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Subramaniam JD, Hattori Y, Asanoma F, Nishino T, Yasuhara K, Martin CJ, Rapenne G. Synthesis of Ce(IV) Heteroleptic Double-Decker Complex with a New Helical Naphthalocyanine as a Potential Gearing Subunit. Chemistry 2024; 30:e202402470. [PMID: 39073203 DOI: 10.1002/chem.202402470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 07/26/2024] [Accepted: 07/29/2024] [Indexed: 07/30/2024]
Abstract
This paper describes the synthesis of a cerium(IV)-based molecular gear composed of a thioether functionalized phthalocyanine anchoring ligand, and a helical naphthalocyanine rotating cogwheel functionalized with four carbazoles. The naphthalocyanine ligand 9 was obtained after eleven steps (overall yield of 0.2 %) as a mixture of three geometrical isomers, two of which are chiral and exhibit high levels of steric hindrance, as shown by DFT calculations. Their attributions have been made using 1H-NMR based on their different symmetry groups. The ratio of isomers was also determined and the prochiral C4h naphthalocyanine shown to be the major compound (55 %). Its heteroleptic complexation with cerium (IV) and the anchoring phthalocyanine ligand 10 gave the targeted molecular gear in a 16 % yield.
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Affiliation(s)
- Jeevithra Dewi Subramaniam
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
| | - Yohei Hattori
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
| | - Fumio Asanoma
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
| | - Toshio Nishino
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
| | - Kazuma Yasuhara
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
- Center for Digital Green-innovation, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
| | - Colin J Martin
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
| | - Gwénaël Rapenne
- Division of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, 630-0192, Japan
- CEMES, Université de Toulouse, CNRS, 29, rue Marvig, 31055, Toulouse, France
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2
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Ariga K, Song J, Kawakami K. Molecular machines working at interfaces: physics, chemistry, evolution and nanoarchitectonics. Phys Chem Chem Phys 2024; 26:13532-13560. [PMID: 38654597 DOI: 10.1039/d4cp00724g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
As a post-nanotechnology concept, nanoarchitectonics combines nanotechnology with advanced materials science. Molecular machines made by assembling molecular units and their organizational bodies are also products of nanoarchitectonics. They can be regarded as the smallest functional materials. Originally, studies on molecular machines analyzed the average properties of objects dispersed in solution by spectroscopic methods. Researchers' playgrounds partially shifted to solid interfaces, because high-resolution observation of molecular machines is usually done on solid interfaces under high vacuum and cryogenic conditions. Additionally, to ensure the practical applicability of molecular machines, operation under ambient conditions is necessary. The latter conditions are met in dynamic interfacial environments such as the surface of water at room temperature. According to these backgrounds, this review summarizes the trends of molecular machines that continue to evolve under the concept of nanoarchitectonics in interfacial environments. Some recent examples of molecular machines in solution are briefly introduced first, which is followed by an overview of studies of molecular machines and similar supramolecular structures in various interfacial environments. The interfacial environments are classified into (i) solid interfaces, (ii) liquid interfaces, and (iii) various material and biological interfaces. Molecular machines are expanding their activities from the static environment of a solid interface to the more dynamic environment of a liquid interface. Molecular machines change their field of activity while maintaining their basic functions and induce the accumulation of individual molecular machines into macroscopic physical properties molecular machines through macroscopic mechanical motions can be employed to control molecular machines. Moreover, research on molecular machines is not limited to solid and liquid interfaces; interfaces with living organisms are also crucial.
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Affiliation(s)
- Katsuhiko Ariga
- Research Center for Materials Nanoarchitectonics, National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba 305-0044, Japan.
- Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwa-no-ha, Kashiwa 277-8561, Japan
| | - Jingwen Song
- Research Center for Functional Materials, National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba 305-0044, Ibaraki, Japan
| | - Kohsaku Kawakami
- Research Center for Functional Materials, National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba 305-0044, Ibaraki, Japan
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8577, Ibaraki, Japan
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3
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Si W, Lin X, Wang L, Wu G, Zhang Y, Chen Y, Sha J. Nanopore actuation of a DNA-tracked nanovehicle. NANOSCALE 2023; 15:14659-14668. [PMID: 37622615 DOI: 10.1039/d3nr02633g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/26/2023]
Abstract
As a kind of nanomachine that has great potential for applications in nanoscale sensing and manipulation, nanovehicles with unique shapes and functions have received extensive attention in recent years. Different from the existing common method of using synthetic chemistry to design and manufacture a nanovehicle, here we theoretically report a molecularly assembled DNA-tracked nanovehicle that can move on a solid-state surface using molecular dynamics simulations. A graphene membrane with four nanopores acts as the chassis of the nanoscale vehicle, and two circular ssDNAs across the nanopores serve as the wheels. The electroosmotic flows induced by independently charged nanopores with different surface charge densities under external electric fields were found to be the main power to actuate the controlled rotary motion of circular ssDNAs across every two nanopores. By tuning the rotary speed of each circular ssDNA, the linear and turning movements of the designed nanovehicle were realized. The designed nanovehicle makes it possible to have access to almost everywhere in the human body, which would lead to significant breakthroughs in the fields of nanoscale surgery, drug delivery and so on. The research not only enriches the family of nanorobots, but also opens another way for designing nanovehicles.
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Affiliation(s)
- Wei Si
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, School of Mechanical Engineering, Southeast University, Nanjing 211100, China.
| | - Xiaojing Lin
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, School of Mechanical Engineering, Southeast University, Nanjing 211100, China.
| | - Liwei Wang
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, School of Mechanical Engineering, Southeast University, Nanjing 211100, China.
| | - Gensheng Wu
- School of Mechanical and Electronic Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Yin Zhang
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, School of Mechanical Engineering, Southeast University, Nanjing 211100, China.
| | - Yunfei Chen
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, School of Mechanical Engineering, Southeast University, Nanjing 211100, China.
| | - Jingjie Sha
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, School of Mechanical Engineering, Southeast University, Nanjing 211100, China.
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4
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Avdeeva VV, Nikiforova SE, Malinina EA, Sivaev IB, Kuznetsov NT. Composites and Materials Prepared from Boron Cluster Anions and Carboranes. MATERIALS (BASEL, SWITZERLAND) 2023; 16:6099. [PMID: 37763377 PMCID: PMC10533147 DOI: 10.3390/ma16186099] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Revised: 09/04/2023] [Accepted: 09/04/2023] [Indexed: 09/29/2023]
Abstract
Here, we present composites and materials that can be prepared starting with boron hydride cluster compounds (decaborane, decahydro-closo-decaborate and dodecahydro-closo-dodecaborate anions and carboranes). Recent examples of their utilization as boron protective coatings including using them to synthesize boron carbide, boron nitride, metal borides, metal-containing composites, and neutron shielding materials are discussed. The data are generalized demonstrate the versatile application of materials based on boron cluster anions and carboranes in various fields.
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Affiliation(s)
- Varvara V. Avdeeva
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, 31 Leninskii Av., Moscow 119991, Russia; (S.E.N.); (E.A.M.); (N.T.K.)
| | - Svetlana E. Nikiforova
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, 31 Leninskii Av., Moscow 119991, Russia; (S.E.N.); (E.A.M.); (N.T.K.)
| | - Elena A. Malinina
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, 31 Leninskii Av., Moscow 119991, Russia; (S.E.N.); (E.A.M.); (N.T.K.)
| | - Igor B. Sivaev
- Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., Moscow 119991, Russia;
- Basic Department of Chemistry of Innovative Materials and Technologies, Plekhanov Russian University of Economics, 36 Stremyannyi Line, Moscow 117997, Russia
| | - Nikolay T. Kuznetsov
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, 31 Leninskii Av., Moscow 119991, Russia; (S.E.N.); (E.A.M.); (N.T.K.)
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5
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Singhania A, Kalita S, Chettri P, Ghosh S. Accounts of applied molecular rotors and rotary motors: recent advances. NANOSCALE ADVANCES 2023; 5:3177-3208. [PMID: 37325522 PMCID: PMC10262963 DOI: 10.1039/d3na00010a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Accepted: 05/17/2023] [Indexed: 06/17/2023]
Abstract
Molecular machines are nanoscale devices capable of performing mechanical works at molecular level. These systems could be a single molecule or a collection of component molecules that interrelate with one another to produce nanomechanical movements and resulting performances. The design of the components of molecular machine with bioinspired traits results in various nanomechanical motions. Some known molecular machines are rotors, motors, nanocars, gears, elevators, and so on based on their nanomechanical motion. The conversion of these individual nanomechanical motions to collective motions via integration into suitable platforms yields impressive macroscopic output at varied sizes. Instead of limited experimental acquaintances, the researchers demonstrated several applications of molecular machines in chemical transformation, energy conversion, gas/liquid separation, biomedical use, and soft material fabrication. As a result, the development of new molecular machines and their applications has accelerated over the previous two decades. This review highlights the design principles and application scopes of several rotors and rotary motor systems because these machines are used in real applications. This review also offers a systematic and thorough overview of current advancements in rotary motors, providing in-depth knowledge and predicting future problems and goals in this area.
