUTION BULLETIN 2021; 165:112171. [PMID: 33621906 DOI: 10.1016/j.marpolbul.2021.112171] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Revised: 02/08/2021] [Accepted: 02/10/2021] [Indexed: 06/12/2023]
Abstract
Acoustic Deterrent Devices (ADDs) are used worldwide to deter pinnipeds from predating fish-aquaculture facilities. Desk-based noise-propagation modelling of six commercial ADD models, and a 'fictional' ADD was performed, the latter involving alternating source level, frequency, duty cycle, noise-exposure duration, and number of ADDs active simultaneously. Potential auditory impacts on marine mammals were explored using the Southall et al. (2019) criteria. Depending on operational characteristics, real ADDs were predicted to cause Temporary Threshold Shift (TTS) to Very High Frequency (VHF) cetaceans at ranges of 4-31 km, and a single fictional device operating at the highest outputs tested was predicted to cause TTS to VHF cetaceans at up to 32 km. Cumulative effects of 23 real fish-farm ADDs produced noise across large swathes of the Inner-Hebrides. The single variable causing greatest reduction in potential impact to marine mammals from fictional ADDs was SL.
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Danil K, Berman M, Frame E, Preti A, Fire SE, Leighfield T, Carretta J, Carter ML, Lefebvre K. Marine algal toxins and their vectors in southern California cetaceans. HARMFUL ALGAE 2021; 103:102000. [PMID: 33980440 DOI: 10.1016/j.hal.2021.102000] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 02/05/2021] [Accepted: 02/18/2021] [Indexed: 06/12/2023]
Abstract
Published baseline data on biotoxin exposure in cetaceans is sparse but critical for interpreting mortality events as harmful algal blooms increase in frequency and duration. We present the first synthesis of domoic acid (DA), saxitoxin (STX), okadaic acid (OA), and microcystin detections in the feces and urine of stranded and bycaught southern California cetaceans, over an 18 year period (2001-2018), along with corresponding stomach content data. DA was detected in 13 out of 19 cetacean species, most often in harbor porpoise (Phocoena phocoena) (81.8%, n = 22) and long-beaked common dolphins (Delphinus delphis bairdii) (74%, n = 231). Maximum DA concentrations of 324,000 ng/g in feces and 271, 967 ng/ml in urine were observed in D. d. bairdii. DA was detected more frequently and at higher concentrations in male vs. female D. d. bairdii. Higher fecal DA concentrations in D. d. bairdii were associated with a greater proportion of northern anchovy (Engraulis mordax) in the diet, indicating it may be a primary vector of DA. Fecal DA concentrations for D. d. bairdii off Point Conception were greater than those from animals sampled off Los Angeles and San Diego counties, reflecting greater primary productivity and higher Pseudo-nitzschia spp. abundance in that region and a greater abundance of E. mordax in the diet. STX was detected at low levels (fecal max = 7.5 ng/g, urine max = 17 ng/ml) in 3.6% (n = 165) of individuals from 3 out of 11 species. The occurrence of E. mordax in 100% of the 3 examined stomachs suggests this species could be a primary vector of the detected STX. OA was detected in 2.4% of tested individuals (n = 85) at a maximum fecal concentration of 422.8 ng/g. Microcystin was detected in 14.3% (n = 7) of tested individuals with a maximum liver concentration of 96.8 ppb.
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Castellana S, Biagini T, Petrizzelli F, Parca L, Panzironi N, Caputo V, Vescovi AL, Carella M, Mazza T. MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits. Nucleic Acids Res 2021; 49:D1282-D1288. [PMID: 33300029 PMCID: PMC7779045 DOI: 10.1093/nar/gkaa1032] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2020] [Revised: 10/14/2020] [Accepted: 12/08/2020] [Indexed: 12/26/2022] Open
Abstract
Numerous lines of evidence have shown that the interaction between the nuclear and mitochondrial genomes ensures the efficient functioning of the OXPHOS complexes, with substantial implications in bioenergetics, adaptation, and disease. Their interaction is a fascinating and complex trait of the eukaryotic cell that MitImpact explores with its third major release. MitImpact expands its collection of genomic, clinical, and functional annotations of all non-synonymous substitutions of the human mitochondrial genome with new information on putative Compensated Pathogenic Deviations and co-varying amino acid sites of the Respiratory Chain subunits. It further provides evidence of energetic and structural residue compensation by techniques of molecular dynamics simulation. MitImpact is freely accessible at http://mitimpact.css-mendel.it.
