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Moreira TFM, Pessoa LGA, Seixas FAV, Ineu RP, Gonçalves OH, Leimann FV, Ribeiro RP. Chemometric evaluation of enzymatic hydrolysis in the production of fish protein hydrolysates with acetylcholinesterase inhibitory activity. Food Chem 2021; 367:130728. [PMID: 34380107 DOI: 10.1016/j.foodchem.2021.130728] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 06/16/2021] [Accepted: 07/27/2021] [Indexed: 11/04/2022]
Abstract
Fish protein hydrolysates (FPH) obtained from industrial processing residues are sources of bioactive peptides. The enzymatic hydrolysis process is essential in obtaining specific bioactivities such as inhibition of the enzyme acetylcholinesterase (AChE). In this study the effect of different hydrolysis conditions on the properties of FPH to inhibit the enzyme acetylcholinesterase. A chemometric evaluation, based on a central composite rotatable design and principal component analysis, was applied to select hydrolysis conditions with best yield, degree of hydrolysis and acetylcholinesterase inhibition. Experimental design results for AChE inhibition were between 10.51 and 40.45% (20, 30 and 50 mg.mL-1 of FPH), and three hydrolysis conditions were selected based on PCA evaluation. The amino acids profile, FTIR and AChE inhibition kinetics were evaluated. Results showed a mixed type of inhibition behavior and, the docking molecular analyzes suggest that the inhibition AChE occurred due to the basic amino acids, mainly by arginine.
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Rogers A, Dietz KJ, Gifford ML, Lunn JE. The importance of independent replication of treatments in plant science. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:5270-5274. [PMID: 34320198 DOI: 10.1093/jxb/erab268] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
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Computer-assisted UHPLC method development and optimization for the determination of albendazole and its related substances. J Pharm Biomed Anal 2021; 203:114203. [PMID: 34153936 DOI: 10.1016/j.jpba.2021.114203] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 05/31/2021] [Accepted: 06/08/2021] [Indexed: 11/20/2022]
Abstract
Computer-aided ultrahigh performance liquid chromatographic (UHPLC) method development and optimization was undertaken in order to replace an underperforming European Pharmacopoeia method for the determination of albendazole and its related substances. In the preliminary screening, a temperature-gradient time bidimensional model was chosen to aid selection of the proper stationary phase. Hereinafter temperature-gradient time-ternary composition and temperature-gradient time-pH tridimensional models were applied for the optimization of critical method parameters. The simulation and in silico robustness testing were realized using DryLab modeling software. The final method was validated for quantification of impurities and assay of the active substance according to the current ICH guidance. The validated methods were tested on a real, commercial tablet formulation. The experimental design-based and software-assisted method development proved to be a fast and reliable way of replacing a method with inadequate selectivity and long runtime with a robust UHPLC-based method, which offers baseline separation for all monitored impurities in 10 min. Results confirm that software-based chromatographic modelling can not only speed up the analytical method development process, but also improve the reliability of the developed method.
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Fejős I, Tóth G, Várnai B, Szabó ZI, Köteles I, Malanga M, Béni S. Enantioseparation of solriamfetol and its major impurity phenylalaninol by capillary electrophoresis using sulfated gamma cyclodextrin. Electrophoresis 2021; 42:1818-1825. [PMID: 34109644 DOI: 10.1002/elps.202100076] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Revised: 06/01/2021] [Accepted: 06/04/2021] [Indexed: 11/11/2022]
Abstract
R-solriamfetol is a recently approved drug used for the treatment of excessive sleepiness associated with narcolepsy and sleep apnea. Herein, a capillary electrophoretic method was developed, enabling the simultaneous analysis of the API and its S-enantiomer in addition to the enantiomers of its major impurity phenylalaninol. Twenty-nine different cyclodextrins (CDs), including native, neutral, and charged ones were screened as potential chiral selectors, and the best results were obtained with sulfated CDs. Randomly sulfated-β-CD exhibited outstanding enantioresolution, the peaks of phenylalaninol enantiomers inserted between the two peaks of solriamfetol enantiomers, while sulfated-γ-CD (S-γ-CD) showed remarkable resolution values in a much shorter analysis time with the optimal enantiomer migration order. Among the single isomer sulfated CD derivatives, substituent dependent enantiomer migration order reversal could also be observed in the case of heptakis(6-O-sulfo)-β-CD (HS-β-CD) or heptakis(2,3-O-dimethyl-6-O-sulfo)-β-CD (HDMS-β-CD) with R-,S-solriamfetol, and heptakis(2,3-O-diacetyl-6-O-sulfo)-β-CD (HDAS-β-CD) resulting S-,R-solriamfetol migration order. The sulfated-γ-CD system was chosen for method optimization applying orthogonal experimental design. The optimized method (45 mM Tris-acetate buffer, pH 4.5, 4 mM S-γ-CD, 21°C, +19.5 kV) was capable for the baseline separation of solriamfetol and phenylalaninol enantiomers within 7 min. The optimized method was validated according to the ICH guidelines and successfully applied for the analysis of pharmaceutical preparation (Sunosi® 75 mg tablet), thus it may serve as a routine procedure for the laboratories of regulatory authorities as well as in Pharmacopoeias.
