Systematics and Emerging Infectious Diseases: From Management to Solution

The crisis of emerging infectious disease stems from the absence of comprehensive taxonomic inventories of the world's parasites, which includes the world's pathogens. Recent technological developments raise hopes that the global inventory of species, including potential pathogens, can be accomplished in a timely and cost-effective manner. The phylogenetics revolution initiated by systematists provides a means by which information about pathogen transmission dynamics can be placed in a predictive framework. Increasingly, that information is widely available in digital form on the Internet. Systematic biology is well positioned to play a crucial role in efforts to be proactive in the arena of emerging parasitic and infectious diseases.

The evolution and diversity of kinetoplastid flagellates

Five years ago, little was known about kinetoplastid evolution. Recent improvements in the taxon sampling for nuclear rRNA genes and several protein markers have transformed this understanding. Parasitism evolved at least four times in kinetoplastids. Obligate parasitic trypanosomatids are a relatively 'derived' group within kinetoplastids; their closest relative is likely to be the free-living Bodo saltans, and the ancestral trypanosomatids were probably parasites of insects. Although subject to recent controversy, trypanosomes (genus Trypanosoma) probably constitute a monophyletic group. Several unusual features of trypanosomatid genomes (e.g. trans-splicing, mitochondrial RNA editing and intron poverty) are common in kinetoplastids and pre-date the adoption of parasitism. The framework of relationships is becoming robust enough for real comparative approaches to be used to understand kinetoplastid biology.

Molecular methods for assessing insect parasitism

Determining insect parasitism rates is problematic due to the small size and lack of useful distinguishing morphological characters of many parasitoid taxa. To solve this problem, entomologists have employed one of four general methods to detect parasitoid protein or nucleic acid markers: serological assay; random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR); allozyme electrophoresis; or specific PCR. Serological methods, especially with monoclonal antibodies, are unrivalled for specificity, enabling discrimination at the stage as well as species level. However, they have not found favour with many workers, possibly due to complexity and expense. RAPD-PCR has been widely used, but can only be recommended for restricted applications because of its poor reproducibility. Allozyme electrophoresis provides reproducible detection and discrimination of closely related species. Specific-PCR is highly specific and reproducible, and also has the shortest latency for detection, usually 24 h or less after parasitization. The substantial existing literature on allozyme electrophoresis and specific PCR is used to support recommendations on what are apt to be fruitful enzyme systems or genomic regions for detecting and discriminating parasitoids in untried parasitoid-host assemblages.

The species concept in parasites and other pathogens: a pragmatic approach?

Although the problem of speciation is a puzzle for evolutionists, species are not mere fantasies. In many cases, it is possible to identify evolutionary entities that deserve to be attributed the name 'species' and that are relevant to medical researchers and decision makers. All approaches to the problem of speciation in pathogens are specific cases of four main concepts (or combinations thereof): biological, phylogenetic, phenetic and phenotypic. Modern genetic concepts and technologies help to juggle these concepts.

Intestinal parasitism in Peruvian children and molecular characterization of Cryptosporidium species

Intestinal parasitism was studied in children of Trujillo (Peru) to create a prevention and control program. Fecal samples of 489 children were examined. The general prevalence of intestinal parasitosis was found to be 68%. The most frequent pathogenic enteroparasites were Giardia lamblia (26.4%), Cyclospora cayetanensis (13%), Hymenolepis nana (2%), Hymenolepis diminuta (1.6%), and Cryptosporidium spp. (1%). All these parasites appeared both in diarrheic and nondiarrheic children, except Cryptosporidium, which invariably caused diarrhea. Multiple parasitism was frequent, 45.6% of the children presenting two, three, or four intestinal parasites. Cryptosporidium was the only parasite that was not associated with the others. Only five children were affected of cryptosporidiosis, presenting explosive diarrhea, nausea, and vomiting. Cryptosporidium species and genotypes involved in the infantile cryptosporidiosis were determined by polymerase chain reaction-restriction fragment length polymorphism. Four children were parasitized by Cryptosporidium hominis and only one by Cryptosporidium parvum. Our results confirm that anthroponotic transmission of Cryptosporidium is predominant in Peru.