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Rolbiecki L, Kuczkowski T, Izdebska JN, Rokicki J, Dzido J, Pawliczka I. Anisakid nematodes in dolphins ( Cetacea: Delphinidae) from the Baltic Sea area. ANNALS OF PARASITOLOGY 2021; 67:341-345. [PMID: 34598407 DOI: 10.17420/ap6702.348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Dolphins are rarely observed in the Baltic Sea, making only sporadic appearances as a result of their migrations. The study included six specimens: four white-beaked dolphins Lagenorhynchus albirostris and two striped dolphins Stenella coeruleoalba. Their gastrointestinal tracts were found to contain the nematodes Anisakis simplex (in both species) and Contracaecum sp. (only in the white-beaked dolphins). This is the first record of Anisakidae nematodes in dolphins found in the Baltic Sea.
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López-Berenguer G, Bossi R, Eulaers I, Dietz R, Peñalver J, Schulz R, Zubrod J, Sonne C, Martínez-López E. Stranded cetaceans warn of high perfluoroalkyl substance pollution in the western Mediterranean Sea. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 267:115367. [PMID: 32866862 DOI: 10.1016/j.envpol.2020.115367] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 07/16/2020] [Accepted: 08/02/2020] [Indexed: 06/11/2023]
Abstract
Perfluoroalkyl substances (PFASs) are a class of organohalogenated compounds of environmental concern due to similar characteristics as the well-studied legacy persistent organic pollutants (POPs) that typically show environmental persistence, biomagnification and toxicity. Nevertheless, PFAS are still poorly regulated internationally and in many aspects poorly understood. Here, we studied liver and muscle concentrations in five cetacean species stranded at the southeastern coast of Spain during 2009-2018. Twelve of the fifteen targeted compounds were detected in >50% of the liver samples. Hepatic concentrations were significantly higher than those in muscle reflecting the particular toxicokinetics of these compounds. Bottlenose dolphins Tursiops truncatus showed the highest hepatic ΣPFAS (n = 5; 796.8 ± 709.0 ng g-1 ww) concentrations, followed by striped dolphin Stenella coeruleoalba (n = 29; 259.5 ± 136.2 ng g-1 ww), sperm whale Physeter macrocephalus (n = 1; 252.8 ng g-1 ww), short-beaked common dolphin Delphinus delphis (n = 2; 240.3 ± 218.6 ng g-1 ww) and Risso's dolphin Grampus griseus (n = 1; 78.7 ng g-1 ww). These interspecies differences could be partially explained by habitat preferences, although they could generally not be related to trophic position or food chain proxied by stable N (δ15N) and C (δ13C) isotope values, respectively. PFAS profiles in all species showed a similar pattern of concentration prevalence in the order PFOS>PFOSA>PFNA≈PFFUnA>PFDA. The higher number of samples available for striped dolphin allowed for evaluating their PFAS burden and profile in relation to the stranding year, stable isotope values, and biological variables including sex and length. However, we could only find links between δ15N and PFAS burdens in muscle tissue, and between stranding year and PFAS profile composition. Despite reductions in the manufacturing industry, these compounds still appear in high concentrations compared to more than two decades ago in the Mediterranean Sea and PFOS remains the dominating compound.
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Lacombe A, Pintado E, O'Byrne A, Allepuz A, Pérez-Rodriguez L, Domingo M. Ingestion of foreign materials by odontocetes along the Catalan coast: causes and consequences. DISEASES OF AQUATIC ORGANISMS 2020; 142:23-31. [PMID: 33150872 DOI: 10.3354/dao03527] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Ingestion of abnormal materials by cetaceans has been reported worldwide, but few studies have investigated the causes of foreign material ingestion. We retrospectively analysed necropsies performed between 2012 and 2019 on 88 cetaceans stranded along the coast of Catalonia, Spain, and evaluated the association of abnormal ingested materials with 2 risk factors, namely disease of the central nervous system (CNS) and maternal separation. Abnormal materials were found in the digestive tract in 19 of 88 (21.6%) cetaceans; of these, 13 (60%) had lesions in the CNS, such as morbilliviral encephalitis, neurobrucellosis or encephalomalacia, and 3 were diagnosed as having experienced maternal separation. In a logistic regression model, CNS lesions and maternal separation were identified as risk factors for ingestion of foreign material, but with wide confidence intervals, probably due to the small sample size. In contrast, abnormal ingestion was not identified in any of the 25 (28%) cetaceans whose cause of death was attributed to interaction with humans. Abnormal ingestion should be interpreted with caution, and efforts should be made at necropsy to exclude CNS diseases through pathologic and microbiologic investigations. If disease of the CNS is a significant risk factor for ingestion of marine debris by small odontocetes, results of monitoring programmes may be biased by the prevalence of CNS disease in a specific area or population.
