1
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Garrett NR, Fortenberry RC. Vibrational and Rovibrational Spectroscopic Data for the Ground and First-Excited States of Phosgene (COCl 2), Formic Acid (HCOOH), and Chloroformic Acid (ClCOOH). J Phys Chem A 2024; 128:7899-7906. [PMID: 39254190 DOI: 10.1021/acs.jpca.4c03889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/11/2024]
Abstract
While "black box" quantum chemical computations for the determination of rovibronic spectral data are not quite at hand, the present work utilizes the titular molecules to showcase how excited-state quantum chemical methods can be conjoined to quartic force field (QFF) anharmonic rovibrational treatments to provide novel and useful predictions for such data. This work employs hybrid QFFs with explicitly correlated coupled cluster theory along with the equation-of-motion formalism to generate harmonic force constants and time-dependent density functional theory (TD-DFT) to produce anharmonic force constants for the generation of electronically excited-state rovibrational spectral data, in effect, rovibronic spectral data. Specific spectroscopic results from this work show that the fundamental C═O stretch in phosgene as well as in cis- and trans-formic acid drop from the region of around 1800 cm-1 to close to 1100 cm-1 or less in the first excited states of each molecule. While such is expected for these n → π* excitations, this work provides quantitative predictions for these fundamental vibrational frequencies. The most notable theoretical result is that the TD-DFT-based QFFs can experience unexpected failures, and their inclusion in excited-state hybrid QFFs should require at least two functionals to be employed. The computation of DFT QFFs is relatively fast, and such a "doubling up" of the QFFs will not greatly increase the computational time.
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Affiliation(s)
- Noah R Garrett
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
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2
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Watrous AG, Fortenberry RC. The fundamental vibrational frequencies and spectroscopic constants of the C 2O 2H 2 isomers: molecules known in simulated interstellar ice analogues. Phys Chem Chem Phys 2024; 26:21260-21269. [PMID: 39076036 DOI: 10.1039/d4cp02201g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/31/2024]
Abstract
While trans-glyoxal may not be easily observable in astronomical sources through either IR or radioastronomy due to its C2h symmetry, its cis conformer along with the cyc-H2COCO epoxide isomer should be ready targets for astrochemical detection. The present quantum chemical study shows that not only are both molecular isomers strongly polar, they also have notable IR features and low isomerisation energies of 4.1 kcal mol-1 and 10.7 kcal mol-1, respectively. These three isomers along with two other C2O2H2 isomers have had their full set of fundamental vibrational frequencies and spectroscopic constants characterised herein. These isomers have previously been shown to occur in simulated astrophysical ices making them worthy targets of astronomical search. Furthermore, the hybrid quartic force field (QFF) approach utilized herein to produce the needed spectral data has a mean absolute percent error compared to the experimentally-available, gas phase fundamental vibrational frequencies of 0.6% and rotational constants to better than 0.1%. The hybrid QFF is defined from explicitly correlated coupled cluster theory at the singles, doubles, and perturbative triples level [CCSD(T)-F12b] including core electron correlation and a canonical CCSD(T) relativity correction for the harmonic (quadratic) terms in the QFF and simple CCSD(T)-F12b/cc-pVDZ energies for the cubic and quartic terms, the so-called "F12-TcCR+DZ QFF." This method is producing spectroscopically-accurate predictions for both fundamental vibrational frequencies and principal spectroscopic constants. Hence, the values computed in this work should be notably accurate and, hence, exceptionally useful to the spectroscopy and astrochemistry communities.
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3
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Fortenberry RC. Picking up Good Vibrations through Quartic Force Fields and Vibrational Perturbation Theory. J Phys Chem Lett 2024; 15:6528-6537. [PMID: 38875074 DOI: 10.1021/acs.jpclett.4c01089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2024]
Abstract
Quartic force fields (QFFs) define sparse potential energy surfaces (compared to semiglobal surfaces) that are the cheapest and easiest means of computing anharmonic vibrational frequencies, especially when utilized with second-order vibrational perturbation theory (VPT2). However, flat and shallow potential surfaces are exceedingly difficult for QFFs to treat through a combination of numerical noise in the often numerically computed derivatives and in competing energy factors in the composite energies often utilized to provide high-level spectroscopic predictions. While some of these issues can be alleviated with analytic derivatives, hybrid QFFs, and intelligent choices in coordinate systems, the best practice is for predicting good molecular vibrations via QFFs is to understand what they cannot do, and this manuscript documents such cases where QFFs may fail.
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Affiliation(s)
- Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
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4
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Firth RA, Palmer CZ, Francisco JS, Fortenberry RC. Rovibrational analysis of AlCO3, OAlO2, and HOAlO2 for possible atmospheric detection. J Chem Phys 2024; 160:214304. [PMID: 38832738 DOI: 10.1063/5.0212147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Accepted: 05/19/2024] [Indexed: 06/05/2024] Open
Abstract
The lack of observational data for the AlO molecule in the mesosphere/lower thermosphere may be due to ablated aluminum reacting quickly to form other species. Previously proposed reaction pathways show that aluminum could be ablated in the atmosphere from meteoritic activity, but there currently exist very limited spectroscopic data on the intermediates in these reactions, limiting the possible detection of said molecules. As such, rovibrational spectroscopic data are computed herein using quartic force field methodology at four different levels of theory for the neutral intermediates AlCO3, OAlO2, and HOAlO2. Each molecule exhibits multiple vibrational modes with large vibrational transition intensities. For instance, the C-O stretch (ν1) in AlCO3 has a harmonic intensity of 536 km mol-1, the Al-O stretch (ν2) in OAlO2 has an intensity of 678 km mol-1, and the out-of-plane torsion (ν9) in HOAlO2 has an intensity of 158 km mol-1. All three molecules have exceptionally large dipole moments of 6.27, 4.21, and 5.04 D, respectively. These properties indicate that all three molecules are good candidates for potential atmospheric observation utilizing vibrational and/or rotational spectroscopic techniques.