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Response adaptive designs for Phase II trials with binary endpoint based on context-dependent information measures. Comput Stat Data Anal 2021; 158:107187. [PMID: 34083846 PMCID: PMC7985674 DOI: 10.1016/j.csda.2021.107187] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In many rare disease Phase II clinical trials, two objectives are of interest to an investigator: maximising the statistical power and maximising the number of patients responding to the treatment. These two objectives are competing, therefore, clinical trial designs offering a balance between them are needed. Recently, it was argued that response-adaptive designs such as families of multi-arm bandit (MAB) methods could provide the means for achieving this balance. Furthermore, response-adaptive designs based on a concept of context-dependent (weighted) information criteria were recently proposed with a focus on Shannon's differential entropy. The information-theoretic designs based on the weighted Renyi, Tsallis and Fisher informations are also proposed. Due to built-in parameters of these novel designs, the balance between the statistical power and the number of patients that respond to the treatment can be tuned explicitly. The asymptotic properties of these measures are studied in order to construct intuitive criteria for arm selection. A comprehensive simulation study shows that using the exact criteria over asymptotic ones or using information measures with more parameters, namely Renyi and Tsallis entropies, brings no sufficient gain in terms of the power or proportion of patients allocated to superior treatments. The proposed designs based on information-theoretical criteria are compared to several alternative approaches. For example, via tuning of the built-in parameter, one can find designs with power comparable to the fixed equal randomisation's but a greater number of patients responded in the trials.
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Abstract
Voluntary actions and causally linked sensory stimuli are perceived to be shifted towards each other in time. This so-called temporal binding is commonly assessed in paradigms using the Libet Clock. In such experiments, participants have to estimate the timing of actions performed or ensuing sensory stimuli (usually tones) by means of a rotating clock hand presented on a screen. The aforementioned task setup is however ill-suited for many conceivable setups, especially when they involve visual effects. To address this shortcoming, the line of research presented here establishes an alternative measure for temporal binding by using a sequence of timed sounds. This method uses an auditory timer, a sequence of letters presented during task execution, which serve as anchors for temporal judgments. In four experiments, we manipulated four design factors of this auditory timer, namely interval length, interval filling, sequence predictability, and sequence length, to determine the most effective and economic method for measuring temporal binding with an auditory timer.
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Pasquini B, Gotti R, Villar-Navarro M, Douša M, Renai L, Del Bubba M, Orlandini S, Furlanetto S. Analytical quality by design in the development of a solvent-modified micellar electrokinetic chromatography method for the determination of sitagliptin and its related compounds. J Pharm Biomed Anal 2021; 202:114163. [PMID: 34052552 DOI: 10.1016/j.jpba.2021.114163] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 05/19/2021] [Accepted: 05/20/2021] [Indexed: 01/18/2023]
Abstract
A solvent-modified micellar electrokinetic chromatography method was developed following the Quality by Design approach for the simultaneous determination of sitagliptin (SIT), an oral antihyperglycemic drug, and its main impurities derived from the synthesis process. The separation system was identified in the scouting phase and was made by sodium dodecyl sulphate (SDS) micelles with the addition of n-butanol and methanol. The knowledge space was investigated through an asymmetric screening matrix, taking into consideration eight critical method parameters (CMPs) involving the composition of the background electrolyte in terms of buffer concentration and pH, the concentration of surfactants and organic modifiers, and voltage. The critical method attributes (CMAs) were identified as analysis time and the distance between the tail of the electroosmotic flow system peak and the front edge of impurity I1 (sitagliptin triazole hydrochloride). A Box-Behnken Design was used in response surface methodology for calculating the quadratic models relating the CMPs to the CMAs. From the models it was possible to compute the method operable design region (MODR) through Monte-Carlo simulations. The MODR was identified in the probability maps as the multidimensional zone where the risk of failure to achieve the desired values for the CMAs was lower than 10 %. The experimental conditions corresponding to the working point, with the MODR interval, were the following: background electrolyte, 14 (10-18) mM borate buffer pH 9.20, 100 mM SDS, 13.6 (11.1-16.0) %v/v n-butanol, 6.7 (4.5-8.8) %v/v methanol; voltage and temperature were set to 28 kV and 22 °C, respectively. The developed CE method was validated in accordance with International Council for Harmonisation guidelines and was applied to the analysis of SIT tablets. The routine analysis for the quality control of the pharmaceutical product could be conducted in about 11 min.