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Fahlman A, Miedler S, Marti-Bonmati L, Ferrero Fernandez D, Muñoz Caballero P, Arenarez J, Rocho-Levine J, Robeck T, Blawas A. Cardiorespiratory coupling in cetaceans; a physiological strategy to improve gas exchange? J Exp Biol 2020; 223:jeb226365. [PMID: 32680902 DOI: 10.1242/jeb.226365] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 07/15/2020] [Indexed: 11/20/2022]
Abstract
In the current study we used transthoracic echocardiography to measure stroke volume (SV), heart rate (fH) and cardiac output (CO) in adult bottlenose dolphins (Tursiops truncatus), a male beluga whale calf [Delphinapterus leucas, body mass (Mb) range: 151-175 kg] and an adult female false killer whale (Pseudorca crassidens, estimated Mb: 500-550 kg) housed in managed care. We also recorded continuous electrocardiogram (ECG) in the beluga whale, bottlenose dolphin, false killer whale, killer whale (Orcinus orca) and pilot whale (Globicephala macrorhynchus) to evaluate cardiorespiratory coupling while breathing spontaneously under voluntary control. The results show that cetaceans have a strong respiratory sinus arrythmia (RSA), during which both fH and SV vary within the interbreath interval, making average values dependent on the breathing frequency (fR). The RSA-corrected fH was lower for all cetaceans compared with that of similarly sized terrestrial mammals breathing continuously. As compared with terrestrial mammals, the RSA-corrected SV and CO were either lower or the same for the dolphin and false killer whale, while both were elevated in the beluga whale. When plotting fR against fH for an inactive mammal, cetaceans had a greater cardiac response to changes in fR as compared with terrestrial mammals. We propose that these data indicate an important coupling between respiration and cardiac function that enhances gas exchange, and that this RSA is important to maximize gas exchange during surface intervals, similar to that reported in the elephant seal.
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Kowarski KA, Gaudet BJ, Cole AJ, Maxner EE, Turner SP, Martin SB, Johnson HD, Moloney JE. Near real-time marine mammal monitoring from gliders: Practical challenges, system development, and management implications. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2020; 148:1215. [PMID: 33003888 DOI: 10.1121/10.0001811] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Accepted: 08/09/2020] [Indexed: 06/11/2023]
Abstract
In 2017, an endangered North Atlantic right whale mortality event in the Gulf of St. Lawrence, Canada, triggered the implementation of dynamic mitigation measures that required real-time information on whale distribution. Underwater glider-based acoustic monitoring offers a possible solution for collecting near real-time information but has many practical challenges including self-noise, energy restrictions, and computing capacity, as well as limited glider-to-shore data transfer bandwidth. This paper describes the development of a near real-time baleen whale acoustic monitoring glider system and its evaluation in the Gulf of St. Lawrence in 2018. Development focused on identifying and prioritizing important acoustic events and on sending contextual information to shore for human validation. The system performance was evaluated post-retrieval, then the trial was simulated using optimized parameters. Trial simulation evaluation revealed that the validated detections of right, fin, and blue whales produced by the system were all correct; the proportion of species occurrence missed varied depending on the timeframe considered. Glider-based near real-time monitoring can be an effective and reliable technique to inform dynamic mitigation strategies for species such as the North Atlantic right whale.