[Molecular diagnostic of parasites using rRNA gene sequence]

Ribosomal RNA (rRNA) is a component of the ribosomes. Eukaryotic ribosomes contain four different rRNA molecules: 18S, 5,8S, 28S and 5S rRNA. rRNA is the most conserved (least variable) gene in all cells. For this reason, genes that encode the rRNA (rDNA) are sequenced to identify an organism's taxonomic group, calculate related groups, and estimate rates of species divergence. Especially the internal transcribed spacers (ITS) are very useful for molecular diagnostic of parasite. They are noncoding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs. These ribosomal RNA (rRNA) genes are highly conserved across taxa while the spacers between them may be species-specific. In this paper authors describe practical using of rRNA gene to parasite diagnostic.

Parasites of carnivorous mammals in Białowieza Primeval Forest

BACKGROUND

Although the parasitofauna of wild carnivorous mammals in Poland is quite well recognized, there has been only one research carried on this issue so far in Białowieza Forest--the last lowland primeval forest of temperate zone in Europe.

MATERIAL AND METHODS

Twelve wild and two domestic species of carnivorous mammals are living in Białowieza Forest. In our work faeces or intestines of all of them except ermine (Mustela erminea) have been examined and parasites or their eggs (or oocysts) recorded. In total 222 faecal probes from 13 species and 11 intestines of weasels have been investigated.

RESULTS

All species of examined carnivorous mammals were infected with parasites. The most infected species has occurred red fox Vulpes vulpes (over 70% infected with parasites) meanwhile only about 30% of otters Lutra lutra were infected. We found at least three protozoan species, one trematode, one tapeworm and nine species of nematodes. Except trematode Alaria alata, all of them are reported for the first time from Białowieza Primeval Forest. Oocysts of coccidia have been found in faeces of nine host species, with the highest prevalence (29.4%) in badger. Six species of carnivorous mammals have been occurred infected with trematodes (highest prevalence 42.1% in wolves) and two with tapeworms (Diphyllobothrium latum with the prevalence 2.6% in otter and 31.6% in wolves). All examined host species were infected with nematodes (with prevalence from 14.7% in lynx to 72.7% in red fox). Results of our work should be treated as preliminary researches on the species composition of parasitic fauna invading carnivorous mammals in Białowieza Primeval Forest.

Application of cognitive engineering principles to the redesign of a dichotomous identification key for parasitology

Dichotomous identification keys are used throughout biology for identification of plants, insects, and parasites. However, correct use of identification keys can be difficult as they are not usually intended for novice users who may not be familiar with the terminology used or with the morphology of the organism being identified. Therefore, we applied cognitive engineering principles to redesign a parasitology identification key for the Internet. We addressed issues of visual clutter and spatial distance by displaying a single question couplet at a time and by switching to the appropriate next couplet after the user made a choice. Our analysis of the original paper-based key versus the Web-based approach found that of 26 applicable cognitive engineering principles, the paper key did not meet 4 (15%) and partially met 11 (42%). In contrast, the redesigned key met 100% of 32 applicable cognitive engineering principles.

An epidemiological study of gastrointestinal parasites of dogs from Southern Greater Buenos Aires (Argentina): age, gender, breed, mixed infections, and seasonal and spatial patterns

A total of 2193 fecal samples from owned dogs were collected during the 2003-2004 period in Southern Greater Buenos Aires, and were evaluated for the presence of intestinal parasites by a flotation-centrifugation method. The overall prevalence was 52.4%, and the 11 species found were: Ancylostoma caninum (13%), Isospora ohioensis complex (12%), Toxocara canis (11%), Trichuris vulpis (10%), Sarcocystis sp. (10%), Giardia duodenalis (9%), Isospora canis (3%), Hammondia-Neospora complex (3%), Dipilydium caninum (18 cases), Cryptosporidium sp. (5 cases), and Toxascaris leonina (1 case). There was no significant difference in the overall prevalence between genders (female = 50.4%, male = 54.6%), and breeds (pure = 52.3%, mixed = 53%), but prevalence in puppies (<1 year) was higher than in adult dogs (62.7% versus 40.8%, respectively). Only the prevalence of A. caninum differed between genders, with higher values for males. The prevalences of six of the parasite species showed a decreasing trend with increasing host age, and an inverse pattern was found for two other species. The prevalences of three protozoa were significantly higher in pure-breed dogs, and those of two nematodes were significantly higher in mixed-breed dogs. The prevalences of T. canis, A. caninum, and T. vulpis were spatially heterogeneous with a clear Southwest-Northeast gradient. Only prevalences of Sarcocystis sp. and G. duodenalis showed seasonal variation. The frequency distribution of the number of species per fecal sample did not differ from a random distribution. Results obtained throughout the world were discussed.