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Affiliation(s)
- Rebecca A Firth
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, USA
| | - C Zachary Palmer
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, USA
| | - Joseph S Francisco
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, USA
| | - Ryan C Fortenberry
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677, USA
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5
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Watrous AG, Davis MC, Fortenberry RC. Performance of EOM-CCSD(T)(a)*-Based Quartic Force Fields in Computing Fundamental, Anharmonic Vibrational Frequencies of Molecular Electronically Excited States with Application to the Ã1A″ State of :CCH 2 (Vinylidene). J Phys Chem A 2024; 128:2150-2161. [PMID: 38466814 DOI: 10.1021/acs.jpca.3c08168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Highly accurate anharmonic vibrational frequencies of electronically excited states are not as easily computed as their ground electronic state counterparts, but recently developed approximate triple excited state methods may be changing that. One emerging excited state method is equation of motion coupled cluster theory at the singles and doubles level with perturbative triples computed via the (a)* formalism, EOMEE-CCSD(T)(a)*. One of the most employed means for the ready computation of vibrational anharmonic frequencies for ground electronic states is second-order vibrational perturbation theory (VPT2), a theory based on quartic force fields (QFFs),fourth-order Taylor series expansions of the potential portion of the internuclear Watson Hamiltonian. The combination of these two is herein benchmarked for its performance for use as a means of computing rovibrational spectra of electronically excited states. Specifically, the EOMEE-CCSD(T)(a)* approach employing a complete basis set extrapolation along with core electron inclusion and relativity (the so-called "CcCR" approach) defining the QFF produces anharmonic fundamental vibrational frequencies within 2.83%, on the average, of reported gas-phase experimentally assigned values for the test set including the A ~ 1 A ″ states of HCF, HCCl, HSiF, HNO, and HPO. However, some states have exceptional accuracy in the fundamentals, most notably for ν2 of A ~ 1 A ″ HCCl in which the CcCR QFF value is within 1.8 cm-1 at 927.9 cm-1 (or 0.2%) of the experiment. Additionally, this approach produces rotational constants to, on the absolute average, within 0.41% of available experimental data, showcasing notable accuracy in the computation of rovibronic spectral data. Furthermore, utilizing a hybrid approach composed of harmonic CcCR force constants along with a set of simple EOMEE-CCSD(T)(a)*/aug-cc-pVQZ QFF cubic and quartic force constants is faster than using pure CcCR and better represents those modes that suffer from numerical instability in the anharmonic portion of the QFF, implying that this so-called "CcCR + QZ" QFF approach may be the best for future applications. Finally, complete, rovibrational spectral data are provided for A ~ 1 A 2 :CCH2, a molecule of potential astrochemical interest, in order to aid in its potential future experimental rovibronic characterization.
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Affiliation(s)
- Alexandria G Watrous
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Megan C Davis
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
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6
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Fortenberry RC. Quantum Chemistry and Astrochemistry: A Match Made in the Heavens. J Phys Chem A 2024; 128:1555-1565. [PMID: 38381079 DOI: 10.1021/acs.jpca.3c07601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Abstract
Quantum chemistry can uniquely answer astrochemical questions that no other technique can provide. Computations can be parallelized, automated, and left to run continuously providing exceptional molecular throughput that cannot be done through experimentation. Additionally, the granularity of the individual computations that are required of potential energy surfaces, reaction mechanism pathways, or other quantum chemically derived observables produces a unique mosaic that make up the larger whole. These pieces can be dissected for their individual contributions or evaluated in an ad hoc fashion for each of their roles in generating the larger whole. No other scientific approach is capable of reporting such fine-grained insights. Quantum chemistry also works from a bottom-up approach in providing properties directly from the desired molecule instead of a top-down perspective as required of experiment where molecules have to be linked to observed phenomena. Furthermore, modern quantum chemistry is well within the range of "chemical accuracy" and is approaching "spectroscopic accuracy." As such, the seemingly difficult questions asked by astrochemistry that would not be asked initially for any other application require quantum chemical reference data. While the results of quantum chemical computations are needed to interpret astrochemical observation, modeling, or laboratory experimentation, such hard questions, regardless of the original need to answer them, produce unique solutions. While questions in astrochemistry often require novel developments in and implementations of quantum chemistry as outlined herein, the applications of these solutions will stretch beyond astrochemistry and may yet impact fields much closer to Earth.