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138
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Burkard R, Finneran JJ, Mulsow J, Jones R. Offset auditory brainstem response (ABR) amplitude in bottlenose dolphins. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2020; 148:1445. [PMID: 33003839 DOI: 10.1121/10.0001900] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 08/14/2020] [Indexed: 06/11/2023]
Abstract
Although commonly recorded as onset responses, the auditory brainstem response (ABR) can also be elicited at stimulus offset. The offset ABR has not been extensively investigated in marine mammals. Three normal hearing (NH) and three hearing impaired (HI) dolphins were assessed while fully submerged in sea water. Stimulus spectrum, level, rise/fall time (RFT), and plateau duration were manipulated. Onset and offset ABR amplitude were quantified as the rms voltage 1-7 ms following stimulus onset or offset, respectively. For the same stimulus conditions, onset and offset responses were often larger for NH than HI dolphins, and offset responses were typically smaller than onset responses. For the level series, offset response amplitude typically increased with increasing stimulus level, although offset responses were not 3 dB above the noisefloor for 113-kHz tonebursts. Increasing RFT decreased onset and offset response amplitude. For the 40-kHz tonebursts, a RFT of 32 μs produced a large amplitude offset ABR in NH dolphins. Offset responses for 113-kHz tonebursts were 3 dB above the noisefloor at the shortest RFTs. Offset responses were largest for 4 ms duration stimuli (likely due to overlapping onset and offset response analysis windows), but otherwise, offset responses changed little with increasing duration.
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Sonne C, Siebert U, Gonnsen K, Desforges JP, Eulaers I, Persson S, Roos A, Bäcklin BM, Kauhala K, Tange Olsen M, Harding KC, Treu G, Galatius A, Andersen-Ranberg E, Gross S, Lakemeyer J, Lehnert K, Lam SS, Peng W, Dietz R. Health effects from contaminant exposure in Baltic Sea birds and marine mammals: A review. ENVIRONMENT INTERNATIONAL 2020; 139:105725. [PMID: 32311628 DOI: 10.1016/j.envint.2020.105725] [Citation(s) in RCA: 55] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 03/29/2020] [Accepted: 04/04/2020] [Indexed: 05/21/2023]
Abstract
Here we review contaminant exposure and related health effects in six selected Baltic key species. Sentinel species included are common eider, white-tailed eagle, harbour porpoise, harbour seal, ringed seal and grey seal. The review represents the first attempt of summarizing available information and baseline data for these biomonitoring key species exposed to industrial hazardous substances focusing on anthropogenic persistent organic pollutants (POPs). There was only limited information available for white-tailed eagles and common eider while extensive information exist on POP exposure and health effects in the four marine mammal species. Here we report organ-tissue endpoints (pathologies) and multiple biomarkers used to evaluate health and exposure of key species to POPs, respectively, over the past several decades during which episodes of significant population declines have been reported. Our review shows that POP exposure affects the reproductive system and survival through immune suppression and endocrine disruption, which have led to population-level effects on seals and white-tailed eagles in the Baltic. It is notable that many legacy contaminants, which have been banned for decades, still appear to affect Baltic wildlife. With respect to common eiders, changes in food composition, quality and contaminant exposure seem to have population effects which need to be investigated further, especially during the incubation period where the birds fast. Since new industrial contaminants continuously leak into the environment, we recommend continued monitoring of them in sentinel species in the Baltic, identifying possible effects linked to climate change, and modelling of population level effects of contaminants and climate change.
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Li G, Wei H, Bi J, Ding X, Li L, Xu S, Yang G, Ren W. Insights into Dietary Switch in Cetaceans: Evidence from Molecular Evolution of Proteinases and Lipases. J Mol Evol 2020; 88:521-535. [PMID: 32458105 DOI: 10.1007/s00239-020-09952-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Accepted: 05/15/2020] [Indexed: 01/01/2023]
Abstract
Fossil evidence suggests that cetaceans evolved from artiodactylans. Thus, there was a major dietary change from herbivorous to carnivorous during their transition from a terrestrial to an aquatic environment. However, the molecular evolutionary mechanisms underlying this dietary switch have not been well investigated. Evidence of positive selection of digestive proteinases and lipases of cetaceans was detected: (1) For the four pancreatic proteinase families (carboxypeptidase, trypsin, chymotrypsin, and elastase) examined in this study, each family included only a single intact gene (e.g., CPA1, PRSS1, CTRC, and CELA3B) that had no ORF-disrupted or premature stop codons, whereas other members of each family had become pseudogenized. Further selective pressure analysis showed that three genes (PRSS1, CTRC, and CELA3B) were subjected to significant positive selection in cetaceans. (2) For digestive proteinases from the stomach, PGA was identified to be under positive selection. (3) Intense positive selection was also detected for the lipase gene PLRP2 in cetaceans. In addition, parallel /convergent amino acid substitutions between cetaceans and carnivores, two groups of mammals that have evolved similar feeding habits, were identified in 10 of the 12 functional genes. Although pseudogenization resulted in each family of pancreatic proteinases only retaining one intact gene copy in cetacean genomes, positive selection might have driven pancreatic proteinases, stomach proteinases, and lipases to adaptively evolve a stronger ability to digest a relatively higher proportion of proteins and lipids from animal foods. This study can provide some novel insights into the molecular mechanism of cetacean dietary changes during their transition from land to sea.