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Affiliation(s)
- Anup Singhania
- Natural Product Chemistry Group, Chemical Sciences & Technology Division, CSIR-North East Institute of Science & Technology Jorhat 785006 Assam India
- Academy of Scientific and Innovative Research (AcSIR) Ghaziabad 201002 India
| | - Sudeshna Kalita
- Natural Product Chemistry Group, Chemical Sciences & Technology Division, CSIR-North East Institute of Science & Technology Jorhat 785006 Assam India
- Academy of Scientific and Innovative Research (AcSIR) Ghaziabad 201002 India
| | - Prerna Chettri
- Natural Product Chemistry Group, Chemical Sciences & Technology Division, CSIR-North East Institute of Science & Technology Jorhat 785006 Assam India
- Academy of Scientific and Innovative Research (AcSIR) Ghaziabad 201002 India
| | - Subrata Ghosh
- Natural Product Chemistry Group, Chemical Sciences & Technology Division, CSIR-North East Institute of Science & Technology Jorhat 785006 Assam India
- Academy of Scientific and Innovative Research (AcSIR) Ghaziabad 201002 India
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6
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Schied M, Prezzi D, Liu D, Kowarik S, Jacobson PA, Corni S, Tour JM, Grill L. Chirality-Specific Unidirectional Rotation of Molecular Motors on Cu(111). ACS NANO 2023; 17:3958-3965. [PMID: 36757212 PMCID: PMC9979643 DOI: 10.1021/acsnano.2c12720] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Accepted: 01/31/2023] [Indexed: 06/18/2023]
Abstract
Molecular motors have chemical properties that enable unidirectional motion, thus breaking microscopic reversibility. They are well studied in solution, but much less is known regarding their behavior on solid surfaces. Here, single motor molecules adsorbed on a Cu(111) surface are excited by voltages pulses from an STM tip, which leads to their rotation around a fixed pivot point. Comparison with calculations shows that this axis results from a chemical bond of a sulfur atom in the chemical structure and a metal atom of the surface. While statistics show approximately equal rotations in both directions, clockwise and anticlockwise, a detailed study reveals that these motions are enantiomer-specific. Hence, the rotation direction of each individual molecule depends on its chirality, which can be determined from STM images. At first glance, these dynamics could be assigned to the activation of the motor molecule, but our results show that this is unlikely as the molecule remains in the same conformation after rotation. Additionally, a control molecule, although it lacks unidirectional rotation in solution, also shows unidirectional rotation for each enantiomer. Hence, it seems that the unidirectional rotation is not specifically related to the motor property of the molecule. The calculated energy barriers for motion show that the propeller-like motor activity requires higher energy than the simple rotation of the molecule as a rigid object, which is therefore preferred.
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Affiliation(s)
- Monika Schied
- Department
of Physical Chemistry, Institute of Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Deborah Prezzi
- Nanoscience
Institute of the National Research Council (CNR-NANO), via G. Campi 213/a, 41125 Modena, Italy
| | - Dongdong Liu
- Departments
of Chemistry and Materials Science and NanoEngineering, the Smalley
Institute for Nanoscale Science and Technology, the Welch Institute
for Advanced Materials and the NanoCarbon Laboratory, Rice University, Houston, Texas 77005, United States
| | - Stefan Kowarik
- Department
of Physical Chemistry, Institute of Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Peter A. Jacobson
- Department
of Physical Chemistry, Institute of Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Stefano Corni
- Nanoscience
Institute of the National Research Council (CNR-NANO), via G. Campi 213/a, 41125 Modena, Italy
- Dipartimento
di Scienze Chimiche, Università di
Padova, Padova I-35131, Italy
| | - James M. Tour
- Departments
of Chemistry and Materials Science and NanoEngineering, the Smalley
Institute for Nanoscale Science and Technology, the Welch Institute
for Advanced Materials and the NanoCarbon Laboratory, Rice University, Houston, Texas 77005, United States
| | - Leonhard Grill
- Department
of Physical Chemistry, Institute of Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
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7
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Barragán A, Nicolás-García T, Lauwaet K, Sánchez-Grande A, Urgel JI, Björk J, Pérez EM, Écija D. Design and Manipulation of a Minimalistic Hydrocarbon Nanocar on Au(111). Angew Chem Int Ed Engl 2023; 62:e202212395. [PMID: 36445791 DOI: 10.1002/anie.202212395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 11/16/2022] [Accepted: 11/28/2022] [Indexed: 11/30/2022]
Abstract
Nanocars are carbon-based single-molecules with a precise design that facilitates their atomic-scale control on a surface. The rational design of these molecules is important in atomic and molecular-scale manipulation to advance the development of molecular machines, as well as for a better understanding of self-assembly, diffusion and desorption processes. Here, we introduce the molecular design and construction of a collection of minimalistic nanocars. They feature an anthracene chassis and four benzene derivatives as wheels. After sublimation and adsorption on an Au(111) surface, we show controlled and fast manipulation of the nanocars along the surface using the tip of a scanning tunneling microscope (STM). The mechanism behind the successful displacement is the induced dipole created over the nanocar by the STM tip. We utilized carbon monoxide functionalized tips both to avoid decomposition and accidentally picking the nanocars up during the manipulation. This strategy allowed thousands of maneuvers to successfully win the Nanocar Race II championship.
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Affiliation(s)
- Ana Barragán
- IMDEA Nanoscience Institute C/, Faraday 9, Campus de Cantoblanco, 28049, Madrid, Spain
| | - Tomás Nicolás-García
- IMDEA Nanoscience Institute C/, Faraday 9, Campus de Cantoblanco, 28049, Madrid, Spain
| | - Koen Lauwaet
- IMDEA Nanoscience Institute C/, Faraday 9, Campus de Cantoblanco, 28049, Madrid, Spain
| | - Ana Sánchez-Grande
- IMDEA Nanoscience Institute C/, Faraday 9, Campus de Cantoblanco, 28049, Madrid, Spain.,Institute of Physics of the Czech Academy of Science, 16200, Praha, Czech Republic
| | - José I Urgel
- IMDEA Nanoscience Institute C/, Faraday 9, Campus de Cantoblanco, 28049, Madrid, Spain
| | - Jonas Björk
- Department of Physics, Chemistry and Biology, IFM, Linköping University, 58183, Linköping, Sweden
| | - Emilio M Pérez
- IMDEA Nanoscience Institute C/, Faraday 9, Campus de Cantoblanco, 28049, Madrid, Spain
| | - David Écija
- IMDEA Nanoscience Institute C/, Faraday 9, Campus de Cantoblanco, 28049, Madrid, Spain
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8
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Santos AL, Liu D, Reed AK, Wyderka AM, van Venrooy A, Li JT, Li VD, Misiura M, Samoylova O, Beckham JL, Ayala-Orozco C, Kolomeisky AB, Alemany LB, Oliver A, Tegos GP, Tour JM. Light-activated molecular machines are fast-acting broad-spectrum antibacterials that target the membrane. SCIENCE ADVANCES 2022; 8:eabm2055. [PMID: 35648847 PMCID: PMC9159576 DOI: 10.1126/sciadv.abm2055] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 04/14/2022] [Indexed: 06/01/2023]
Abstract
The increasing occurrence of antibiotic-resistant bacteria and the dwindling antibiotic research and development pipeline have created a pressing global health crisis. Here, we report the discovery of a distinctive antibacterial therapy that uses visible (405 nanometers) light-activated synthetic molecular machines (MMs) to kill Gram-negative and Gram-positive bacteria, including methicillin-resistant Staphylococcus aureus, in minutes, vastly outpacing conventional antibiotics. MMs also rapidly eliminate persister cells and established bacterial biofilms. The antibacterial mode of action of MMs involves physical disruption of the membrane. In addition, by permeabilizing the membrane, MMs at sublethal doses potentiate the action of conventional antibiotics. Repeated exposure to antibacterial MMs is not accompanied by resistance development. Finally, therapeutic doses of MMs mitigate mortality associated with bacterial infection in an in vivo model of burn wound infection. Visible light-activated MMs represent an unconventional antibacterial mode of action by mechanical disruption at the molecular scale, not existent in nature and to which resistance development is unlikely.