A checklist of parasites recorded on sticklebacks (Actinopterygii: Gasterosteidae) from Poland

Parasites of the three-spined stickleback, Gasterosteus aculeatus (L.), and the nine-spined stickleback, Pungitius pungitius (L.), from brackish and freshwater habitats in Poland are listed. The following list was compiled from published records and own long-term studies. Parasites are listed alphabetically in meaningful groups of parasites with notes about their location on the host and distribution in Poland with references. A total of 51 species (taxa) of parasites were recorded on G. aculeatus (3 Apicomplexa, 1 Microsporidia, 3 Peritrichia, 1 Myxozoa, 7 Digenea, 2 Monogenea, 10 Cestoda, 10 Nematoda, 7 Acanthocephala, 3 Copepoda, 1 Branchiura, 2 Hirudinea, 1 Bivalvia) and 16 parasites on P. pungitius (1 Apicomplexa, 1 Microsporidia, 2 Peritrichia, 4 Digenea, 1 Monogenea, 2 Cestoda, 2 Nematoda, 1 Copepoda, 1 Branchiura, 1 Bivalvia).

Coevolutionary interactions between host and parasite genotypes

More than 20 years after Dawkins introduced the concept of "extended phenotype" (i.e. phenotypes of hosts and parasites result from interactions between the two genomes) and although this idea has now reached contemporary textbooks of evolutionary biology, most studies of the evolution of host-parasite systems still focus solely on either the host or the parasite, neglecting the role of the other partner. It is important to consider that host and parasite genotypes share control of the epidemiological parameters of their relationship. Moreover, not only the traits of the infection but also the genetic correlations among these and other traits that determine fitness might be controlled by interactions between host and parasite genotypes.

Molecular characterization of closely related species in the parasitic genus Encarsia (Hymenoptera: Aphelinidae) based on the mitochondrial cytochrome oxidase subunit I gene

The genus Encarsia Förster includes parasitoid species that are effective natural enemies of whitefly and armoured scale insect agricultural pests. Within this genus, several species groups have been recognized on the basis of morphological similarity, although their monophyly appears uncertain. It is often difficult to separate morphologically similar species, and there is evidence that some species could in fact be complexes of cryptic species. Their correct identification is fundamental for biological control purposes. Recently, due to unreliability of morphological characters, molecular techniques have been investigated to identify markers that differentiate closely related species. In this study, DNA variation in an approximately 900 bp segment of the mitochondrial cytochrome oxidase subunit I (COI) gene was examined by both sequencing and PCR-RFLP. Two pairs of species that are difficult to distinguish morphologically were analysed: Encarsia formosa Gahan and Encarsialuteola Howard, belonging to the luteola group, and two populations of Encarsiasophia (Girault & Dodd) from Pakistan and Spain, belonging to the strenua group, recently characterized as cryptic species. High sequence divergence and species-specific restriction patterns clearly differentiate both species pairs. Parsimony analysis of the nucleotide sequences was also performed, including Encarsiahispida De Santis (luteola group) and Encarsia protransvena Viggiani (strenua group). Two monophyletic clades supporting the two groups of species considered were resolved. The results of this study support the use of the COI gene as a useful marker in separating species of Encarsia, for which morphological differences are subtle. Moreover, the COI gene appears potentially useful for understanding phylogenetic relationships in this genus.

Speciation in parasites: a population genetics approach

Parasite speciation and host-parasite coevolution should be studied at both macroevolutionary and microevolutionary levels. Studies on a macroevolutionary scale provide an essential framework for understanding the origins of parasite lineages and the patterns of diversification. However, because coevolutionary interactions can be highly divergent across time and space, it is important to quantify and compare the phylogeographic variation in both the host and the parasite throughout their geographical range. Furthermore, to evaluate demographic parameters that are relevant to population genetics structure, such as effective population size and parasite transmission, parasite populations must be studied using neutral genetic markers. Previous emphasis on larger-scale studies means that the connection between microevolutionary and macroevolutionary events is poorly explored. In this article, we focus on the spatial fragmentation of parasites and the population genetics processes behind their diversification in an effort to bridge the micro- and macro-scales.