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Palmer R, Fleming GTA, Glaeser S, Semmler T, Flamm A, Ewers C, Kämpfer P, Budich O, Berrow S, O'Brien J, Siebert U, Collins E, Ruttledge M, Eisenberg T. Marine mammals are natural hosts of Oceanivirga salmonicida, a bacterial pathogen of Atlantic salmon. DISEASES OF AQUATIC ORGANISMS 2020; 139:161-174. [PMID: 32406871 DOI: 10.3354/dao03478] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
During 1992 and 1993, a bacterial disease occurred in a seawater Atlantic salmon Salmo salar farm, causing serious mortalities. The causative agent was subsequently named as Oceanivirga salmonicida, a member of the Leptotrichiaceae. Searches of 16S rRNA gene sequence databases have shown sequence similarities between O. salmonicida and uncultured bacterial clones from the digestive tracts of marine mammals. In the current study, oral samples were taken from stranded dolphins (common dolphin Delphinus delphis, striped dolphin Stenella coeruleoalba) and healthy harbour seals Phoca vitulina. A bacterium with growth characteristics consistent with O. salmonicida was isolated from a common dolphin. The isolate was confirmed as O. salmonicida, by comparisons to the type strain, using 16S rRNA gene, gyrB, groEL, and recA sequence analyses, average nucleotide identity analysis, and MALDI-TOF mass spectrometry. Metagenomic analysis indicated that the genus Oceanivirga represented a significant component of the oral bacterial microbiomes of the dolphins and seals. However, sequences consistent with O. salmonicida were only found in the dolphin samples. Analyses of marine mammal microbiome studies in the NCBI databases showed sequences consistent with O. salmonicida from the common dolphin, striped dolphin, bottlenose dolphin Tursiops truncatus, humpback whale Megaptera novaeangliae, and harbour seal. Sequences from marine environmental studies in the NCBI databases showed no sequences consistent with O. salmonicida. The findings suggest that several species of marine mammals are natural hosts of O. salmonicida.
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Smith HR, Zitterbart DP, Norris TF, Flau M, Ferguson EL, Jones CG, Boebel O, Moulton VD. A field comparison of marine mammal detections via visual, acoustic, and infrared (IR) imaging methods offshore Atlantic Canada. MARINE POLLUTION BULLETIN 2020; 154:111026. [PMID: 32174485 DOI: 10.1016/j.marpolbul.2020.111026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 02/24/2020] [Accepted: 02/25/2020] [Indexed: 06/10/2023]
Abstract
Impulsive sounds generated during seismic surveys have elicited behavioral responses in marine mammals and could cause hearing impairment or injury. Mitigating exposure to seismic sound often relies on real-time marine mammal detection. Detection performance is influenced by detection method, environmental conditions, and observer experience. We conducted a field comparison of real-time detections made by marine mammal observers (MMOs), a rotating infrared (IR) camera, and via passive acoustic monitoring (PAM). Data were collected from a 38 m research vessel offshore Atlantic Canada. Our results indicate that overall detection rates increase when complementary methods are used. MMOs and PAM are likely the most effective combination during high seas and precipitation. PAM and IR can be used in darkness. In good visibility, MMOs with IR or PAM should increase detections. Our results illustrate the importance of addressing false positive IR detections, matching system capabilities to sea conditions/species of interest, and employing experienced observers.
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Madhusudhana S, Murray A, Erbe C. Automatic detectors for low-frequency vocalizations of Omura's whales, Balaenoptera omurai: A performance comparison. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2020; 147:3078. [PMID: 32486822 DOI: 10.1121/10.0001108] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2020] [Accepted: 04/01/2020] [Indexed: 06/11/2023]
Abstract
Automatically detecting animal signals in soundscape recordings is of benefit to passive acoustic monitoring programs which may be undertaken for research or conservation. Numerous algorithms exist, which are typically optimized for certain situations (i.e., certain animal sound types and ambient noise conditions). Adding to the library of algorithms, this paper developed, tested, and compared three detectors for Omura's whale vocalizations (15-62 Hz; <15 s) in marine soundscape recordings which contained noise from other animals, wind, earthquakes, ships, and seismic surveys. All three detectors were based on processing of spectrographic representations. The specific methods were spectrogram cross-correlation, entropy computation, and spectral intensity "blob" tracing. The latter two were general-purpose detectors that were adapted for detection of Omura's whale vocalizations. Detector complexity and post-processing effort varied across the three detectors. Performance was assessed qualitatively using demonstrative examples, and quantitatively using Receiver-Operating Characteristics and Precision-Recall curves. While the results of quantitative assessment were dominated by the spectrogram cross-correlation method, qualitative assessment showed that all three detectors offered promising performance.