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Affiliation(s)
- Ana L. Santos
- Department of Chemistry, Rice University, Houston, TX 77005, USA
- IdISBA–Fundación de Investigación Sanitaria de las Islas Baleares, Palma, Spain
| | - Dongdong Liu
- Department of Chemistry, Rice University, Houston, TX 77005, USA
| | - Anna K. Reed
- Department of Chemistry, Rice University, Houston, TX 77005, USA
| | - Aaron M. Wyderka
- Department of Chemistry, Rice University, Houston, TX 77005, USA
| | | | - John T. Li
- Department of Chemistry, Rice University, Houston, TX 77005, USA
| | - Victor D. Li
- Department of Chemistry, Rice University, Houston, TX 77005, USA
| | - Mikita Misiura
- Department of Chemistry, Rice University, Houston, TX 77005, USA
| | - Olga Samoylova
- Department of Chemistry, Rice University, Houston, TX 77005, USA
| | - Jacob L. Beckham
- Department of Chemistry, Rice University, Houston, TX 77005, USA
| | | | | | - Lawrence B. Alemany
- Department of Chemistry, Rice University, Houston, TX 77005, USA
- Shared Equipment Authority, Rice University, Houston, TX 77005, USA
| | - Antonio Oliver
- IdISBA–Fundación de Investigación Sanitaria de las Islas Baleares, Palma, Spain
- Servicio de Microbiologia, Hospital Universitari Son Espases, Palma, Spain
| | - George P. Tegos
- Office of Research, Reading Hospital, Tower Health, 420 S. Fifth Avenue, West Reading, PA 19611, USA
| | - James M. Tour
- Department of Chemistry, Rice University, Houston, TX 77005, USA
- Smalley-Curl Institute, Rice University, Houston, TX 77005, USA
- Department of Materials Science and NanoEngineering, Rice University, Houston, TX 77005, USA
- NanoCarbon Center and the Welch Institute for Advanced Materials, Rice University, Houston, TX 77005, USA
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9
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Schied M, Prezzi D, Liu D, Jacobson P, Corni S, Tour JM, Grill L. Inverted Conformation Stability of a Motor Molecule on a Metal Surface. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2022; 126:9034-9040. [PMID: 35686222 PMCID: PMC9169611 DOI: 10.1021/acs.jpcc.2c00406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 04/28/2022] [Indexed: 05/02/2023]
Abstract
Molecular motors have been intensely studied in solution, but less commonly on solid surfaces that offer fixed points of reference for their motion and allow high-resolution single-molecule imaging by scanning probe microscopy. Surface adsorption of molecules can also alter the potential energy surface and consequently preferred intramolecular conformations, but it is unknown how this affects motor molecules. Here, we show how the different conformations of motor molecules are modified by surface adsorption using a combination of scanning tunneling microscopy and density functional theory. These results demonstrate how the contact of a motor molecule with a solid can affect the energetics of the molecular conformations.
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Affiliation(s)
- Monika Schied
- Department
of Physical Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Deborah Prezzi
- Nanoscience
Institute of the National Research Council (CNR-NANO), via G. Campi 213/a, 41125 Modena, Italy
| | - Dongdong Liu
- Departments
of Chemistry and Materials Science and NanoEngineering, the Smalley
Institute for Nanoscale Science and Technology, the Welch Institute
for Advanced Materials, Rice University, Houston, Texas 77005, United States
| | - Peter Jacobson
- Department
of Physical Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Stefano Corni
- Nanoscience
Institute of the National Research Council (CNR-NANO), via G. Campi 213/a, 41125 Modena, Italy
- Dipartimento
di Scienze Chimiche, Università di
Padova, Padova I-35131, Italy
| | - James M. Tour
- Departments
of Chemistry and Materials Science and NanoEngineering, the Smalley
Institute for Nanoscale Science and Technology, the Welch Institute
for Advanced Materials, Rice University, Houston, Texas 77005, United States
| | - Leonhard Grill
- Department
of Physical Chemistry, University of Graz, Heinrichstraße 28, 8010 Graz, Austria
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10
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Majumdar A, Jansen TLC. Quantum-Classical Simulation of Molecular Motors Driven Only by Light. J Phys Chem Lett 2021; 12:5512-5518. [PMID: 34096725 PMCID: PMC8279737 DOI: 10.1021/acs.jpclett.1c00951] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 05/29/2021] [Indexed: 06/12/2023]
Abstract
Molecular motors that exhibit controlled unidirectional rotation provide great prospects for many types of applications, including nanorobotics. Existing rotational motors have two key components: photoisomerization around a π-bond followed by a thermally activated helical inversion, the latter being the rate-determining step. We propose an alternative molecular system in which the rotation is caused by the electric coupling of chromophores. This is used to engineer the excited state energy surface and achieve unidirectional rotation using light as the only input and avoid the slow thermally activated step, potentially leading to much faster operational speeds. To test the working principle, we employ quantum-classical calculations to study the dynamics of such a system. We estimate that motors built on this principle should be able to work on a subnanosecond time scale for such a full rotation. We explore the parameter space of our model to guide the design of a molecule that can act as such a motor.
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11
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Roy P, Sardjan AS, Cnossen A, Browne WR, Feringa BL, Meech SR. Excited State Structure Correlates with Efficient Photoconversion in Unidirectional Motors. J Phys Chem Lett 2021; 12:3367-3372. [PMID: 33784091 DOI: 10.1021/acs.jpclett.1c00710] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The design of unidirectional photomolecular motors demands a critical understanding of an ultrafast photochemical isomerization. An intermediate dark excited state mediates the reaction via a conical intersection (CI) with the ground state, but a correlation between molecular structure and photoisomerization efficiency has remained elusive. Here femtosecond stimulated Raman spectroscopy captures vibrational spectra of the dark state in a set of molecular motors bearing different substituents. A direct correlation between isomerization quantum yield, dark state lifetime, and excited state vibrational spectrum is found. Electron withdrawing substituents lead to activity in lower frequency modes, which we correlate with a pyramidalization distortion at the ethylenic axle occurring within 100 fs. This structure is not formed with an electron donating substituent, where the axle retains double bond character. Further structural reorganization is observed and assigned to excited state reorganization and charge redistribution on the sub-picosecond time scale. The correlation of the dark state structure with photoconversion performance suggests guidelines for developing new more efficient motor derivatives.
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Affiliation(s)
- Palas Roy
- School of Chemistry, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K
| | - Andy S Sardjan
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Arjen Cnossen
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Wesley R Browne
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Ben L Feringa
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Stephen R Meech
- School of Chemistry, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K
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12
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Abstract
Nanorobotics, which has long been a fantasy in the realm of science fiction, is now a reality due to the considerable developments in diverse fields including chemistry, materials, physics, information and nanotechnology in the past decades. Not only different prototypes of nanorobots whose sizes are nanoscale are invented for various biomedical applications, but also robotic nanomanipulators which are able to handle nano-objects obtain substantial achievements for applications in biomedicine. The outstanding achievements in nanorobotics have significantly expanded the field of medical robotics and yielded novel insights into the underlying mechanisms guiding life activities, remarkably showing an emerging and promising way for advancing the diagnosis & treatment level in the coming era of personalized precision medicine. In this review, the recent advances in nanorobotics (nanorobots, nanorobotic manipulations) for biomedical applications are summarized from several facets (including molecular machines, nanomotors, DNA nanorobotics, and robotic nanomanipulators), and the future perspectives are also presented.
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13
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Ni H, Lu Z, Xie Z. Transition-Metal-Free Cross-Coupling Reaction of Iodocarboranes with Terminal Alkynes Enabled by UV Light: Synthesis of 1-Alkynyl- o-Carboranes and Carborane-Fused Cyclics. J Am Chem Soc 2020; 142:18661-18667. [PMID: 33048535 DOI: 10.1021/jacs.0c08652] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A transition-metal-free coupling protocol between iodocarboranes and terminal alkynes enabled by light at room temperature has been developed, leading to the synthesis of a variety of 1-alkynyl-o-carboranes. Moreover, following this strategy, the introduction of 1-I-3-aryl-o-carboranes or 1-I-2-aryl-o-carboranes results in the formation of o-carborane-fused cyclics. Interestingly, when 1-I-3-(p-R-C6H4)-o-carboranes are chosen as coupling partners, unexpected R-group migration products are also isolated. On the basis of the results of control experiments and isolation of the key intermediates, a possible reaction mechanism is then proposed, involving the formation of spiro radical species.