Identification and expression of a small heat shock protein in two lines of the endoparasitic wasp Venturia canescens

Increased expression of small heat shock proteins (sHSPs) is known to be a key regulatory mechanism in extending tolerance to a variety of environmental stresses. In the present study, a full-length cDNA clone encoding a member of the alpha-crystallin/sHSP family was isolated and characterized from the endoparasitic wasp Venturia canescens (Hymenoptera: Ichneumonidae). Western blot analysis indicated that the mature protein has a mass of about 35 kDa (Vc_sHSP35). Sequence analysis of RT-PCR products revealed that two transcript forms of the gene are expressed in different developmental stages and tissues of the wasp, with the longer form likely to contain an unspliced intron sequence. Furthermore, gene expression was analysed in ovaries of V. canescens wasps from two genetically different lines after exposure to different temperatures (heat or cold shock and heat or cold acclimation, respectively). Wasps from both lines principally showed the same cold induced change in expression of the shorter transcript form (Vc_sHSP35-2). However, expression levels were higher in wasps from one line compared to the other. These results are discussed in relation to the environmental stress resistance and molecular ecology of both V. canescens lines.

Multi-host parasite species in cophylogenetic studies

Cophylogenetic studies examine the relationship between host and parasite evolution. One aspect of cophylogenetic studies that has had little modern discussion is parasites with multiple definitive hosts. Parasite species with multiple host species are anomalous as, under a codivergence paradigm, speciation by the hosts should cause speciation of their parasites. We discuss situations such as cryptic parasite species, recent host switching or failure to speciate that may generate multi-host parasites. We suggest methods to identify which of the mechanisms have led to multi-host parasitism. Applying the suggested methods may allow multi-host parasites to be integrated more fully into cophylogenetic studies.

Community ecology of the metazoan parasites of Atlantic moonfish, Selene setapinnis (Osteichthyes: Carangidae) from the coastal zone of the State of Rio de Janeiro, Brazil

Eighty-nine specimens of Selene setapinnis (Mitchill, 1815) collected from the coastal zone of the State of Rio de Janeiro (21-23 degrees S, 41-45 degrees W and 23 degrees 05'S, 44 degrees 30'W), Brazil, from August 2001 to May 2002, were necropsied to study their metazoan parasites. Eighty-one (91%) specimens of S. setapinnis were parasitized by one or more metazoan species. Twenty-one species of parasites were collected: 8 digeneans, 3 monogeneans, 2 cestodes, 5 nematodes, and 3 copepods. The endoparasites (digeneans, cestodes, and nematodes) were 74.1% of total number of parasite specimens collected. The monogenean Pseudomazocraes selene (Hargis, 1957) was the most dominant species with the highest prevalence in the parasite community of S. setapinnis. The metazoan parasites of this host species showed the typical aggregated pattern of distribution. Only one parasite species (Acanthocolpoides pauloi Travassos, Freitas & Buhrnheim, 1955) showed positive correlation between the host total length and parasite abundance in S. setapinnis. Caligus robustus Bassett-Smith, 1898, P. selene, and Terranova sp. demonstrated positive correlation between the host total length and prevalence. Larvae of Terranova sp. showed influence of the host sex on its prevalence. A pair of ectoparasite species, P. selene-C. robustus, exhibited positive covariation between their abundances. Two pairs of endoparasite species, L. microstomum-P. merus and A. pauloi-P. merus showed significant covariation among their abundances; and the pair Terranova sp.-Raphidascaris sp. had positive co-ocorrence and covariation in the infracommunities of S. setapinnis. Like the parasite communities of the other carangid fishes from Rio de Janeiro, the parasite community of S. setapinnis is apparently only a slightly ordered species complex, characterized by dominance of endoparasite species.

Mining parasite data using genetic programming

Genetic programming is a technique that can be used to tackle the hugely demanding data-processing problems encountered in the natural sciences. Application of genetic programming to a problem using parasites as biological tags demonstrates its potential for developing explanatory models using data that are both complex and noisy.

Comparative studies on goby (Teleostei) parasite communities from the North and Baltic Sea

The parasite communities of three goby species from the marine North and the brackish Baltic Sea were compared. The samples of summer 1992/93 from Helgoland, Lubeck and Kiel Bight comprised a parasite spectrum of 4-5 in Pomatoschistus microps, 2-3 in P. pictus or 3-8 parasite species in Gobiusculus flavescens. The highest numbers were found in Kiel Bight whereas those of Helgoland and Lubeck Bight differed between 3 and 7, respectively. In comparing the species identity of the studied localities the value was intermediate in P. microps, low in P. pictus and zero in G. flavescens. Values of prevalence and abundance were clearly lower in Helgoland than in Baltic localities. The prey of Helgoland goby populations comprised meio- and macrobenthos in P. microps, predominantly macrobenthos but also meiobenthos and some plankton in P. pictus, and predominantly plankton and some benthos in G. flavescens. Former studies (Zander in J Zool Syst Evol Res 32:220 1994) revealed a greater variability of prey choice in the Baltic. The greater parasite richness in the Baltic compared with that of Helgoland, may lie on better adaptations of genuine brackish components, lower defence mechanisms of hosts as a consequence of lower salinity, and greater variability in habitat choice. The effect of several filters on the colonisation of parasites in hosts is submitted here in a model.