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Affiliation(s)
- Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, Oxford, Mississippi 38677-1848, United States
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7
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Koput J. Ab Initio Potential Energy Surface and Vibration-Rotation Energy Levels of Aluminum Monohydroxide. J Phys Chem A 2023; 127:8607-8614. [PMID: 37793006 PMCID: PMC10591505 DOI: 10.1021/acs.jpca.3c05635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 09/18/2023] [Indexed: 10/06/2023]
Abstract
The potential energy surface and vibration-rotation energy levels of aluminum monohydroxide in the X̃ 1A' electronic state have been determined from ab initio calculations. The equilibrium configuration of the AlOH molecule was found to be bent, although with a wide AlOH angle of 163° and a small barrier to linearity of just 4 cm-1. The AlOH molecule was definitely confirmed to be quasilinear. The predicted spectroscopic constants of the AlOH, AlOD, 26AlOH, and Al18OH isotopologues can be useful in a future analysis of high-resolution vibration-rotation spectra of these species.
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Affiliation(s)
- Jacek Koput
- Department of Chemistry, Adam Mickiewicz University, 61-614 Poznań, Poland
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8
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Esposito VJ, Palmer CZ, Fortenberry RC, Francisco JS. Spectroscopy and Photochemistry of OAlNO and Implications for New Metal Chemistry in the Atmosphere. J Phys Chem A 2023; 127:7618-7629. [PMID: 37647609 DOI: 10.1021/acs.jpca.3c04437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
A new aluminum-bearing species, OAlNO, which has the potential to impact the chemistry of the Earth's upper atmosphere, is characterized via high-level, ab initio, spectroscopic methods. Meteor-ablated aluminum atoms are quickly oxidized to aluminum oxide (AlO) in the mesosphere and lower thermosphere (MLT), where a steady-state layer of AlO then builds up. Concurrent formation of nitric oxide (NO) in the same region of the atmosphere will lead to the bimolecular formation of the OAlNO molecule. Molecular orbital analysis provides fundamental insights into the chemical bonding and energetic arrangement of the triplet (1 3A″) ground state and singlet (1 1A') excited-state species of OAlNO. Additionally, unpaired electrons on the terminal oxygen atom of triplet (1 3A″) OAlNO cause it to be reactive to atmospheric species, potentially impacting climate science and high-altitude chemistry. The triplet (1 3A″) ground-state species exhibits a large permanent dipole moment useful for rotational spectroscopic detection; however, similar rotational constants to the singlet (1 1A') excited-state species will hamper differentiation in a spectrum. Strong infrared intensities will assist in detection and discrimination of the different spin states and isomers. Repulsive electronic excited states of OAlNO will lead to photolysis of the Al-N bond and formation of various electronic states of AlO + NO through nonadiabatic pathways. Reaction through the OAlNO intermediate represents a means for the production of electronically excited AlO, leading to new chemistry in the atmosphere. Excitation to higher-lying electronic states will lead to fluorescence with a minor Stokes shift, useful for laboratory investigation. Such physical properties of this molecule will allow for new, unexplored chemical pathways in the MLT to be considered.
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Affiliation(s)
- Vincent J Esposito
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, United States
| | - C Zachary Palmer
- Department of Chemistry and Biochemistry, University of Mississippi, University Park, Mississippi 38677-1848, United States
| | - Ryan C Fortenberry
- Department of Chemistry and Biochemistry, University of Mississippi, University Park, Mississippi 38677-1848, United States
| | - Joseph S Francisco
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6243, United States
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9
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Franke PR, Stanton JF. Rotamers of Methanediol: Composite Ab Initio Predictions of Structures, Frequencies, and Rovibrational Constants. J Phys Chem A 2023; 127:924-937. [PMID: 36657011 DOI: 10.1021/acs.jpca.2c06686] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Geminal diols are known to be important intermediates in atmospheric ozonolysis and the aerosol cycle. Recently, the simplest member of this class, methanediol, was interrogated in the gas phase with infrared spectroscopy. To aid in future spectroscopic investigations of methanediol, including in the interstellar medium, we report fundamental frequencies and rovibrational constants for the two rotamers of this molecule using ab initio composite methods along with vibrational perturbation theory. Sensitivity of the predictions to the level of theory and the treatment of anharmonic resonances are carefully assessed. The OH stretching harmonic frequencies of both rotamers are particularly sensitive to the level of theory. The CH stretches of the Cs rotamer are sensitive to the treatment of anharmonic resonances with VPT2-based effective Hamiltonian models. Equilibrium bond distances and harmonic frequencies are converged conservatively to within 0.0005 Å and 3 cm-1, respectively. The effect of tunneling on the rotational constants is investigated with a 2D variational calculation, based on a relaxed hydroxyl torsional potential energy surface. Tunneling is found to be negligible in the lower energy C2 rotamer but should modify the rotational constants of the Cs rotamer on the order of MHz, giving rise to rotational line splittings of the same order. The rovibrational constants of the Cs rotamer are dominated by hydroxyl torsional effects, and here we see evidence for the breakdown of vibrational perturbation theory.