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158
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Behbahani ES, Dashtian K, Ghaedi M. Fe 3O 4-FeMoS 4: Promise magnetite LDH-based adsorbent for simultaneous removal of Pb (II), Cd (II), and Cu (II) heavy metal ions. JOURNAL OF HAZARDOUS MATERIALS 2021; 410:124560. [PMID: 33243639 DOI: 10.1016/j.jhazmat.2020.124560] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 11/10/2020] [Accepted: 11/10/2020] [Indexed: 05/22/2023]
Abstract
There have always been numerous challenges to designing a cost-effectiveness, reusable and robust adsorbents for simultaneous heavy metal ion remediations from wastewaters. Herein, a novel kind of nanocomposite relying on the synergic impact of magnetic Fe3O4, FeMoS4-2, and magnesium-aluminum layered double hydroxide (MgAl-LDH) using loading the FeMoS4-2 on protonated Fe3O4 and adhered to the surface of Mg/Al-LDH (Fe3O4/FeMoS4/MgAl-LDH). The nanocage structures adsorbent was characterized via FT-IR, XRD, FE-SEM, EDX, and VSM techniques and demonstrated having an efficient adsorption capability to common cationic pollutants (Pb (II), Cd (II) and Cu (II) by batch experiments. Disparate chief parameters affecting adsorption performance, including Fe3O4/FeMoS4/MgAl-LDH mass, metal ion concentrations, solution pH, and contact time were considered and optimized through central composite design (CCD) in detail. Its supreme adsorption efficiency toward Pb (II), Cd (II), and Cu (II) accounted for 190.75, 140.50, and 110.25 mg g-1, respectively, which acquired by the Langmuir model under the parameter set at 60 min contact time, solution pH at 5, 0.03 g the Fe3O4/FeMoS4/MgAl-LDH and metal ion concentrations ranging from 10 to 300 mg L-1. Such enhancement stemmed from the coordinated complexes in the LDH interlayer region and electrostatic attraction between Fe3O4/FeMoS4/MgAl-LDH and metal ions. Furthermore, the adsorption conducts were more consistent with the pseudo-second-order model and the Langmuir isotherm model, respectively. Likewise, the features such as the superior regeneration and reusability allow the Fe3O4/FeMoS4/MgAl-LDH nanocomposite to constitute as one of the promising materials for heavy metals remediation in wastewater.
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Important Issues in Planning a Proteomics Experiment: Statistical Considerations of Quantitative Proteomic Data. Methods Mol Biol 2021; 2228:1-20. [PMID: 33950479 DOI: 10.1007/978-1-0716-1024-4_1] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/15/2023]
Abstract
Mass spectrometry is frequently used in quantitative proteomics to detect differentially regulated proteins. A very important but unfortunately oftentimes neglected part in detecting differential proteins is the statistical analysis. Data from proteomics experiments are usually high-dimensional and hence require profound statistical methods. It is especially important to already correctly design a proteomic experiment before it is conducted in the laboratory. Only this can ensure that the statistical analysis is capable of detecting truly differential proteins afterward. This chapter thus covers aspects of both statistical planning as well as the actual analysis of quantitative proteomic experiments.