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Affiliation(s)
- Hangcheng Ni
- Department of Chemistry and State Key Laboratory of Synthetic Chemistry, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China
| | - Zhenpin Lu
- Department of Chemistry and State Key Laboratory of Synthetic Chemistry, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China
| | - Zuowei Xie
- Department of Chemistry and State Key Laboratory of Synthetic Chemistry, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China
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14
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Kabir AMR, Inoue D, Kakugo A. Molecular swarm robots: recent progress and future challenges. SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS 2020; 21:323-332. [PMID: 32939158 PMCID: PMC7476543 DOI: 10.1080/14686996.2020.1761761] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Recent advancements in molecular robotics have been greatly contributed by the progress in various fields of science and technology, particularly in supramolecular chemistry, bio- and nanotechnology, and informatics. Yet one of the biggest challenges in molecular robotics has been controlling a large number of robots at a time and employing the robots for any specific task as flocks in order to harness emergent functions. Swarming of molecular robots has emerged as a new paradigm with potentials to overcome this hurdle in molecular robotics. In this review article, we comprehensively discuss the latest developments in swarm molecular robotics, particularly emphasizing the effective utilization of bio- and nanotechnology in swarming of molecular robots. Importance of tuning the mutual interaction among the molecular robots in regulation of their swarming is introduced. Successful utilization of DNA, photoresponsive molecules, and natural molecular machines in swarming of molecular robots to provide them with processing, sensing, and actuating ability is highlighted. The potentials of molecular swarm robots for practical applications by means of their ability to participate in logical operations and molecular computations are also discussed. Prospects of the molecular swarm robots in utilizing the emergent functions through swarming are also emphasized together with their future perspectives.
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Affiliation(s)
| | - Daisuke Inoue
- Faculty of Design, Department of Human Science, Kyushu University, Fukuoka, Japan
| | - Akira Kakugo
- Faculty of Science, Hokkaido University, Sapporo, Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Japan
- CONTACT Akira Kakugo Hokkaido University, Sapporo shi, Kita ku, Kita 10, Nishi 8, Science building-7, Room-215, Sapporo060-0810, Japan
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15
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García-López V, Liu D, Tour JM. Light-Activated Organic Molecular Motors and Their Applications. Chem Rev 2019; 120:79-124. [PMID: 31849216 DOI: 10.1021/acs.chemrev.9b00221] [Citation(s) in RCA: 114] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Molecular motors are at the heart of cellular machinery, and they are involved in converting chemical and light energy inputs into efficient mechanical work. From a synthetic perspective, the most advanced molecular motors are rotators that are activated by light wherein a molecular subcomponent rotates unidirectionally around an axis. The mechanical work produced by arrays of molecular motors can be used to induce a macroscopic effect. Light activation offers advantages over biological chemically activated molecular motors because one can direct precise spatiotemporal inputs while conducting reactions in the gas phase, in solution and in vacuum, while generating no chemical byproducts or waste. In this review, we describe the origins of the first light-activated rotary motors and their modes of function, the structural modifications that led to newer motor designs with optimized rotary properties at variable activation wavelengths. Presented are molecular motor attachments to surfaces, their insertion into supramolecular structures and photomodulating materials, their use in catalysis, and their action in biological environments to produce exciting new prospects for biomedicine.
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16
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Abstract
Directed motion at the nanoscale is a central attribute of life, and chemically driven motor proteins are nature's choice to accomplish it. Motivated and inspired by such bionanodevices, in the past few decades chemists have developed artificial prototypes of molecular motors, namely, multicomponent synthetic species that exhibit directionally controlled, stimuli-induced movements of their parts. In this context, photonic and redox stimuli represent highly appealing modes of activation, particularly from a technological viewpoint. Here we describe the evolution of the field of photo- and redox-driven artificial molecular motors, and we provide a comprehensive review of the work published in the past 5 years. After an analysis of the general principles that govern controlled and directed movement at the molecular scale, we describe the fundamental photochemical and redox processes that can enable its realization. The main classes of light- and redox-driven molecular motors are illustrated, with a particular focus on recent designs, and a thorough description of the functions performed by these kinds of devices according to literature reports is presented. Limitations, challenges, and future perspectives of the field are critically discussed.
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Affiliation(s)
- Massimo Baroncini
- CLAN-Center for Light Activated Nanostructures , Istituto ISOF-CNR , via Gobetti 101 , 40129 Bologna , Italy.,Dipartimento di Scienze e Tecnologie Agro-alimentari , Università di Bologna , viale Fanin 44 , 40127 Bologna , Italy
| | - Serena Silvi
- CLAN-Center for Light Activated Nanostructures , Istituto ISOF-CNR , via Gobetti 101 , 40129 Bologna , Italy.,Dipartimento di Chimica "G. Ciamician" , Università di Bologna , via Selmi 2 , 40126 Bologna , Italy
| | - Alberto Credi
- CLAN-Center for Light Activated Nanostructures , Istituto ISOF-CNR , via Gobetti 101 , 40129 Bologna , Italy.,Dipartimento di Scienze e Tecnologie Agro-alimentari , Università di Bologna , viale Fanin 44 , 40127 Bologna , Italy
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17
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Shahrokhi S, Shi J, Isichei B, Becker AT. Exploiting Nonslip Wall Contacts to Position Two Particles Using the Same Control Input. IEEE T ROBOT 2019. [DOI: 10.1109/tro.2019.2891487] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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18
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Li Y, Wang W, Liu F. Exploring the Mechanism of a Chiral N-Alkyl Imine-Based Light-Driven Molecular Rotary Motor at MS-CASPT2//CASSCF and MS-CASPT2//(TD) DFT Levels. Chemistry 2019; 25:4194-4201. [PMID: 30653755 DOI: 10.1002/chem.201806152] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Indexed: 11/10/2022]
Abstract
The working mechanism including the photoisomerization and thermal isomerization steps of a chiral N-alkyl imine-based motor synthesized by Lehn et al. are revealed by MS-CASPT2//CASSCF and MS-CASPT2//(TD-)DFT methods. For the photoisomerization process of the imine-based motor, it involves both the bright (π,π*) state and the dark (n,π*) state. In addition, the MECI has similar geometry and energy to the minimum of the S1 state, which shows that the process is barrierless and keeps the unidirectionality of rotation well; the result confirms the imine-based motor is a good candidate for a light-driven molecular rotary motor. For the thermal isomerization process of the imine-based motor, there are two even isomerization paths: one with the mechanism of the in-plane N inversion, the energy barriers of which are 29.6 kcal mol-1 at MS3-CASPT2//CAM-B3LYP level and 29.2 kcal mol-1 at MS3-CASPT2//CASSCF level; the other with the mechanism of ring inversion of the cycloheptatriene moiety, with energy barriers of 28.1 kcal mol-1 at MS3-CASPT2//CAM-B3LYP level and 18.1 kcal mol-1 at MS3-CASPT2//CASSCF level. According to the structural feature of the stator moiety, the imine molecule can be used as a two-step or a four-step light-driven rotary motor.
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Affiliation(s)
- Yuanying Li
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University, Xi'an, Shaanxi, 710119, P.R. China
| | - Wenliang Wang
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University, Xi'an, Shaanxi, 710119, P.R. China
| | - Fengyi Liu
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University, Xi'an, Shaanxi, 710119, P.R. China
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19
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Wang J, Oruganti B, Durbeej B. A Straightforward Route to Aromatic Excited States in Molecular Motors that Improves Photochemical Efficiency. CHEMPHOTOCHEM 2019. [DOI: 10.1002/cptc.201800268] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Jun Wang
- Division of Theoretical Chemistry, IFMLinköping University 581 83 Linköping Sweden
| | - Baswanth Oruganti
- Division of Theoretical Chemistry, IFMLinköping University 581 83 Linköping Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFMLinköping University 581 83 Linköping Sweden
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20
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Maurer RJ, Reuter K. Computational design of metal-supported molecular switches: transient ion formation during light- and electron-induced isomerisation of azobenzene. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2019; 31:044003. [PMID: 30523934 DOI: 10.1088/1361-648x/aaf0e1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
In molecular nanotechnology, a single molecule is envisioned to act as the basic building block of electronic devices. Such devices may be of special interest for organic photovoltaics, data storage, and smart materials. However, more often than not the molecular function is quenched upon contact with a conducting support. Trial-and-error-based decoupling strategies via molecular functionalisation and change of substrate have in many instances proven to yield unpredictable results. The adsorbate-substrate interactions that govern the function can be understood with the help of first-principles simulation. Employing dispersion-corrected density-functional theory (DFT) and linear expansion delta-self-consistent-field DFT, the electronic structure of a prototypical surface-adsorbed functional molecule, namely azobenzene adsorbed to (1 1 1) single crystal facets of copper, silver and gold, is investigated and the main reasons for the loss or survival of the switching function upon adsorption are identified. The light-induced switching ability of a functionalised derivative of azobenzene on Au(1 1 1) and azobenzene on Ag(1 1 1) and Au(1 1 1) is assessed based on the excited-state potential energy landscapes of their transient molecular ions, which are believed to be the main intermediates of the experimentally observed isomerisation reaction. We provide a rationalisation of the experimentally observed function or lack thereof that connects to the underlying chemistry of the metal-surface interaction and provides insights into general design strategies for complex light-driven reactions at metal surfaces.