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Affiliation(s)
- Peter R Franke
- Department of Chemistry, University of Florida, Gainesville, Florida32611, United States
| | - John F Stanton
- Department of Chemistry, University of Florida, Gainesville, Florida32611, United States
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10
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Huang X, Schwenke DW, Freedman RS, Lee TJ. Ames-2021 CO 2 Dipole Moment Surface and IR Line Lists: Toward 0.1% Uncertainty for CO 2 IR Intensities. J Phys Chem A 2022; 126:5940-5964. [PMID: 36007245 DOI: 10.1021/acs.jpca.2c01291] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A highly accurate CO2 ab initio dipole moment surface (DMS), Ames-2021, is reported along with 12C16O2 infrared (IR) intensity comparisons approaching a 1-4‰ level of agreement and uncertainty. The Ames-2021 DMS was accurately fitted from CCSD(T) finite-field dipoles computed with the aug-cc-pVXZ (X = T, Q, 5) basis for C atom and the d-aug-cc-pVXZ (X = T, Q, 5) basis for O atoms, and extrapolated to the one particle basis set limit. Fitting σrms is 3.8 × 10-7 au for 4443 geometries below 15 000 cm-1. The corresponding IR intensity, SAmes-2021, are computed using the Ames-2 potential energy surface (PES), which is the best PES available for CO2. Compared to high accuracy IR studies for 2001i-00001 and 3001i-00001 bands, SAmes-2021 matches NIST experiment-based intensities [SNIST-HIT16 or SHIT20] to -1.0 ± 1.3‰, or matches DLR experiment-based intensities [SDLR-HIT16/UCL/Ames] to 1.9 ± 3.7‰. This indicates the systematic deviations and uncertainties have been significantly reduced in SAmes-2021. The SUCL2015 (or SHITRAN2016) have larger deviations (vs SDLR) and uncertainties (vs SDLR, SNIST) which are attributed to the less accurate Ames-1 PES adopted in UCL-296 line list calculation. The SAmes-2021 intensity of 12C16O2 and 13C16O2 is utilized to derive new absolute 13C/12C ratios for Vienna PeeDee Belemnite (VPDB) with uncertainty reduced by 1/3 or 2/3. Further evaluation of SAmes-2021 intensities are carried out on those CO2 bands discussed in the HITRAN2020 update paper. Consistent improvements and better accuracies are found in band-by-band analysis, except for those bands strongly affected by Coriolis couplings, or very weak bands measured with relatively larger experimental uncertainties. The Ames-2021 296 K IR line lists are generated for 13 CO2 isotopologues, with 18 000 cm-1 and S296 K > 1 × 10-31 cm/molecule cutoff and then combined with CDSD line positions (except 14C16O2). The Ames-2021 DMS and 296 K IR line lists represent a major improvement over previous CO2 theoretical IR intensity studies, including Ames-2016, UCL-296, and recent UCL DMS 2021 update. A real 1 permille level of agreement and uncertainty will definitely require both more accurate PES and more accurate DMS.
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Affiliation(s)
- Xinchuan Huang
- MS 245-6, Astrophysics Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States.,SETI Institute, 339 Bernardo Avenue, Suite 200, Mountain View, California 94043, United States
| | - David W Schwenke
- MS 258-2, NAS Facility, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - Richard S Freedman
- SETI Institute, 339 Bernardo Avenue, Suite 200, Mountain View, California 94043, United States.,MS 245-3, Planetary Systems Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - Timothy J Lee
- MS 245-3, Planetary Systems Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
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11
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Agbaglo DA, Cheng Q, Fortenberry RC, Stanton JF, DeYonker NJ. Theoretical Rovibrational Spectroscopy of Magnesium Tricarbide-Multireference Character Thwarts a Full Analysis of All Isomers. J Phys Chem A 2022; 126:4132-4146. [PMID: 35758849 DOI: 10.1021/acs.jpca.2c01340] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Magnesium tricarbide isomers are studied herein with coupled cluster theory and multireference configuration interaction to support their possible detection in astrochemical environments such as the circumstellar envelope surrounding the star IRC +10216 or in terrestrial laboratories. Magnesium-bearing species may abound in the interstellar medium (ISM), but only eight (MgNC, MgCN, HMgNC, MgC2H, MgC3N, MgC4H, MgC5N, and MgC6H) have been directly identified thus far. Several possible isomers for the related MgC3 system are explored in their singlet and triplet spin multiplicities. Overall, this work offers quantum chemical insight of rovibrational spectroscopic data for MgC3 using quartic force fields (QFFs) based on the CCSD(T) and CCSD(T)-F12 levels of theory at the complete basis set (CBS) limit. Additional corrections with small basis set CCSDT(Q) and scalar relativistic effects are also included in the analysis. Salient multireference character is found in the singlet diamond electronic state, which makes a definitive assignment of the ground state challenging. Nevertheless, coupled cluster-based composite energies and multireference configuration interaction both predict that the 1A1 diamond isomer is 1.6-2.2 kcal mol-1 lower in energy than the 3A1 diamond isomer. Furthermore, highly accurate binding energies of various isomers MgC3 are provided for comparison to photodetachment experiments. Dipole moments along with harmonic infrared intensities will guide efforts for astronomical and spectroscopic characterization.