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Modesto HR, Lemos SG, Dos Santos MS, Komatsu JS, Gonçalves M, Carvalho WA, Carrilho ENVM, Labuto G. Activated carbon production from industrial yeast residue to boost up circular bioeconomy. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:24694-24705. [PMID: 32803592 DOI: 10.1007/s11356-020-10458-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Accepted: 08/10/2020] [Indexed: 05/23/2023]
Abstract
This work aims to obtain activated carbon (AC) from yeast residue to boost up bioeconomy. In this way, carbon was prepared from yeast biomass produced by the ethanol industry and after beta-glucan extraction. Carbon was activated with CO2, water vapor, and a combination of both using an experimental design. The best conditions to produce AC were activation with CO2 for 30 min at 850 °C and CO2 flow of 0.09 L/min, set by experimental design and desirability function to optimize the yield, surface area, and microporosity. Thus, for physical activation with water vapor employing the optimized conditions, it was possible to achieve a yield of 56.6% (m/m) for AC with 1144 m2/g of surface area and mean micropore volume of 0.53 cm3/g. The maximum AC surface area reached 1616 ± 567 m2/g with a yield of 21 ± 1%. The prepared ACs were characterized by elemental analysis, X-ray diffractometry, infrared spectroscopy, thermogravimetry analysis, pHPZC, and potentiometric titration to determine the main functional groups of sorption sites. The carbon obtained from the desirability condition was used to remove dipyrone from synthetic aqueous effluent with an experimental sorption capacity of 88 ± 4 mg/g, being the phenomenon described by the Freundlich isotherm model.
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161
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Farrar BG, Voudouris K, Clayton NS. Replications, Comparisons, Sampling and the Problem of Representativeness in Animal Cognition Research. ANIMAL BEHAVIOR AND COGNITION 2021; 8:273-295. [PMID: 34046521 PMCID: PMC7610843 DOI: 10.26451/abc.08.02.14.2021] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Animal cognition research often involves small and idiosyncratic samples. This can constrain the generalizability and replicability of a study's results and prevent meaningful comparisons between samples. However, there is little consensus about what makes a strong replication or comparison in animal research. We apply a resampling definition of replication to answer these questions in Part 1 of this article, and, in Part 2, we focus on the problem of representativeness in animal research. Through a case study and a simulation study, we highlight how and when representativeness may be an issue in animal behavior and cognition research and show how the representativeness problems can be viewed through the lenses of, i) replicability, ii) generalizability and external validity, iii) pseudoreplication and, iv) theory testing. Next, we discuss when and how researchers can improve their ability to learn from small sample research through, i) increasing heterogeneity in experimental design, ii) increasing homogeneity in experimental design, and, iii) statistically modeling variation. Finally, we describe how the strongest solutions will vary depending on the goals and resources of individual research programs and discuss some barriers towards implementing them.
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Taşpınar H, Elik A, Kaya S, Altunay N. Optimization of green and rapid analytical procedure for the extraction of patulin in fruit juice and dried fruit samples by air-assisted natural deep eutectic solvent-based solidified homogeneous liquid phase microextraction using experimental design and computational chemistry approach. Food Chem 2021; 358:129817. [PMID: 33940302 DOI: 10.1016/j.foodchem.2021.129817] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 03/28/2021] [Accepted: 03/29/2021] [Indexed: 01/05/2023]
Abstract
In this paper, a green and inexpensive air-assisted natural deep eutectic solvent-based solidified homogeneous liquid phase microextraction procedure was optimized for extraction of patulin in fruit juice and dried fruit samples using experimental design prior to its spectrophotometric determination. Four different natural deep eutectic solvent were prepared and applied to ensure efficient, and selective extraction of patulin. The significant variables including Zn(II) amount, cooling time, pH and amount of natural deep eutectic solvent were optimized by using central composite design. Under optimized conditions, working range was 10-750 μg L-1 with 0.9996 of correlation coefficient. Detection limit and preconcentration factor were 3.5 μg L-1 and 150, respectively. The repeatability and reproducibility precision were in the range of 3.2-4.6% and 4.3-5.6% respectively. Recoveries ranging from 94% to 104% proved the accuracy of the method. The optimized method was successfully applied to the extraction and identification of patulin in the selected samples.
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163
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[Evaluation of competences in scientific writing after two different types of training courses: SCRIU-B study protocol]. GACETA SANITARIA 2021; 36:188-192. [PMID: 33865630 DOI: 10.1016/j.gaceta.2020.12.036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 12/11/2020] [Indexed: 11/23/2022]
Abstract
Scientific writing is one of the competences required and requested by health professionals. There are several course formats designed for acquiring these competences, although the improvement after taking part in these courses is not always demonstrated. Through an open and non-randomized experimental design, the SCRIU-B study aims to evaluate the acquisition of competencies in scientific writing after specific training courses (face-to-face and online) as well as the satisfaction of the participants with these courses. A control group with participants from other training workshops not related to scientific writing is included. Through different questionnaires about knowledge, attitudes and skills we will evaluate and compare the improvement of their scientific writing skills. The results of the study will allow us to assess the usefulness of these courses and improve their format and implementation.