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Affiliation(s)
- Reinhard J Maurer
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL, Coventry, United Kingdom
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21
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Wang J, Durbeej B. Molecular motors with high quantum efficiency and visible-light responsiveness: Meeting two challenges in one design. COMPUT THEOR CHEM 2019. [DOI: 10.1016/j.comptc.2018.12.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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22
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Soe WH, Durand C, Guillermet O, Gauthier S, de Rouville HPJ, Srivastava S, Kammerer C, Rapenne G, Joachim C. Surface manipulation of a curved polycyclic aromatic hydrocarbon-based nano-vehicle molecule equipped with triptycene wheels. NANOTECHNOLOGY 2018; 29:495401. [PMID: 30207539 DOI: 10.1088/1361-6528/aae0d9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
With a central curved chassis, a four-wheeled molecule-vehicle was deposited on a Au(111) surface and imaged at low temperature using a scanning tunneling microscope. The curved conformation of the chassis and the consequent moderate interactions of the four wheels with the surface were observed. The dI/dV constant current maps of the tunneling electronic resonances close to the Au(111) Fermi level were recorded to identify the potential energy entry port on the molecular skeleton to trigger and control the driving of the molecule. A lateral pushing mode of molecular manipulation and the consequent recording of the manipulation signals confirm how the wheels can step-by-step rotate while passing over the Au(111) surface native herringbone reconstructions. Switching a phenyl holding a wheel to the chassis was not observed for triggering a lateral molecular motion inelastically and without any mechanic push by the tip apex. This points out the necessity to encode the sequence of the required wheels action on the profile of the potential energy surface of the excited states to be able to drive a molecule-vehicle.
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Affiliation(s)
- W-H Soe
- CEMES, Université de Toulouse, CNRS, 29 Rue J. Marvig, BP 94347, F-31055 Toulouse Cedex, France. International Center for Materials Nanoarchitectonics (WPI-MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan
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23
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Wang J, Durbeej B. Toward Fast and Efficient Visible-Light-Driven Molecular Motors: A Minimal Design. ChemistryOpen 2018; 7:583-589. [PMID: 30083493 PMCID: PMC6070775 DOI: 10.1002/open.201800089] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Indexed: 12/16/2022] Open
Abstract
A key goal in the development of light-driven rotary molecular motors is to facilitate their usage in biology and medicine by shifting the required irradiation wavelengths from the UV regime to the nondestructive visible regime. Although some progress has been made toward this goal, most available visible-light-driven motors either have relatively low quantum yields or require that thermal steps follow the photoisomerizations that underlie the rotary motion. Here, a minimal design for visible-light-driven motors without these drawbacks is presented and evaluated on the basis of state-of-the-art quantum chemical calculations and molecular dynamics simulations. The design, featuring dihydropyridinium and cyclohexenylidene motifs and comprising only five conjugated double bonds, is found to produce a full 360° rotation through fast photoisomerizations (excited-state lifetimes of ≈170-250 fs) powered by photons with energies well below 3 eV.
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Affiliation(s)
- Jun Wang
- Division of Theoretical Chemistry, IFMLinköping UniversitySE-581 83LinköpingSweden
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFMLinköping UniversitySE-581 83LinköpingSweden
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24
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Kuwahara S, Suzuki Y, Sugita N, Ikeda M, Nagatsugi F, Harada N, Habata Y. Thermal E/Z Isomerization in First Generation Molecular Motors. J Org Chem 2018; 83:4800-4804. [DOI: 10.1021/acs.joc.7b03264] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Shunsuke Kuwahara
- Department of Chemistry, Faculty of Science, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
- Research Center for Materials with Integrated Properties, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
| | - Yuri Suzuki
- Department of Chemistry, Faculty of Science, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
| | - Naoya Sugita
- Department of Chemistry, Faculty of Science, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
| | - Mari Ikeda
- Education Center, Faculty of Engineering, Chiba Institute of Technology, 2-1-1 Shibazono, Narashino, Chiba 275-0023, Japan
| | - Fumi Nagatsugi
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba, Sendai, Miyagi 980-8577, Japan
| | - Nobuyuki Harada
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba, Sendai, Miyagi 980-8577, Japan
| | - Yoichi Habata
- Department of Chemistry, Faculty of Science, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
- Research Center for Materials with Integrated Properties, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
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25
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Runka T, Olszewska K, Fertsch P, Łapiński A, Jastrzebska I, Santillan R, Farfán N. Vibrational spectroscopic characterization of cyclic and acyclic molecular rotors with 1,4-diethynylphenylene-d 4 rotators. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 192:393-400. [PMID: 29195193 DOI: 10.1016/j.saa.2017.11.052] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Revised: 11/21/2017] [Accepted: 11/24/2017] [Indexed: 06/07/2023]
Abstract
The synthesis and characterization of acyclic and cyclic molecular rotors with 1,4-diethynylphenylene-d4 rotators are described. The ATR-FTIR and Raman spectra of acyclic rotor 3 and cyclic rotor 5E were measured and interpreted. A feature of ATR-FTIR spectrum of rotor 5E is a strong two-component band around 1730cm-1 attributed to symmetric and asymmetric stretching vibration of the carbonyl group, while this is not observed in rotor 3. Raman investigation in the wide temperature range of 350 - 10K was carried out. The splitting of Raman bands in the region of stretching vibration of CC double and triple bonds at 170 and 260K for rotor 5E is observed. The splitting of bands is due to changes in molecular structure.
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Affiliation(s)
- Tomasz Runka
- Faculty of Technical Physics, Institute of Materials Research and Quantum Engineering, Poznan University of Technology, Piotrowo 3, 60-965 Poznań, Poland.
| | - Karolina Olszewska
- Faculty of Technical Physics, Institute of Materials Research and Quantum Engineering, Poznan University of Technology, Piotrowo 3, 60-965 Poznań, Poland
| | - Piotr Fertsch
- Faculty of Technical Physics, Institute of Materials Research and Quantum Engineering, Poznan University of Technology, Piotrowo 3, 60-965 Poznań, Poland
| | - Andrzej Łapiński
- Institute of Molecular Physics, Polish Academy of Sciences, Smoluchowskiego 17, 60-179 Poznań, Poland
| | - Izabella Jastrzebska
- Institute of Chemistry, University of Białystok, Ciołkowskiego 1K, 15-254 Białystok, Poland
| | - Rosa Santillan
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del IPN, México D.F., Apdo. Postal 14-740, 07000, Mexico
| | - Norberto Farfán
- Facultad de Química, Departamento de Química Orgánica, Universidad Nacional Autónoma de México, 04510 Ciudad de México D.F., Mexico
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26
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Shahrokhi S, Lin L, Ertel C, Wan M, Becker AT. Steering a Swarm of Particles Using Global Inputs and Swarm Statistics. IEEE T ROBOT 2018. [DOI: 10.1109/tro.2017.2769094] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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27
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Kayal S, Roy K, Umapathy S. Femtosecond coherent nuclear dynamics of excited tetraphenylethylene: Ultrafast transient absorption and ultrafast Raman loss spectroscopic studies. J Chem Phys 2018; 148:024301. [DOI: 10.1063/1.5008726] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Surajit Kayal
- Inorganic and Physical Chemistry Department, Indian Institute of Science, Bangalore 560012, India
| | - Khokan Roy
- Inorganic and Physical Chemistry Department, Indian Institute of Science, Bangalore 560012, India
| | - Siva Umapathy
- Inorganic and Physical Chemistry Department, Indian Institute of Science, Bangalore 560012, India
- Department of Instrumentation and Applied Physics, Indian Institute of Science, Bangalore 560012, India
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28
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Soe WH, Shirai Y, Durand C, Yonamine Y, Minami K, Bouju X, Kolmer M, Ariga K, Joachim C, Nakanishi W. Conformation Manipulation and Motion of a Double Paddle Molecule on an Au(111) Surface. ACS NANO 2017; 11:10357-10365. [PMID: 28862430 DOI: 10.1021/acsnano.7b05314] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The molecular conformation of a bisbinaphthyldurene (BBD) molecule is manipulated using a low-temperature ultrahigh-vacuum scanning tunneling microscope (LT-UHV STM) on an Au(111) surface. BBD has two binaphthyl groups at both ends connected to a central durene leading to anti/syn/flat conformers. In solution, dynamic nuclear magnetic resonance indicated the fast interexchange between the anti and syn conformers as confirmed by density functional theory calculations. After deposition in a submonolayer on an Au(111) surface, only the syn conformers were observed forming small islands of self-assembled syn dimers. The syn dimers can be separated into syn monomers by STM molecular manipulations. A flat conformer can also be prepared by using a peculiar mechanical unfolding of a syn monomer by STM manipulations. The experimental STM dI/dV and theoretical elastic scattering quantum chemistry maps of the low-lying tunneling resonances confirmed the flat conformer BBD molecule STM production. The key BBD electronic states for a step-by-step STM inelastic excitation lateral motion on the Au(111) are presented requiring no mechanical interactions between the STM tip apex and the BBD. On the BBD molecular board, selected STM tip apex positions for this inelastic tunneling excitation enable the flat BBD to move controllably on Au(111) by a step of 0.29 nm per bias voltage ramp.