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Affiliation(s)
- Donatus A Agbaglo
- Department of Chemistry, University of Memphis, Memphis, Tennessee 38151, United States
| | - Qianyi Cheng
- Department of Chemistry, University of Memphis, Memphis, Tennessee 38151, United States
| | - Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - John F Stanton
- Department of Chemistry and Physics, University of Florida, Gainesville, Florida 32611, United States
| | - Nathan J DeYonker
- Department of Chemistry, University of Memphis, Memphis, Tennessee 38151, United States
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12
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Palmer CZ, Fortenberry RC, Francisco JS. Spectral Signatures of Hydrogen Thioperoxide (HOSH) and Hydrogen Persulfide (HSSH): Possible Molecular Sulfur Sinks in the Dense ISM. Molecules 2022; 27:3200. [PMID: 35630675 PMCID: PMC9143799 DOI: 10.3390/molecules27103200] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 05/02/2022] [Accepted: 05/05/2022] [Indexed: 11/17/2022] Open
Abstract
For decades, sulfur has remained underdetected in molecular form within the dense interstellar medium (ISM), and somewhere a molecular sulfur sink exists where it may be hiding. With the discovery of hydrogen peroxide (HOOH) in the ISM in 2011, a natural starting point may be found in sulfur-bearing analogs that are chemically similar to HOOH: hydrogen thioperoxide (HOSH) and hydrogen persulfide (HSSH). The present theoretical study couples the accuracy in the anharmonic fundamental vibrational frequencies from the explicitly correlated coupled cluster theory with the accurate rotational constants provided by canonical high-level coupled cluster theory to produce rovibrational spectra for use in the potential observation of HOSH and HSSH. The ν6 mode for HSSH at 886.1 cm-1 is within 0.2 cm-1 of the gas-phase experiment, and the B0 rotational constant for HSSH of 6979.5 MHz is within 9.0 MHz of the experimental benchmarks, implying that the unknown spectral features (such as the first overtones and combination bands) provided herein are similarly accurate. Notably, a previous experimentally-attributed 2ν1 mode, at 7041.8 cm-1, has been reassigned to the ν1+ν5 combination band based on the present work's ν1+ν5 value at 7034.3 cm-1. The most intense vibrational transitions for each molecule are the torsions, with HOSH having a more intense transition of 72 km/mol compared to HSSH's intensity of 14 km/mol. Furthermore, HOSH has a larger net dipole moment of 1.60 D compared to HSSH's 1.15 D. While HOSH may be the more likely candidate of the two for possible astronomical observation via vibrational spectroscopy due to the notable difference in their intensities, both HSSH and HOSH have large enough net dipole moments to be detectable by rotational spectroscopy to discover the role these molecules may have as possible molecular sulfur sinks in the dense ISM.
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Affiliation(s)
- Charles Z. Palmer
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS 38677, USA;
| | - Ryan C. Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS 38677, USA;
| | - Joseph S. Francisco
- Department of Earth and Environmental Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA;
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13
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Rocha CMR, Linnartz H. High-level ab initio quartic force fields and spectroscopic characterization of C 2N . Phys Chem Chem Phys 2021; 23:26227-26240. [PMID: 34787132 DOI: 10.1039/d1cp03505c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
While it is now well established that large carbon chain species and radiative electron attachment (REA) are key ingredients triggering interstellar anion chemistry, the role played by smaller molecular anions, for which REA appears to be an unlikely formation pathway, is as yet elusive. Advancing this research undoubtedly requires the knowledge (and modeling) of their astronomical abundances which, for the case of C2N-, is largely hindered by a lack of accurate spectroscopic signatures. In this work, we provide such data for both ground -CCN-(3Σ-) and low-lying c-CNC-(1A1) isomers and their singly-substituted isotopologues by means of state-of-the-art rovibrational quantum chemical techniques. Their quartic force fields are herein calibrated using a high-level composite energy scheme that accounts for extrapolations to both one-particle and (approximate) -particle basis set limits, in addition to relativistic effects, with the final forms being subsequently subject to nuclear motion calculations. Besides standard spectroscopic attributes, the full set of computed properties includes fine and hyperfine interaction constants and can be readily introduced as guesses in conventional experimental data reduction analyses through effective Hamiltonians. On the basis of benchmark calculations performed anew for a minimal test set of prototypical triatomics and limited (low-resolution) experimental data for -CCN-(3Σ-), the target accuracies are determined to be better than 0.1% of experiment for rotational constants and 0.3% for vibrational fundamentals. Apart from laboratory investigations, the results here presented are expected to also prompt future astronomical surveys on C2N-. To this end and using the theoretically-predicted spectroscopic constants, the rotational spectra of both -CCN-(3Σ-) and c-CNC-(1A1) are derived and their likely detectability in the interstellar medium is further explored in connection with working frequency ranges of powerful astronomical facilities. Our best theoretical estimate places c-CNC-(1A1) at about 15.3 kcal mol-1 above the ground-state -CCN-(3Σ-) species.
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Affiliation(s)
- C M R Rocha
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands.
| | - H Linnartz
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA Leiden, The Netherlands.
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14
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Fortenberry RC, Francisco JS. Anharmonic fundamental vibrational frequencies and spectroscopic constants of the potential HSO 2 radical astromolecule. J Chem Phys 2021; 155:114301. [PMID: 34551550 DOI: 10.1063/5.0062560] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
The recent report that HSO2 is likely kinetically favored over the HOSO thermodynamic product in hydrogen addition to sulfur dioxide in simulated Venusian atmospheric conditions has led to the need for reference rotational, vibrational, and rovibrational spectral data for this molecule. While matrix-isolation spectroscopy has been able to produce vibrational frequencies for some of the vibrational modes, the full infrared to microwave spectrum of 1 2A' HSO2 is yet to be generated. High-level quantum chemical computations show in this work that the >2.5 D dipole moment of this radical makes it a notable target for possible radioastronomical observation. Additionally, the high intensity antisymmetric S-O stretch is computed here to be 1298.3 cm-1, a 13.9 cm-1 blueshift up from H2 matrix analysis. In any case, the full set of rotational and spectroscopic constants and anharmonic fundamental vibrational frequencies is provided in this work in order to help characterize HSO2 and probe its kinetic favorability.