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Lowes HM, Snihur KN, Alessi DS, Clements JC, Blewett TA. Group versus individual exposure: Do methodological decisions in aquatic toxicology alter experimental results? THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 764:144288. [PMID: 33385645 DOI: 10.1016/j.scitotenv.2020.144288] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Revised: 11/23/2020] [Accepted: 11/29/2020] [Indexed: 06/12/2023]
Abstract
In aquatic toxicology, methods that are chosen for exposures have profound consequences on experimental outcomes and thus can skew policy initiatives. For example, as compared to single-organism exposures, toxicity test results of group exposures may be impacted by confounding factors such as social interactions between animals or individual variation in accumulation rates. To test for differences in organismal response between group and individual toxicological exposures, we exposed Daphnia magna to copper and subsequently compared the toxicity (median lethal concentration or LC50) between groups and individuals. Results suggested that water chemistry had a larger effect on experimental outcomes than the number of animals exposed in the same tank. Methodological decisions with respect to replication type can affect toxicity tests, and LC50s calculated using different exposure types (such as group and individual exposures) may not be comparable.
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Temel M, Johnson AA, Havenith G, Arnold JT, West AM, Lloyd AB. An examination of five theoretical foundations associated with localized thermosensory testing. Eur J Appl Physiol 2021; 121:1943-1954. [PMID: 33765169 PMCID: PMC8192324 DOI: 10.1007/s00421-021-04670-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Accepted: 03/16/2021] [Indexed: 11/05/2022]
Abstract
Purpose To assess five theoretical foundations underlying thermosensory testing using local thermal stimuli. Methods Thermal sensation, discomfort and the confidence of thermal sensation scores were measured in 9 female and 8 male volunteers in response to 17 physical contact temperature stimuli, ranging between 18–42 °C. These were applied to their dorsal forearm and lateral torso, across two sessions. Results Thermal sensation to physical temperature relationships followed a positive linear and sigmoidal fit at both forearm (r2 = 0.91/r2 = 0.91, respectively) and lateral torso (r2 = 0.90/ r2 = 0.91, respectively). Thermal discomfort to physical temperature relationships followed second and third-order fits at both forearm (r2 = 0.33/r2 = 0.34, respectively) and lateral torso (r2 = 0.38/r2 = 0.39, respectively) test sites. There were no sex-related or regional site differences in thermal sensation and discomfort across a wide range of physical contact temperatures. The median confidence of an individual’s thermal sensation rating was measured at 86%. Conclusion The relation between thermal sensation and physical contact temperature was well described by both linear and sigmoidal models, i.e., the distance between the thermal sensation anchors is close to equal in terms of physical temperatures changes for the range studied. Participants rated similar thermal discomfort level in both cold and hot thermal stimuli for a given increase or decrease in physical contact temperature or thermal sensation. The confidence of thermal sensation rating did not depend on physical contact temperature.
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Ahamad MG, Tanin F. Mental model-based repeated multifaceted (MRM) intervention design: a conceptual framework for improving preventive health behaviors and outcomes. BMC Res Notes 2021; 14:103. [PMID: 33741049 PMCID: PMC7977269 DOI: 10.1186/s13104-021-05516-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Accepted: 03/05/2021] [Indexed: 11/24/2022] Open
Abstract
Objective Field interventions employed to improve preventive health behaviors and outcomes generally use well-established approaches; however, recent studies have reported that health education and promotional interventions have little to no impact on health behaviors, especially in low- and middle-income countries. We aimed to develop a conceptual framework to improve intervention designs that would internalize these concerns and limitations. Results We identified three major experimental design- and implementation-related concerns associated with mental models, including the balance between the treatment and control groups, the treatment group’s willingness to adopt suggested behaviors, and the type, length, frequency, intensity, and sequence of treatments. To minimize the influence of these aspects of an experimental design, we proposed a mental model-based repeated multifaceted (MRM) intervention design framework, which represents a supportive intervention design for the improvement of health education and promotional programs. The framework offers a step-by-step method that can be used for experimental and treatment design and outcome analysis, and that addresses potential implementation challenges. Supplementary Information The online version contains supplementary material available at 10.1186/s13104-021-05516-9.