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Martin SB, Lucke K, Barclay DR. Techniques for distinguishing between impulsive and non-impulsive sound in the context of regulating sound exposure for marine mammals. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2020; 147:2159. [PMID: 32359266 DOI: 10.1121/10.0000971] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Accepted: 03/11/2020] [Indexed: 06/11/2023]
Abstract
Regulations designed to mitigate the effects of man-made sounds on marine mammal hearing specify maximum daily sound exposure levels. The limits are lower for impulsive than non-impulsive sounds. The regulations do not indicate how to quantify impulsiveness; instead sounds are grouped by properties at the source. To address this gap, three metrics of impulsiveness (kurtosis, crest factor, and the Harris impulse factor) were compared using values from random noise and real-world ocean sounds. Kurtosis is recommended for quantifying impulsiveness. Kurtosis greater than 40 indicates a sound is fully impulsive. Only sounds above the effective quiet threshold (EQT) are considered intense enough to accumulate over time and cause hearing injury. A functional definition for EQT is proposed: the auditory frequency-weighted sound pressure level (SPL) that could accumulate to cause temporary threshold shift from non-impulsive sound as described in Southall, Finneran, Reichmuth, Nachtigall, Ketten, Bowles, Ellison, Nowacek, and Tyack [(2019). Aquat. Mamm. 45, 125-232]. It is known that impulsive sounds change to non-impulsive as these sounds propagate. This paper shows that this is not relevant for assessing hearing injury because sounds retain impulsive character when SPLs are above EQT. Sounds from vessels are normally considered non-impulsive; however, 66% of vessels analyzed were impulsive when weighted for very-high frequency mammal hearing.
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Tulloch V, Grech A, Jonsen I, Pirotta V, Harcourt R. Cost-effective mitigation strategies to reduce bycatch threats to cetaceans identified using return-on-investment analysis. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2020; 34:168-179. [PMID: 31538354 DOI: 10.1111/cobi.13418] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2019] [Revised: 05/13/2019] [Accepted: 06/17/2019] [Indexed: 06/10/2023]
Abstract
Globally, fisheries bycatch threatens the survival of many whale and dolphin species. Strategies for reducing bycatch can be expensive. Management is inclined to prioritize investment in actions that are inexpensive, but these may not be the most effective. We used an economic tool, return-on-investment, to identify cost-effective measures to reduce cetacean bycatch in the trawl, net, and line fisheries of Australia. We examined 3 management actions: spatial closures, acoustic deterrents, and gear modifications. We compared an approach for which the primary goal was to reduce the cost of bycatch reduction to fisheries with an approach that aims solely to protect whale and dolphin species. Based on cost-effectiveness and at a fine spatial resolution, we identified the management strategies across Australia that most effectively abated dolphin and whale bycatch. Although trawl-net modifications were the cheapest strategy overall, there were many locations where spatial closures were the most cost-effective solution, despite their high costs to fisheries, due to their effectiveness in reducing all fisheries interactions. Our method can be used to delineate strategies to reduce bycatch threats to mobile marine species across diverse fisheries at relevant spatial scales to improve conservation outcomes.