A comparative study on the parasite fauna of perch, Perca fluviatilis L., collected from a freshwater coastal lake, brackish-water Baltic Sea, and the interconnecting canal

BACKGROUND

Parasitological surveys of freshwater fishes rarely include comparisons between two ecologically different bodies of water. Such studies might help to understand processes of establishment of parasite faunas in estuary areas. The results obtained could also provide useful tools for discriminating various fish populations based on the composition of their parasite faunas. The present authors attempted to study such data from Resko Lake-a freshwater coastal lagoon (6 km2 surface area), and the adjacent areas of the Baltic Sea. Resko Lake, located 12 km west of the city of Kołobrzeg, is shallow (1.5 m) and is connected to the sea through a small canal (1.3 km long, 30 m wide).

MATERIAL AND METHODS

The material was collected from April 1969 and July 1970. A total of 159 perch were collected, in this number 104 fish from the lake, 43 from the sea, and 12 from the canal.

RESULTS

A total of 32 parasite species were recovered from the fish necropsied. The parasites represented 7 higher taxa: Protozoa (3 species), Cestoda (4), Digenea (13), Nematoda (5), Acanthocephala (3), Mollusca (1), and Crustacea (3). The parasite fauna of perch from the sea was definitely more abundant (31 species) compared to that of the lake (21), and the canal (12 species). Infection parameters of 13 parasite species demonstrated significant differences between the locations studied. The infection level of 6 parasite species was significantly higher in perch from the sea: Bothriocephalus scorpii, Ligula sp., Brachyphallus crenatus, Camallanus truncatus, Hysterothylacium aduncum, and Echinorhynchus gadi. On the other hand, infection levels of 7 other species were higher at the lake: Triaenophorus nodulosus, Bucephalus polymorphus, Azygia lucii, Tylodelphys clavata, Camallanus lacustris, Acanthocephalus lucii, and Achtheres percarum. The infection parameters of the fish from canal were similar to those from the lake. Interesting observations were made on the seasonality of certain parasites of both lake- and Baltic perch. The presently observed differences between parasite faunas of the fish from ecologically different adjacent estuarine locations are certainly caused by diversified environmental conditions that affected the processes of formation of the parasite communities there. Among important factors that could affect compositions of the parasite faunas could have been: availability of the intermediate hosts, exchange of waters (Baltic water influxes to the lake), fish migrations (spawning), and finally the separate identity of the two fish stocks studied.

Four-year monitoring of parasite communities in gobiid fishes of the southwest Baltic

The parasite infrapopulations of five goby species (Pomatoschistus minutus, P. pictus, P.microps, Gobiusculus flavescens and Gobius niger) were investigated during spring, summer and autumn of the years 1997-2000. In total, 34 parasite species were found: 17 Digenea, 6 Nematoda, 5 Cestoda, 3 Acanthocephala, 2 Protozoa, and 1 Monogenea. The dominant parasites were the digeneans Podocotyle atomon and Cryptocotyle concavum, which represent different ecological groups in terms of their modes of transmission, either indirectly by prey or directly by larvae. The relationship between the parasite Cryptocotyle concavum and the host P. microps is a special one which results in a mean intensity of several hundred cysts (max. 1,329) which settle in the kidney. The diversity of the parasite component community was highest in autumn, but low in spring and summer, with the exception of P. microps for which high values were already found in spring when direct parasites were disregarded. These results depend on the respective seasonal variation in species, some of which occur in huge numbers in some hosts. The diversity of the prey parasite assemblage is higher in Pomatoschistus microps and Gobius niger than in the whole parasite spectrum; the other hosts present the opposite trend. A combination of the island theory of biogeography as modified for parasite infection with the theory of screens and filters leads to a model which considers three handicaps or distances for parasite colonisation: genetic, phylogenetic and ecological. Long-term investigations, as performed here over a time-span of 4 years, can detect more than 80% of parasite species in single hosts after 3 years, and in the whole goby guild after 2 years. Long-term investigations can be useful for finding rare parasites, in analysing parasite diversity, and for determining the seasonality of parasites.