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Megahed SM, Habib AA, Hammad SF, Kamal AH. Experimental design approach for development of spectrofluorimetric method for determination of favipiravir; a potential therapeutic agent against COVID-19 virus: Application to spiked human plasma. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 249:119241. [PMID: 33333412 PMCID: PMC7834856 DOI: 10.1016/j.saa.2020.119241] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 11/10/2020] [Accepted: 11/14/2020] [Indexed: 05/24/2023]
Abstract
The present work describes development of rapid, robust, sensitive and green spectrofluorimetric method for determination of favipiravir (FAV). Different factors affecting fluorescence were carefully studied and Box Behnken Design was applied to optimize experimental parameters. The proposed method is based on measuring native fluorescence of FAV in 0.2 M borate buffer (pH 8.0) at 432 nm after excitation at 361 nm. There was a linear relationship between FAV concentration and relative fluorescence intensity over the range 40-280 ng/mL with limit of detection of 9.44 ng/mL and quantitation limit of 28.60 ng/mL. The method was successfully implemented for determination of FAV in its pharmaceutical formulation with mean % recovery of 99.26 ± 0.87. Moreover, the high sensitivity of the method allowed determination of FAV in spiked human plasma over a range of 48-192 ng/mL. The proposed spectrofluorimetric method was proved to be eco-friendly according to analytical eco-scale.
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Vieira GAL, Cabral L, Otero IVR, Ferro M, Faria AUD, Oliveira VMD, Bacci M, Sette LD. Marine associated microbial consortium applied to RBBR textile dye detoxification and decolorization: Combined approach and metatranscriptomic analysis. CHEMOSPHERE 2021; 267:129190. [PMID: 33316621 DOI: 10.1016/j.chemosphere.2020.129190] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Revised: 11/17/2020] [Accepted: 11/30/2020] [Indexed: 06/12/2023]
Abstract
The combination of different microorganisms and their metabolisms makes the use of microbial consortia in bioremediation processes a useful approach. In this sense, this study aimed at structuring and selecting a marine microbial consortium for Remazol Brilliant Blue R (RBBR) detoxification and decolorization. Experimental design was applied to improve the culture conditions, and metatranscriptomic analysis to understand the enzymatic pathways. A promising consortium composed of Mucor racemosus CBMAI 847, Marasmiellus sp. CBMAI 1062, Bacillus subtilis CBMAI 707, and Dietzia maris CBMAI 705 was selected. This consortium showed 52% of detoxification and 86% of decolorization in the validation assays after seven days of incubation in the presence of 500 ppm of RBBR. Reduction in RBBR color and toxicity were achieved by biosorption and microbial metabolisms. Metatranscriptomic data indicate that the consortium was able to decolorize and breakdown the RBBR molecule using a coordinated action of oxidases, oxygenases, and hydrolases. Epoxide hydrolases and glyoxalases expression could be associated with the decrease in toxicity. The efficiency of this marine microbial consortium suggests their use in bioremediation processes of textile effluents.
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Fernández-Braña Á, Sousa V, Dias-Ferreira C. A structured methodology to understand municipal waste generation at local level with minimized effort: development and case study. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:12597-12612. [PMID: 33089461 DOI: 10.1007/s11356-020-11108-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 10/04/2020] [Indexed: 06/11/2023]
Abstract
Understanding municipal solid waste (MSW) generation is a key requirement for designing and optimizing MSW collection services. The present contribution proposes a statistical methodology to identify MSW generation patterns from MSW collection records. The methodology aims at finding statistically distinct household waste generation patterns within the days of the week and within months (seasonal variation). It is based on standard statistical methods (ANOVA complemented by non-parametric tests and cluster analysis). The methodology was applied to a Portuguese neighbourhood to assist in the definition of a waste sampling campaign to support the implementation of a pilot PAYT. The results showed the existence of groups with statistically distinct MSW generation patterns both at the weekly and monthly time scales. Three clusters of days of the week, with high, medium and low generation, and two clusters of months, with high and low generation, were identified. These results allowed to design and implement a customized field waste sampling campaign to estimate the MSW generated at the study site with minimal field work. Instead of implementing a homogeneous sampling campaign (equal number of samples for every day of the week and for every month), the samples were collected from the days and months that showed statistically distinct MSW generation pattern. The systematic procedure can be easily adapted to any given location, thus being a useful tool that combines statistical analysis with field collected data.