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Affiliation(s)
- Ryan C Fortenberry
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677-1848, USA
| | - Joseph S Francisco
- Department of Earth and Environmental Science, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
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15
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Huang X, Schwenke DW, Lee TJ. What It Takes to Compute Highly Accurate Rovibrational Line Lists for Use in Astrochemistry. Acc Chem Res 2021; 54:1311-1321. [PMID: 33621060 DOI: 10.1021/acs.accounts.0c00624] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
ConspectusWe review the Best Theory + Reliable High-Resolution Experiment (BTRHE) strategy for obtaining highly accurate molecular rovibrational line lists with InfraRed (IR) intensities. The need for highly accurate molecular rovibrational line lists is twofold: (a) assignment of the many rovibrational lines for common stable molecules especially those that exhibit a large amplitude motion, such as NH3, or have a high density of states such as SO2; and (b) characterization of the atmospheres of exoplanets, which will be one of the main areas of research in astronomy in the coming decades. The first motivation arises due to the need to eliminate lines due to common molecules in an astronomical observation in order to identify lines from new molecules, while the second motivation arises due to the need to obtain accurate molecular opacities in order to characterize the atmosphere of an exoplanet. The BTRHE strategy first consists of using high-quality ab initio quantum-chemical methods to obtain a global potential energy surface (PES) and dipole moment surface (DMS) that contains the proper physics. The global PES is then refined using a subset of the reliable high-resolution experimental data. The refined PES then gives energy-level predictions to an accuracy similar to the reproduction accuracy of the experimental data used in the refinement step in the interpolation region (i.e., within the range of the experimental data used in the refinement step). The accuracy of the energy levels will slowly degrade as they are extrapolated to spectral regions beyond the high-resolution experimental data used in the refinement step. However, because the degradation is slow, the predicted energy levels can be used to assign new high-resolution experiments, and the data from these can then be used in a subsequent refinement step. In this way, the global PES eventually can yield highly accurate energy levels for all desired spectral regions including to very high energies and high J values. We show that IR intensities computed with the BTRHE rovibrational wave functions and the DMS can be very accurate provided one has minimized the fitting error of the DMS and tested the completeness of the DMS. Some examples of our work on NH3, CO2, and SO2 are given to highlight the usefulness of the BTRHE strategy and to provide ideas on how to further improve its predictive power in the future. In particular, it is shown how successive refinement steps, once new high-resolution data are available, can lead to PESs that yield highly accurate transition energies to larger spectral regions. The importance of including nonadiabatic corrections to reduce the J-dependence of errors for H-containing molecules is shown with work on NH3. Another very important aspect of the BTRHE approach is the consistency across isotopologues, which allows for highly accurate line lists for any isotopologue once one is obtained for the main isotopologue (which has more high-resolution data available for refinement).
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Affiliation(s)
- Xinchuan Huang
- SETI Institute, 189 Bernardo Avenue, Suite 200, Mountain View, California 94043, United States
- MS 245-6, Astrophysics Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - David W. Schwenke
- MS 258-2, NAS Facility, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - Timothy J. Lee
- MS245-3, Planetary Systems Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
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16
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Lee TJ, Fortenberry RC. The unsolved issue with out-of-plane bending frequencies for CC multiply bonded systems. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 248:119148. [PMID: 33293227 DOI: 10.1016/j.saa.2020.119148] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 10/26/2020] [Indexed: 06/12/2023]
Abstract
More than 30 years ago two groups independently identified a problem in the calculation of the out-of-plane bending (OPB) vibrational frequencies for the ethylene molecule using correlated electronic structure methods. Several studies have been done in the meantime to try and understand and resolve this issue. In so doing this problem has been found to be far more insidious than previously realized for acetylene-like and benzene-like molecules, which can become non-linear and non-planar, respectively. The one common feature that all molecules with this problem have is that they contain CC multiple bonds, and so this has been called the "CC multiple bond OPB frequency issue" or "the CC OPB problem." Various explanations for this problem have been advanced such as basis set superposition error, basis set incompleteness error, linear dependences in the basis set, proper balancing of the basis set between saturation and inclusion of higher angular momentum functions, etc. and possible solutions have arisen from these suggestions. All of these proposed solutions, however, amount to one main point connecting them all: modifying the one-particle basis set in some way. None of the explanations that have been advanced, however, really fit all of the data for all of the molecules where this problem has been identified, and importantly, none of these diagnostic tests have been applied to similar molecules where this issue does not appear. In this review, the studies over the last 30 plus years are discussed and relevant data from each of these is compared and contrasted. It is hoped that by collecting and analyzing the data from these studies a path forward to understanding and resolving this issue will become evident.