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Câmara N, Sierra E, Fernández A, Arbelo M, Andrada M, Monteros AEDL, Herráez P. Increased Plasma Cardiac Troponin I in Live-Stranded Cetaceans: Correlation with Pathological Findings of Acute Cardiac Injury. Sci Rep 2020; 10:1555. [PMID: 32005888 PMCID: PMC6994679 DOI: 10.1038/s41598-020-58497-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Accepted: 01/13/2020] [Indexed: 11/08/2022] Open
Abstract
Capture myopathy (CM), is a syndrome that occurs as the result of the stress during and after capture, handling, restraint, and transport of wild animals. Although CM has been described for many species of cetaceans, characterization of the acute cardiac injury - an important component of this syndrome - are still scarce. In this study, we firstly estimated a normal range for cardiac troponin I (cTnI) on cetaceans. Here, through biochemical analysis (especially of cTnI) and histopathological, histochemical, and immunohistochemical correlations with decreased troponin immunolabelling, we studied the cardiac injury in live-stranded cetaceans. Nine cetaceans which stranded alive on the Canary Islands (January 2016 - June 2019) were included in this study. Sampled individuals presented elevated values of plasma cTnI, which were correlated to histopathological lesions comprised of vascular changes and acute degenerative lesions. Immunohistochemically, injured cardiomyocytes showed a decreased intrafibrillar troponin immunoreaction. This is the first attempt to establish a normal baseline range for cTnI in cetaceans, and the first study comparing plasma biomarkers values with histopathological and immunohistochemical findings. This approach allowed us to demonstrate the degree of cardiac damage as a result of injury, consistent with ischemia-reperfusion lesions. The knowledge gained here could improve decision-making procedures during stressful situations, mainly in live-strandings, handling, and rehabilitation, thereby reducing the mortality of cetaceans.
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Mazzoldi C, Bearzi G, Brito C, Carvalho I, Desiderà E, Endrizzi L, Freitas L, Giacomello E, Giovos I, Guidetti P, Ressurreição A, Tull M, MacDiarmid A. From sea monsters to charismatic megafauna: Changes in perception and use of large marine animals. PLoS One 2020; 14:e0226810. [PMID: 31891944 PMCID: PMC6938407 DOI: 10.1371/journal.pone.0226810] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022] Open
Abstract
Marine megafauna has always elicited contrasting feelings. In the past, large marine animals were often depicted as fantastic mythological creatures and dangerous monsters, while also arousing human curiosity. Marine megafauna has been a valuable resource to exploit, leading to the collapse of populations and local extinctions. In addition, some species have been perceived as competitors of fishers for marine resources and were often actively culled. Since the 1970s, there has been a change in the perception and use of megafauna. The growth of marine tourism, increasingly oriented towards the observation of wildlife, has driven a shift from extractive to non-extractive use, supporting the conservation of at least some species of marine megafauna. In this paper, we review and compare the changes in the perception and use of three megafaunal groups, cetaceans, elasmobranchs and groupers, with a special focus on European cultures. We highlight the main drivers and the timing of these changes, compare different taxonomic groups and species, and highlight the implications for management and conservation. One of the main drivers of the shift in perception, shared by all the three groups of megafauna, has been a general increase in curiosity towards wildlife, stimulated inter alia by documentaries (from the early 1970s onwards), and also promoted by easy access to scuba diving. At the same time, environmental campaigns have been developed to raise public awareness regarding marine wildlife, especially cetaceans, a process greatly facilitated by the rise of Internet and the World Wide Web. Currently, all the three groups (cetaceans, elasmobranchs and groupers) may represent valuable resources for ecotourism. Strikingly, the economic value of live specimens may exceed their value for human consumption. A further change in perception involving all the three groups is related to a growing understanding and appreciation of their key ecological role. The shift from extractive to non-extractive use has the potential for promoting species conservation and local economic growth. However, the change in use may not benefit the original stakeholders (e.g. fishers or whalers) and there may therefore be a case for providing compensation for disadvantaged stakeholders. Moreover, it is increasingly clear that even non-extractive use may have a negative impact on marine megafauna, therefore regulations are needed.