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Wang Y, Zhang B, Kropp J, Morozova N. Inference on tissue transplantation experiments. J Theor Biol 2021; 520:110645. [PMID: 33640451 DOI: 10.1016/j.jtbi.2021.110645] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Revised: 01/25/2021] [Accepted: 02/18/2021] [Indexed: 10/22/2022]
Abstract
We review studies on tissue transplantation experiments for various species: one piece of the donor tissue is excised and transplanted into a slit in the host tissue, then observe the behavior of this grafted tissue. Although we have known the results of some transplantation experiments, there are many more possible experiments with unknown results. We develop a penalty function-based method that uses the known experimental results to infer the unknown experimental results. Similar experiments without similar results get penalized and correspond to smaller probability. This method can provide the most probable results of a group of experiments or the probability of a specific result for each experiment. This method is also generalized to other situations. Besides, we solve a problem: how to design experiments so that such a method can be applied most efficiently.
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171
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Yıldırım S, Sellitepe HE. Vortex assisted liquid-liquid microextraction based on in situ formation of a natural deep eutectic solvent by microwave irradiation for the determination of beta-blockers in water samples. J Chromatogr A 2021; 1642:462007. [PMID: 33735640 DOI: 10.1016/j.chroma.2021.462007] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 02/09/2021] [Accepted: 02/15/2021] [Indexed: 11/19/2022]
Abstract
In this study, a simple, green, and reliable method combining vortex-assisted liquid-liquid microextraction based on in situ formation of a novel hydrophobic natural deep eutectic solvent (NADES-VA-LLME) and high-performance liquid chromatography (HPLC) was developed for the determination of metoprolol and propranolol in water samples. The novel NADES was synthesized in situ within only 20 s by subjecting the water sample containing azelaic acid and thymol to microwave irradiation at 50 ˚C. Initial studies indicated that a 17:1 ratio of thymol to azelaic acid yielded the highest response for analytes. The influence of 7 parameters, including NADES volume, salt amount, sample pH, vortex time, centrifugation time, microwave time, and temperature, were screened using a 27-3 fractional factorial design. The obtained significant parameters were optimized by response surface methodology employing a Box-Behnken design. The method displayed satisfactory linearity (r=0.9996) for metoprolol and propranolol with limits of detection of 0.2 and 0.1 µg/L, respectively. The relative standard deviation at 2.5, 40, and 80 µg/L levels was lower than 6%, with accuracy in the range of 90.8-100.2%. Enrichment factors were 147.0 and 144.4 for metoprolol and propranolol, respectively. This study demonstrates that the developed in situ NADES-VA-LLME-HPLC technique can be considered as a fast and environmentally friendly alternative for isolation/preconcentration of β-blockers from water samples.
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Kazemi Shariat Panahi H, Mohammadipanah F, Rahmati F, Tarlani A, Hamedi J. In-Situ Recovery of Persipeptides from Streptomyces zagrosensis Fermentation Broth by Enhanced Adsorption. IRANIAN JOURNAL OF BIOTECHNOLOGY 2021; 18:e2231. [PMID: 33542931 PMCID: PMC7856400 DOI: 10.30498/ijb.2020.125909.2231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Background: Drug discovery process is growing considerably due to the noteworthy resource of natural products. Persipeptides A and B are cyclopeptide antibiotics, which are produced by Streptomyces zagrosensis UTMC 1154. Although extraction of culture broth with the help of solvent has been optimized previously, no effort for In-Situ extraction of persipeptides has been done yet. Objective: To produce a high quantity of persipeptides for further drug evaluation, it is crucial to design approaches aimed at improvement of the extraction yield. Materials and Methods: Amberlite XAD-16N was employed into the fermentation culture medium of S. zagrosensis in order to enhance the In-Situ
extraction of persipeptides. Effects of resin content (%), resin addition time (h), and fermentation time (day) were investigated by a two-level full factorial experimental design. Results: The main factors of resin content (%) and the interaction of resin content (%) with resin addition time (day) were found to be important using
ANOVA. The results showed the amount of 0.33 % (w.v-1) amberlite XAD-16N added at 27.2 h post-inoculation was the most effective combination
to increase the efficiency of In-Situ adsorption capacity of persipeptides. Conclusions: The provided method requires 3.3
g resin and 200 mL methanol for the extraction of persipeptides from each liter of fermentation culture of S. zagrosensis in less than 15 min.
Apart from cost-efficiently and simplicity, this procedure enhanced the recovery of persipeptides by 7 % and 3 times, compared to ISP2 medium
without any resin after 4 and 7 days of fermentation, respectively. Therefore, this method can be regarded as a cost-efficient enhancement
approach for the production of these newly-discovered metabolites before implementing the genetic manipulation or intensive media optimization, demanding considerable time and effort.