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Affiliation(s)
- Timothy J Lee
- MS245-3, Planetary Systems Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, CA 94035, USA.
| | - Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS 38677-1848, USA
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17
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Gardner MB, Westbrook BR, Fortenberry RC, Lee TJ. Highly-accurate quartic force fields for the prediction of anharmonic rotational constants and fundamental vibrational frequencies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 248:119184. [PMID: 33293226 DOI: 10.1016/j.saa.2020.119184] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 10/29/2020] [Accepted: 11/01/2020] [Indexed: 06/12/2023]
Abstract
The CcCR quartic force field (QFF) methodology is capable of computing B0 and C0 rotational constants to within 35 MHz (0.14%) of experiment for triatomic and larger molecules with at least two heavy atoms. Additionally, the same constants for molecules with four or more atoms agree to within 20 MHz (0.12%) of experiment for the current test set. This work also supports previous claims that the same QFF methodology can produce fundamental vibrational frequencies with a deviation less than 5.7 cm-1 from experiment. Consequently, this approach of augmenting complete basis set extrapolated energies with treatments of core electron correlation and scalar relativity produces some of the most accurate rovibrational spectroscopic data available.
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Affiliation(s)
- Mason B Gardner
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS 38677-1848, United States
| | - Brent R Westbrook
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS 38677-1848, United States
| | - Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS 38677-1848, United States.
| | - Timothy J Lee
- MS 245-3, NASA Ames Research Center, Moffett Field, CA 94035, United States
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18
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Fortenberry RC, DeYonker NJ. Rovibrational Quantum Chemical Treatment of Inorganic and Organometallic Astrochemicals. Acc Chem Res 2021; 54:271-279. [PMID: 33356121 DOI: 10.1021/acs.accounts.0c00631] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
ConspectusOur two groups have both independently and collaboratively been pushing quantum-chemical techniques to produce highly accurate predictions of anharmonic vibrational frequencies and spectroscopic constants for molecules containing atoms outside of the typical upper p block. Methodologies employ composite approaches, relying on various levels of coupled cluster theory-most often at the singles, doubles, and perturbative triples level-and quartic force field constructions of the potential portion of the intramolecular Watson Hamiltonian. Such methods are known to perform well for organic species, and we have extended this to molecules containing atoms outside of this realm.One notable atom that has received much attention in this application is magnesium. Mg is the second-most-abundant element in the Earth's mantle, and while molecules containing this element are among the confirmed astrochemicals, its further atomic abundance in the galaxy implies that many more molecules (both purely inorganic and organometallic) containing element 12 exist in astrophysical regions in chemical sizes between those of atoms and dust-sized nanocrystals. Our approach discussed herein is producing quality benchmarks and predicting novel data for magnesium-bearing molecules.The story is similar for Al and Si, which are also notably abundant in both rocky bodies and the universe at large. While Na, Sc, and Cu may not be as abundant as Mg, Al, and Si, molecules containing Na and transition metals have also previously been reported to be detected beyond the Earth. Consequently, the need to produce spectral reference data for molecules containing such atoms is growing. While several experimental groups (including, notably, the groups in Arizona, Boston, and France/Spain) have clearly led the way in detection of inorganic/organometallic molecules in space, computational support and even rational design can provide novel avenues for the detection of molecules containing atoms not typically studied in most laboratories. The application of quantum chemistry to other elements beyond carbon and its cronies at the top right of the periodic table promises a better understanding of the observable universe. It will also provide novel and fundamental chemical insights pushing the "central science" into new molecular territory.
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Affiliation(s)
- Ryan C. Fortenberry
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Nathan J. DeYonker
- Department of Chemistry, University of Memphis, Memphis, Tennessee 38152, United States
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19
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Dallas J, Flint A, Fortenberry RC. Solvation of HeH+ in neon atoms: Proton-bound complexes of mixed He and Ne. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2020.110927] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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20
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Fortenberry RC, Trabelsi T, Francisco JS. Anharmonic Frequencies and Spectroscopic Constants of OAlOH and AlOH: Strong Bonding but Unhindered Motion. J Phys Chem A 2020; 124:8834-8841. [PMID: 33044814 DOI: 10.1021/acs.jpca.0c07945] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The astrophysical buildup of premineral nanocrystals from atoms to the smallest network-covalent solids will require observations of various small molecules containing the most common elements in minerals including aluminum and oxygen. The present work utilizes high-level quantum chemical quartic force field (QFF) approaches to produce anharmonic vibrational frequencies and spectroscopic constants for such species. The computed Beff for the astrochemically known AlOH molecule at 15780.5 MHz is a mere 40 MHz above the experimental value implying that the Beff for OAlOH at 5580.9 MHz is similarly accurate. The additional 7.31 D dipole moment in OAlOH implies that this molecule is a viable target for interstellar observation. Unlike the other anharmonic vibrational frequencies reported in this work, the Al-O-H bending frequencies in both AlOH and OAlOH are poorly described in the present QFF results. However, this failing actually highlights the fact that these bends are exceptionally floppy yet with counterintuitive exceedingly strong bonding. The Al-O bond energies are 128.2 and 107.2 kcal/mol, respective of AlOH and OAlOH, while the barriers to linearity are meager 16.6 and 380.7 cm-1 (0.1 and 1.1 kcal/mol).