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Affiliation(s)
- We-Hyo Soe
- GNS and MANA Satellite, CEMES-CNRS , 29 Rue J. Marvig, BP 4347, 31055 Cedex Toulouse, France
| | | | - Corentin Durand
- GNS and MANA Satellite, CEMES-CNRS , 29 Rue J. Marvig, BP 4347, 31055 Cedex Toulouse, France
| | | | | | - Xavier Bouju
- GNS and MANA Satellite, CEMES-CNRS , 29 Rue J. Marvig, BP 4347, 31055 Cedex Toulouse, France
| | - Marek Kolmer
- Centre for Nanometer-Scale Science and Advanced Materials, NANOSAM, Faculty of Physics, Astronomy, and Applied Computer Science, Jagiellonian University , Łojasiewicza 11, PL 30-348 Krakow, Poland
| | - Katsuhiko Ariga
- Graduate School of Frontier Sciences, The University of Tokyo , Kashiwa 277-0827, Japan
| | - Christian Joachim
- GNS and MANA Satellite, CEMES-CNRS , 29 Rue J. Marvig, BP 4347, 31055 Cedex Toulouse, France
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29
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Oruganti B, Wang J, Durbeej B. Excited-State Aromaticity Improves Molecular Motors: A Computational Analysis. Org Lett 2017; 19:4818-4821. [DOI: 10.1021/acs.orglett.7b02257] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Baswanth Oruganti
- Division of Theoretical Chemistry,
IFM, Linköping University, SE-581 83 Linköping, Sweden
| | - Jun Wang
- Division of Theoretical Chemistry,
IFM, Linköping University, SE-581 83 Linköping, Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry,
IFM, Linköping University, SE-581 83 Linköping, Sweden
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30
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García-López V, Alemany LB, Chiang PT, Sun J, Chu PL, Martí AA, Tour JM. Synthesis of light-driven motorized nanocars for linear trajectories and their detailed NMR structural determination. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.05.063] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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31
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Müller K, Knebel A, Zhao F, Bléger D, Caro J, Heinke L. Switching Thin Films of Azobenzene‐Containing Metal–Organic Frameworks with Visible Light. Chemistry 2017; 23:5434-5438. [DOI: 10.1002/chem.201700989] [Citation(s) in RCA: 83] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Kai Müller
- Chemistry of Oxydic and Organic Interfaces Institute of Functional Interfaces Karlsruhe Institute of Technology (KIT) Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
| | - Alexander Knebel
- Institute for Physical Chemistry and Electrochemistry Leibniz University Hanover Callinstrasse 3a 30167 Hannover Germany
| | - Fangli Zhao
- Department of Chemistry Humboldt-Universität zu Berlin Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - David Bléger
- Department of Chemistry Humboldt-Universität zu Berlin Brook-Taylor-Strasse 2 12489 Berlin Germany
| | - Jürgen Caro
- Institute for Physical Chemistry and Electrochemistry Leibniz University Hanover Callinstrasse 3a 30167 Hannover Germany
| | - Lars Heinke
- Chemistry of Oxydic and Organic Interfaces Institute of Functional Interfaces Karlsruhe Institute of Technology (KIT) Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
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32
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Manzoor S, Sheckman S, Lonsford J, Kim H, Kim M, Becker A. Parallel Self-Assembly of Polyominoes under Uniform Control Inputs. IEEE Robot Autom Lett 2017. [DOI: 10.1109/lra.2017.2715402] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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33
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Wang J, Oruganti B, Durbeej B. Light-driven rotary molecular motors without point chirality: a minimal design. Phys Chem Chem Phys 2017; 19:6952-6956. [DOI: 10.1039/c6cp08484b] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Despite lacking a stereocenter, light-driven cyclohexenylidene-pyrrolinium molecular motors achieve unidirectional rotary motion through the asymmetry afforded by the puckered cyclohexenylidene.
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Affiliation(s)
- Jun Wang
- Division of Theoretical Chemistry
- IFM
- Linköping University
- SE-581 83 Linköping
- Sweden
| | - Baswanth Oruganti
- Division of Theoretical Chemistry
- IFM
- Linköping University
- SE-581 83 Linköping
- Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry
- IFM
- Linköping University
- SE-581 83 Linköping
- Sweden
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34
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Kassem S, van Leeuwen T, Lubbe AS, Wilson MR, Feringa BL, Leigh DA. Artificial molecular motors. Chem Soc Rev 2017; 46:2592-2621. [DOI: 10.1039/c7cs00245a] [Citation(s) in RCA: 539] [Impact Index Per Article: 77.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Artificial molecular motors take inspiration from motor proteins, nature's solution for achieving directional molecular level motion. An overview is given of the principal designs of artificial molecular motors and their modes of operation. We identify some key challenges remaining in the field.
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Affiliation(s)
- Salma Kassem
- School of Chemistry
- University of Manchester
- Manchester
- UK
| | - Thomas van Leeuwen
- Stratingh Institute for Chemistry
- University of Groningen
- 9747 AG Groningen
- The Netherlands
| | - Anouk S. Lubbe
- Stratingh Institute for Chemistry
- University of Groningen
- 9747 AG Groningen
- The Netherlands
| | | | - Ben L. Feringa
- Stratingh Institute for Chemistry
- University of Groningen
- 9747 AG Groningen
- The Netherlands
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35
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Ariga K, Mori T, Nakanishi W, Hill JP. Solid surface vs. liquid surface: nanoarchitectonics, molecular machines, and DNA origami. Phys Chem Chem Phys 2017; 19:23658-23676. [DOI: 10.1039/c7cp02280h] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Comparisons of science and technology between these solid and liquid surfaces would be a good navigation for current-to-future developments.
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Affiliation(s)
- Katsuhiko Ariga
- World Premier International (WPI) Research Centre for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba 305-0044
- Japan
- Graduate School of Frontier Science
| | - Taizo Mori
- World Premier International (WPI) Research Centre for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba 305-0044
- Japan
| | - Waka Nakanishi
- World Premier International (WPI) Research Centre for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba 305-0044
- Japan
| | - Jonathan P. Hill
- World Premier International (WPI) Research Centre for Materials Nanoarchitectonics (MANA)
- National Institute for Materials Science (NIMS)
- Tsukuba 305-0044
- Japan
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36
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Li Y, Liu F, Wang B, Su Q, Wang W, Morokuma K. Different conical intersections control nonadiabatic photochemistry of fluorene light-driven molecular rotary motor: A CASSCF and spin-flip DFT study. J Chem Phys 2016; 145:244311. [DOI: 10.1063/1.4972825] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Yuanying Li
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an, Shaanxi 710062, People’s Republic of China
| | - Fengyi Liu
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an, Shaanxi 710062, People’s Republic of China
| | - Bin Wang
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an, Shaanxi 710062, People’s Republic of China
| | - Qingqing Su
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an, Shaanxi 710062, People’s Republic of China
| | - Wenliang Wang
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an, Shaanxi 710062, People’s Republic of China
| | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan
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37
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Saywell A, Bakker A, Mielke J, Kumagai T, Wolf M, García-López V, Chiang PT, Tour JM, Grill L. Light-Induced Translation of Motorized Molecules on a Surface. ACS NANO 2016; 10:10945-10952. [PMID: 27783488 DOI: 10.1021/acsnano.6b05650] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Molecular machines are a key component in the vision of molecular nanotechnology and have the potential to transport molecular species and cargo on surfaces. The motion of such machines should be triggered remotely, ultimately allowing a large number of molecules to be propelled by a single source, with light being an attractive stimulus. Here, we report upon the photoinduced translation of molecular machines across a surface by characterizing single molecules before and after illumination. Illumination of molecules containing a motor unit results in an enhancement in the diffusion of the molecules. The effect vanishes if an incompatible photon energy is used or if the motor unit is removed from the molecule, revealing that the enhanced motion is due to the presence of the wavelength-sensitive motor in each molecule.