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Perovani IS, Serpellone CO, de Oliveira ARM. An appraisal of experimental designs: Application to enantioselective capillary electromigration techniques. Electrophoresis 2021; 42:1726-1743. [PMID: 33544902 DOI: 10.1002/elps.202000334] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Revised: 01/29/2021] [Accepted: 01/31/2021] [Indexed: 02/06/2023]
Abstract
Enantioresolution processes are vital tools for investigating the enantioselectivities of chiral compounds. An analyst resolves to optimize enantioresolution conditions once they are determined. Generally, optimization is conducted by a one-factor-at-a-time (OFAT) approach. Although this approach may determine an adequate condition for the method, it does not often allow the estimation of the real optimum condition. Experimental designs are conducive for the optimization of enantioresolution methods via capillary electromigration techniques (CETs). They can efficiently extract information from the behavior of a method and enable the estimation of the real optimum condition. Furthermore, the application of the analytical quality by design (AQbD) approach to the development of CET-based enantioselective methods is a trend. This article (i) offers an overview of the application of experimental designs to the development of enantioselective methods from 2015 to mid-2020, (ii) reveals the experimental designs that are presently employed in CET-based enantioresolutions, and (iii) offers a critical point of view on how the different experimental designs can aid the optimization of enantioresolution processes by considering the method parameters.
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Fattahi M, Ezzatzadeh E, Jalilian R, Taheri A. Micro solid phase extraction of cadmium and lead on a new ion-imprinted hierarchical mesoporous polymer via dual-template method in river water and fish muscles: Optimization by experimental design. JOURNAL OF HAZARDOUS MATERIALS 2021; 403:123716. [PMID: 33264894 DOI: 10.1016/j.jhazmat.2020.123716] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 08/04/2020] [Accepted: 08/11/2020] [Indexed: 06/12/2023]
Abstract
In the present study, a new class of hierarchical silica based imprinted mesoporous polymers was fabricated by ion imprinting technology and it was applied to simultaneous selective extraction of cadmium and lead ions by micro solid phase extraction (μ-SPE). The biological nanocrystalline cellulose (BNCC) was prepared via acid catalyzed hydrolysis of cotton wool. The hierarchical silica (HS), as a substrate material, was synthesized via dual-template method, using BNCC and cetyltrimethylammonium bromide (CTAB) as hard and soft templates respectively. The structure and functional groups was characterized by Fourier infrared spectroscopy (FT-IR), transmission electron microscopy (TEM), X-ray diffraction (XRD) and nitrogen adsorption-desorption. The results indicate that the as-prepared material has a hierarchical mesoporous structure with high specific surface area and high adsorption capacity for Cd(II) and Pb(II). The optimum experimental conditions in the proposed procedure were determined by response surface methodology (RSM) based on Box Behnken Design (BBD) and then it was successfully applied to determine Cd(II) and Pb(II) ions in the river water and fish samples.
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175
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Piemjaiswang R, Ding Y, Feng Y, Piumsomboon P, Chalermsinsuwan B. Effect of transport parameters on atherosclerotic lesion growth: A parameter sensitivity analysis. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 199:105904. [PMID: 33360530 DOI: 10.1016/j.cmpb.2020.105904] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 12/06/2020] [Indexed: 06/12/2023]
Abstract
BACKGROUND Atherosclerosis is a degenerative disease of the arterial wall. It results in the formation of progressively growing plaque lesions that can harden and narrow their host arteries. Current computational models of the inflammatory process that govern atherosclerosis growth are reliant on a number of parameters that can freely vary and whose precise values are not well known. METHODS To identify the significance of variation in such parameters, a parametric sensitivity study had been conducted on the blood density, blood viscosity, plasma viscosity and bulk flow low density lipoprotein (LDL) concentration. Using computational modeling, the significance of variation in these parameters was assessed on the transport of LDL. The simulation was performed via the 2k factorial experimental design, which was conducted to identify the significance of the select parameters on the intima LDL concentration and endothelial LDL coverage area. RESULTS Results identified the blood viscosity and bulk flow LDL concentration are the dominant parameters for the atherosclerotic lesion growth. The coverage of LDL on the arterial wall surface was strongly dependent on the blood viscosity. The significance of these findings was discussed. CONCLUSION This statistical study identifies two dominating blood factors, LDL concentration and blood viscosity, and how they influence atherosclerosis which will serves as a guideline for further investigation on the atherosclerosis topic.
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