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Gingerich PD, Antar MSM, Zalmout IS. Aegicetus gehennae, a new late Eocene protocetid ( Cetacea, Archaeoceti) from Wadi Al Hitan, Egypt, and the transition to tail-powered swimming in whales. PLoS One 2019; 14:e0225391. [PMID: 31825956 PMCID: PMC6905522 DOI: 10.1371/journal.pone.0225391] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Accepted: 10/30/2019] [Indexed: 11/19/2022] Open
Abstract
Aegicetus gehennae is a new African protocetid whale based on a partial skull with much of an associated postcranial skeleton. The type specimen, Egyptian Geological Museum, Cairo [CGM] 60584, was found near the base of the early-Priabonian-age (earliest late Eocene) Gehannam Formation of the Wadi Al Hitan World Heritage Site in Egypt. The cranium is distinctive in having ventrally-deflected exoccipitals. The vertebral column is complete from cervical C1 through caudal Ca9, with a vertebral formula of 7:15:4:4:9+, representing, respectively, the number of cervical, thoracic, lumbar, sacral, and caudal vertebrae. CGM 60584 has two more rib-bearing thoracic vertebrae than other known protocetids, and two fewer lumbars. Sacral centra are unfused, and there is no defined auricular surface on the ilium. Thus there was no weight-bearing sacroiliac joint. The sternum is distinctive in being exceptionally broad and flat. The body weight of CGM 60584, a putative male, is estimated to have been about 890 kg in life. Long bones of the fore and hind limbs are shorter than expected for a protocetid of this size. Bones of the manus are similar in length and more robust compared to those of the pes. A log vertebral length profile for CGM 60584 parallels that of middle Eocene Maiacetus inuus through the anterior and middle thorax, but more posterior vertebrae are proportionally longer. Vertebral elongation, loss of a sacroiliac articulation, and hind limb reduction indicate that Aegicetus gehennae was more fully aquatic and less specialized as a foot-powered swimmer than earlier protocetids. It is doubtful that A. gehennae had a tail fluke, and the caudal flattening known for basilosaurids is shorter relative to vertebral column length than flattening associated with a fluke in any modern whale. Late protocetids and basilosaurids had relatively long skeletons, longer than those known earlier and later, and the middle-to-late Eocene transition from foot-powered to tail-powered swimming seemingly involved some form of mid-body-and-tail undulation.
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Hastie G, Merchant ND, Götz T, Russell DJF, Thompson P, Janik VM. Effects of impulsive noise on marine mammals: investigating range-dependent risk. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2019; 29:e01906. [PMID: 30986328 DOI: 10.1002/eap.1906] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Revised: 01/09/2019] [Accepted: 02/19/2019] [Indexed: 06/09/2023]
Abstract
Concerns exist about the impacts of underwater noise on marine mammals. These include auditory damage, which is a significant risk for marine mammals exposed to impulsive sounds such as explosions, pile-driving, and seismic air guns. Currently, impact assessments use different risk criteria for impulsive and non-impulsive sounds (e.g., ships, drilling). However, as impulsive sounds dissipate through the environment, they potentially lose hazardous features (e.g., sudden onset) and become non-impulsive at some distance from the source. Despite management implications, a lack of data on range-dependent characteristics currently limits their inclusion in impact assessments. We address this using acoustic recordings of seismic air guns and pile-driving to quantify range dependency in impulsive characteristics using four criteria: (1) rise time < 25 ms; (2) quotient of peak pressure and pulse duration > 5,000 Pa/s; (3) duration < 1 s; (4) crest factor > 15 dB. We demonstrate that some characteristics changed markedly within ranges of ~10 km, and that the mean probability of exceeding criteria 1 and 2 was <0.5 at ranges >3.5 km. In contrast, the mean probability of exceeding criteria 3 remained >0.5 up to ~37.0 km, and the mean probability of exceeding criteria 4 remained <0.5 throughout the range. These results suggest that a proportion of the recorded signals should be defined as impulsive based on each of the criteria, and that some of the criteria change markedly as a result of propagation. However, the impulsive nature of a sound is likely to be a complex interaction of all these criteria, and many other unrelated parameters such as duty cycle, recovery periods, and sound levels will also strongly affect the risk of hearing damage. We recommend future auditory damage studies and impact assessments explicitly consider the ranges at which sounds may lose some of their potentially hazardous characteristics.
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Whitehead H, Laland KN, Rendell L, Thorogood R, Whiten A. The reach of gene-culture coevolution in animals. Nat Commun 2019; 10:2405. [PMID: 31160560 PMCID: PMC6546714 DOI: 10.1038/s41467-019-10293-y] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2018] [Accepted: 05/02/2019] [Indexed: 12/26/2022] Open
Abstract
Culture (behaviour based on socially transmitted information) is present in diverse animal species, yet how it interacts with genetic evolution remains largely unexplored. Here, we review the evidence for gene-culture coevolution in animals, especially birds, cetaceans and primates. We describe how culture can relax or intensify selection under different circumstances, create new selection pressures by changing ecology or behaviour, and favour adaptations, including in other species. Finally, we illustrate how, through culturally mediated migration and assortative mating, culture can shape population genetic structure and diversity. This evidence suggests strongly that animal culture plays an important evolutionary role, and we encourage explicit analyses of gene-culture coevolution in nature.
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