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Affiliation(s)
- Alex Saywell
- Department of Physical Chemistry, Fritz-Haber Institute of the Max-Planck Society , Berlin 14195, Germany
- School of Physics and Astronomy, The University of Nottingham , Nottingham NG7 2RD, United Kingdom
| | - Anne Bakker
- Department of Physical Chemistry, Fritz-Haber Institute of the Max-Planck Society , Berlin 14195, Germany
| | - Johannes Mielke
- Department of Physical Chemistry, Fritz-Haber Institute of the Max-Planck Society , Berlin 14195, Germany
| | - Takashi Kumagai
- Department of Physical Chemistry, Fritz-Haber Institute of the Max-Planck Society , Berlin 14195, Germany
| | - Martin Wolf
- Department of Physical Chemistry, Fritz-Haber Institute of the Max-Planck Society , Berlin 14195, Germany
| | - Víctor García-López
- Departments of Chemistry and Materials Science and NanoEngineering and the Smalley Institute for Nanoscale Science and Technology, Rice University , Houston, Texas 77005, United States
| | - Pinn-Tsong Chiang
- Departments of Chemistry and Materials Science and NanoEngineering and the Smalley Institute for Nanoscale Science and Technology, Rice University , Houston, Texas 77005, United States
| | - James M Tour
- Departments of Chemistry and Materials Science and NanoEngineering and the Smalley Institute for Nanoscale Science and Technology, Rice University , Houston, Texas 77005, United States
| | - Leonhard Grill
- Department of Physical Chemistry, Fritz-Haber Institute of the Max-Planck Society , Berlin 14195, Germany
- Department of Physical Chemistry, University of Graz , Heinrichstrasse 28, Graz 8010, Austria
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38
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Amatatsu Y. Computational Design of a Fluorene-Based Ethylenoid Bridged by Trimethylene Chain. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2016. [DOI: 10.1246/bcsj.20160161] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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39
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Oruganti B, Durbeej B. On the possibility to accelerate the thermal isomerizations of overcrowded alkene-based rotary molecular motors with electron-donating or electron-withdrawing substituents. J Mol Model 2016; 22:219. [PMID: 27553304 PMCID: PMC4995225 DOI: 10.1007/s00894-016-3085-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Accepted: 08/05/2016] [Indexed: 12/01/2022]
Abstract
We employ computational methods to investigate the possibility of using electron-donating or electron-withdrawing substituents to reduce the free-energy barriers of the thermal isomerizations that limit the rotational frequencies achievable by synthetic overcrowded alkene-based molecular motors. Choosing as reference systems one of the fastest motors known to date and two variants thereof, we consider six new motors obtained by introducing electron-donating methoxy and dimethylamino or electron-withdrawing nitro and cyano substituents in conjugation with the central olefinic bond connecting the two (stator and rotator) motor halves. Performing density functional theory calculations, we then show that electron-donating (but not electron-withdrawing) groups at the stator are able to reduce the already small barriers of the reference motors by up to 18 kJ mol(-1). This result outlines a possible strategy for improving the rotational frequencies of motors of this kind. Furthermore, exploring the origin of the catalytic effect, it is found that electron-donating groups exert a favorable steric influence on the thermal isomerizations, which is not manifested by electron-withdrawing groups. This finding suggests a new mechanism for controlling the critical steric interactions of these motors. Graphical Abstract The introduction of electron-donating groups in one of the fastest rotary molecular motors known to date is found to reduce the free-energy barriers of the thermal steps that limit the rotational frequencies by up to 18 kJ mol(-1).
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Affiliation(s)
- Baswanth Oruganti
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83, Linköping, Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83, Linköping, Sweden.
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40
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Quan Y, Tang C, Xie Z. Palladium catalyzed regioselective B-C(sp) coupling via direct cage B-H activation: synthesis of B(4)-alkynylated o-carboranes. Chem Sci 2016; 7:5838-5845. [PMID: 30034724 PMCID: PMC6024241 DOI: 10.1039/c6sc00901h] [Citation(s) in RCA: 83] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2016] [Accepted: 05/12/2016] [Indexed: 01/16/2023] Open
Abstract
Pd-catalyzed carboxylic acid guided regioselective alkynylation of cage B(4)-H bonds in o-carboranes has been achieved for the first time using two different catalytic systems. In the presence of 5 mol% Pd(OAc)2 and 3 equiv. of AgOAc, the reaction of 1-COOH-2-R1-C2B10H10 with R3SiC[triple bond, length as m-dash]CBr in ClCH2CH2Cl gives 4-(R3SiC[triple bond, length as m-dash]C)-2-R1-o-C2B10H10 in moderate to high yields. This reaction is compatible with alkynes possessing sterically bulky silyl groups such as iPr3Si or t BuMe2Si. Meanwhile, another catalytic system of Pd(OAc)2/AgOAc/K2HPO4 can catalyze the direct B(4)-alkynylation of 1-COOH-2-R1-C2B10H10 with terminal alkynes R2C[triple bond, length as m-dash]CH in moderate to high yields. The latter has a broader substrate scope from bulky silyl to aromatic to carboranyl substituents. Desilylation of the resultant products affords carboranyl acetylene 4-(HC[triple bond, length as m-dash]C)-2-R1-o-C2B10H10 which can undergo further transformations such as Sonogashira coupling, dimerization and click reactions. It is suggested that the above two catalytic systems may proceed via Pd(ii)-Pd(iv)-Pd(ii) and Pd(ii)-Pd(0)-Pd(ii) catalytic cycles, respectively. In addition, the silver salt is found to promote the decarboxylation reaction and thereby controls the mono-selectivity.
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Affiliation(s)
- Yangjian Quan
- Department of Chemistry , State Key Laboratory of Synthetic Chemistry , The Chinese University of Hong Kong , Shatin N. T. , Hong Kong , China .
| | - Cen Tang
- Department of Chemistry , State Key Laboratory of Synthetic Chemistry , The Chinese University of Hong Kong , Shatin N. T. , Hong Kong , China .
| | - Zuowei Xie
- Department of Chemistry , State Key Laboratory of Synthetic Chemistry , The Chinese University of Hong Kong , Shatin N. T. , Hong Kong , China .
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41
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Oruganti B, Wang J, Durbeej B. Computational Insight to Improve the Thermal Isomerisation Performance of Overcrowded Alkene-Based Molecular Motors through Structural Redesign. Chemphyschem 2016; 17:3399-3408. [DOI: 10.1002/cphc.201600766] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Revised: 08/18/2016] [Indexed: 11/06/2022]
Affiliation(s)
- Baswanth Oruganti
- Division of Theoretical Chemistry, IFM; Linköping University; 581 83 Linköping Sweden
| | - Jun Wang
- Division of Theoretical Chemistry, IFM; Linköping University; 581 83 Linköping Sweden
| | - Bo Durbeej
- Division of Theoretical Chemistry, IFM; Linköping University; 581 83 Linköping Sweden
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42
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Controllable Molecule Transport and Release by a Restorable Surface-tethered DNA nanodevice. Sci Rep 2016; 6:28292. [PMID: 27384943 PMCID: PMC4935947 DOI: 10.1038/srep28292] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2016] [Accepted: 06/01/2016] [Indexed: 01/05/2023] Open
Abstract
In this paper, we report a novel surface-tethered DNA nanodevice that may present three states and undergo conformational changes under the operation of pH. Besides, convenient regulation on the electrode surface renders the construction and operation of this DNA nanodevice restorable. To make full use of this DNA nanodevice, ferrocene (Fc) has been further employed for the fabrication of the molecular device. On one hand, the state switches of the DNA nanodevice can be characterized conveniently and reliably by the obtained electrochemical signals from Fc. On the other hand, β-cyclodextrin-ferrocene (β-CD-Fc) host-guest system can be introduced by Fc, which functionalizes this molecular device. Based on different electrochemical behaviors of β-CD under different states, this DNA nanodevice can actualize directional loading, transporting and unloading of β-CD in nanoscale. Therefore, this DNA nanodevice bares promising applications in controllable molecular transport and release, which are of great value to molecular device design.
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43
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Oruganti B, Fang C, Durbeej B. Computational design of faster rotating second-generation light-driven molecular motors by control of steric effects. Phys Chem Chem Phys 2016; 17:21740-51. [PMID: 26234787 DOI: 10.1039/c5cp02303c] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
We report a systematic computational investigation of the possibility to accelerate the rate-limiting thermal isomerizations of the rotary cycles of synthetic light-driven overcrowded alkene-based molecular motors through modulation of steric interactions. Choosing as a reference system a second-generation motor known to accomplish rotary motion in the MHz regime and using density functional theory methods, we propose a three-step mechanism for the thermal isomerizations of this motor and show that variation of the steric bulkiness of the substituent at the stereocenter can reduce the (already small) free-energy barrier of the rate-determining step by a further 15-17 kJ mol(-1). This finding holds promise for future motors of this kind to reach beyond the MHz regime. Furthermore, we demonstrate and explain why one particular step is kinetically favored by decreasing and another step is kinetically favored by increasing the steric bulkiness of this substituent, and identify a possible back reaction capable of impeding the rotary rate.
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Affiliation(s)
- Baswanth Oruganti
- Division of Theoretical Chemistry, IFM, Linköping University, SE-581 83 Linköping, Sweden.
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44
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García-López V, Jeffet J, Kuwahara S, Martí AA, Ebenstein Y, Tour JM. Synthesis and Photostability of Unimolecular Submersible Nanomachines: Toward Single-Molecule Tracking in Solution. Org Lett 2016; 18:2343-6. [PMID: 27124281 PMCID: PMC4877667 DOI: 10.1021/acs.orglett.6b00506] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
![]()
The
synthesis and photophysical properties of a series of photostable
unimolecular submersible nanomachines (USNs) are reported as a first
step toward the analysis of their trajectories in solution. The USNs
have a light-driven rotatory motor for propulsion in solution and
photostable cy5-COT fluorophores for their tracking. These cy5-COT
fluorophores are found to provide an almost 2-fold increase in photostability
compared to the previous USN versions and do not affect the rotation
of the motor.
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Affiliation(s)
| | - Jonathan Jeffet
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University , Ramat Aviv 69978, Israel
| | - Shunsuke Kuwahara
- Department of Chemistry, Faculty of Science, Toho University , 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan
| | | | - Yuval Ebenstein
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University , Ramat Aviv 69978, Israel
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45
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Ariga K, Li J, Fei J, Ji Q, Hill JP. Nanoarchitectonics for Dynamic Functional Materials from Atomic-/Molecular-Level Manipulation to Macroscopic Action. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2016; 28:1251-86. [PMID: 26436552 DOI: 10.1002/adma.201502545] [Citation(s) in RCA: 295] [Impact Index Per Article: 36.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2015] [Revised: 07/27/2015] [Indexed: 05/21/2023]
Abstract
Objects in all dimensions are subject to translational dynamism and dynamic mutual interactions, and the ability to exert control over these events is one of the keys to the synthesis of functional materials. For the development of materials with truly dynamic functionalities, a paradigm shift from "nanotechnology" to "nanoarchitectonics" is proposed, with the aim of design and preparation of functional materials through dynamic harmonization of atomic-/molecular-level manipulation and control, chemical nanofabrication, self-organization, and field-controlled organization. Here, various examples of dynamic functional materials are presented from the atom/molecular-level to macroscopic dimensions. These systems, including atomic switches, molecular machines, molecular shuttles, motional crystals, metal-organic frameworks, layered assemblies, gels, supramolecular assemblies of biomaterials, DNA origami, hollow silica capsules, and mesoporous materials, are described according to their various dynamic functions, which include short-term plasticity, long-term potentiation, molecular manipulation, switchable catalysis, self-healing properties, supramolecular chirality, morphological control, drug storage and release, light-harvesting, mechanochemical transduction, molecular tuning molecular recognition, hand-operated nanotechnology.
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Affiliation(s)
- Katsuhiko Ariga
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, 305-0044, Japan
| | - Junbai Li
- Beijing National Laboratory for Molecular Science, CAS Key Lab of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Science, Beijing, 100190, P. R. China
| | - Jinbo Fei
- Beijing National Laboratory for Molecular Science, CAS Key Lab of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Science, Beijing, 100190, P. R. China
| | - Qingmin Ji
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, 305-0044, Japan
| | - Jonathan P Hill
- World Premier International (WPI) Research Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, 305-0044, Japan
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46
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García-López V, Chiang PT, Chen F, Ruan G, Martí AA, Kolomeisky AB, Wang G, Tour JM. Unimolecular Submersible Nanomachines. Synthesis, Actuation, and Monitoring. NANO LETTERS 2015; 15:8229-39. [PMID: 26540377 PMCID: PMC4676417 DOI: 10.1021/acs.nanolett.5b03764] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2015] [Revised: 10/30/2015] [Indexed: 05/20/2023]
Abstract
Unimolecular submersible nanomachines (USNs) bearing light-driven motors and fluorophores are synthesized. NMR experiments demonstrate that the rotation of the motor is not quenched by the fluorophore and that the motor behaves in the same manner as the corresponding motor without attached fluorophores. No photo or thermal decomposition is observed. Through careful design of control molecules with no motor and with a slow motor, we found using single molecule fluorescence correlation spectroscopy that only the molecules with fast rotating speed (MHz range) show an enhancement in diffusion by 26% when the motor is fully activated by UV light. This suggests that the USN molecules give ∼9 nm steps upon each motor actuation. A non-unidirectional rotating motor also results in a smaller, 10%, increase in diffusion. This study gives new insight into the light actuation of motorized molecules in solution.
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Affiliation(s)
- Víctor García-López
- Department of Chemistry, Department of Chemical
and Biomolecular Engineering and Center for Theoretical Biological
Physics, Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
| | - Pinn-Tsong Chiang
- Department of Chemistry, Department of Chemical
and Biomolecular Engineering and Center for Theoretical Biological
Physics, Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
| | - Fang Chen
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Gedeng Ruan
- Department of Chemistry, Department of Chemical
and Biomolecular Engineering and Center for Theoretical Biological
Physics, Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
| | - Angel A. Martí
- Department of Chemistry, Department of Chemical
and Biomolecular Engineering and Center for Theoretical Biological
Physics, Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
- E-mail:
| | - Anatoly B. Kolomeisky
- Department of Chemistry, Department of Chemical
and Biomolecular Engineering and Center for Theoretical Biological
Physics, Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
- E-mail:
| | - Gufeng Wang
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States
- E-mail:
| | - James M. Tour
- Department of Chemistry, Department of Chemical
and Biomolecular Engineering and Center for Theoretical Biological
Physics, Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
- E-mail:
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47
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García-López V, Chu PLE, Chiang PT, Sun J, Martí AA, Tour JM. Synthesis of a Light-Driven Motorized Nanocar. ASIAN J ORG CHEM 2015. [DOI: 10.1002/ajoc.201500325] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
| | - Pin-Lei E. Chu
- Department of Chemistry; Rice University; Houston Texas 77005 USA
| | | | - Jiuzhi Sun
- Department of Chemistry; Rice University; Houston Texas 77005 USA
| | - Angel A. Martí
- Department of Chemistry; Rice University; Houston Texas 77005 USA
| | - James M. Tour
- Department of Chemistry; Rice University; Houston Texas 77005 USA
- Department of Materials Science and NanoEngineering; Rice University; Houston Texas 77005 USA
- Smalley Institute for Nanoscale Science & Technology; Rice University; Houston Texas 77005 USA
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48
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Godoy J, García-López V, Wang LY, Rondeau-Gagné S, Link S, Martí AA, Tour JM. Synthesis of a fluorescent BODIPY-tagged ROMP catalyst and initial polymerization-propelled diffusion studies. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.04.027] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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49
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Abstract
Once seldom encountered outside of a few laboratories, carboranes are now everywhere, playing a role in the development of a broad range of technologies encompassing organic synthesis, radionuclide handling, drug design, heat-resistant polymers, cancer therapy, nanomaterials, catalysis, metal-organic frameworks, molecular machines, batteries, electronic devices, and more. This perspective highlights selected examples in which the special attributes of carboranes and metallacarboranes are being exploited for targeted purposes in the laboratory and in the wider world.
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Affiliation(s)
- Russell N Grimes
- Department of Chemistry, University of Virginia, Charlottesville, VA 22901, USA.
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50
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Lee CL, Liebig T, Hecht S, Bléger D, Rabe JP. Light-induced contraction and extension of single macromolecules on a modified graphite surface. ACS NANO 2014; 8:11987-11993. [PMID: 25345562 DOI: 10.1021/nn505325w] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Synthetic rigid-rod polymers incorporating multiple azobenzene photoswitches in the backbone were deposited from solution onto a monolayer of octadecylamine covering the basal plane of graphite. Large contractions and extensions of the single macromolecules on the surface were induced by irradiation with UV and visible light, respectively, as visualized by scanning force microscopy. Upon contraction, the single polymer chains form more compact nanostructures and also may move across the surface, resembling a crawling movement. We attribute the efficiency of these processes to the low mechanical and electronic coupling between the surface and polymers, the high density of azobenzenes in their backbones, and their rigidity, allowing for maximized photodeformations. The visualization of on-surface motions of single macromolecules directly induced by light, as reported herein, could help promote the development of optomechanical nanosystems.
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Affiliation(s)
- Chien-Li Lee
- Department of Physics, ‡Department of Chemistry, and §IRIS Adlershof, Humboldt-Universität zu Berlin , 12489, Berlin, Germany
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