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Affiliation(s)
- Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Tarek Trabelsi
- Department of Earth and Environmental Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Joseph S Francisco
- Department of Earth and Environmental Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
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21
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Burton MA, Cheng Q, Halfen DT, Lane JH, DeYonker NJ, Ziurys LM. The structure of ScC 2 (X̃ 2A 1): A combined Fourier transform microwave/millimeter-wave spectroscopic and computational study. J Chem Phys 2020; 153:034304. [PMID: 32716169 DOI: 10.1063/5.0008746] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
Pure rotational spectra of Sc13C2 (X̃2A1) and Sc12C13C (X̃2A') have been measured using Fourier transform microwave/millimeter-wave methods. These molecules were synthesized in a DC discharge from the reaction of scandium vapor, produced via laser ablation, with 13CH4 or 13CH4/12CH4, diluted in argon. The NKa,Kc = 10,1 → 00,0, 20,2 → 10,1, 30,3 → 20,2, and 40,4 → 30,3 transitions in the frequency range of 14 GHz-61 GHz were observed for both species, each exhibiting hyperfine splittings due to the nuclear spins of 13C (I = 1/2) and/or Sc (I = 7/2). These data have been analyzed with an asymmetric top Hamiltonian, and rotational, spin-rotation, and hyperfine parameters have been determined for Sc13C2 and Sc12C13C. In addition, a quartic force field was calculated for ScC2 and its isotopologues using a highly accurate coupled cluster-based composite method, incorporating complete basis set extrapolation, scalar relativistic corrections, outer core and inner core electron correlation, and higher-order valence correlation effects. The agreement between experimental and computed rotational constants, including the effective constant (B + C), is ∼0.5% for all three isotopologues. This remarkable agreement suggests promise in predicting rotational spectra of new transition metal-carbon bearing molecules. In combination with previous work on Sc12C2, an accurate structure for ScC2 has been established using combined experimental (B, C) and theoretical (A) rotational constants. The radical is cyclic (or T-shaped) with r(Sc-C) = 2.048(2) Å, r(C-C) = 1.272(2) Å, and ∠(C-Sc-C) = 36.2(1)°. The experimental and theoretical results also suggest that ScC2 contains a C2 - moiety and is largely ionic.
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Affiliation(s)
- M A Burton
- Department of Chemistry and Biochemistry, Department of Astronomy, Steward Observatory, University of Arizona, 1305 E. 4th Street, Tucson, Arizona 85719, USA
| | - Q Cheng
- Department of Chemistry, University of Memphis, Memphis, Tennessee 38152, USA
| | - D T Halfen
- Department of Chemistry and Biochemistry, Department of Astronomy, Steward Observatory, University of Arizona, 1305 E. 4th Street, Tucson, Arizona 85719, USA
| | - J H Lane
- Department of Chemistry and Biochemistry, Department of Astronomy, Steward Observatory, University of Arizona, 1305 E. 4th Street, Tucson, Arizona 85719, USA
| | - N J DeYonker
- Department of Chemistry, University of Memphis, Memphis, Tennessee 38152, USA
| | - L M Ziurys
- Department of Chemistry and Biochemistry, Department of Astronomy, Steward Observatory, University of Arizona, 1305 E. 4th Street, Tucson, Arizona 85719, USA
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22
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Westbrook BR, Del Rio WA, Lee TJ, Fortenberry RC. Overcoming the out-of-plane bending issue in an aromatic hydrocarbon: the anharmonic vibrational frequencies of c-(CH)C 3H 2. Phys Chem Chem Phys 2020; 22:12951-12958. [PMID: 32478782 DOI: 10.1039/d0cp01889a] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The challenges associated with the out-of-plane bending problem in multiply-bonded hydrocarbon molecules can be mitigated in quartic force field analyses by varying the step size in the out-of-plane coordinates. Carbon is a highly prevalent element in astronomical and terrestrial environments, but this major piece of its spectra has eluded theoretical examinations for decades. Earlier explanations for this problem focused on method and basis set issues, while this work seeks to corroborate the recent diagnosis as a numerical instability problem related to the generation of the potential energy surface. Explicit anharmonic frequencies for c-(CH)C3H2+ are computed using a quartic force field and the CCSD(T)-F12b method with cc-pVDZ-F12, cc-pVTZ-F12, and aug-cc-pVTZ basis sets. The first of these is shown to offer accuracy comparable to that of the latter two with a substantial reduction in computational time. Additionally, c-(CH)C3H2+ is shown to have two fundamental frequencies at the onset of the interstellar unidentified infrared bands, at 5.134 and 6.088 μm or 1947.9 and 1642.6 cm-1, respectively. This suggests that the results in the present study should assist in the attribution of parts of these aromatic bands, as well as provide data in support of the laboratory or astronomical detection of c-(CH)C3H2+.
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Affiliation(s)
- Brent R Westbrook
- Department of Chemistry & Biochemistry, University of Mississippi, MS 38677-1848, USA.
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23
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Materese CK, Nuevo M, Sandford SA, Bera PP, Lee TJ. The Production and Potential Detection of Hexamethylenetetramine-Methanol in Space. ASTROBIOLOGY 2020; 20:601-616. [PMID: 32105506 DOI: 10.1089/ast.2019.2147] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Numerous laboratory studies of astrophysical ice analogues have shown that their exposure to ionizing radiation leads to the production of large numbers of new, more complex compounds, many of which are of astrobiological interest. We show here that the irradiation of astrophysical ice analogues containing H2O, CH3OH, CO, and NH3 yields quantities of hexamethylenetetramine-methanol (hereafter HMT-methanol; C7N4H14O) that are easily detectible in the resulting organic residues. This molecule differs from simple HMT, which is known to be abundant in similar ice photolysis residues, by the replacement of a peripheral H atom with a CH2OH group. As with HMT, HMT-methanol is likely to be an amino acid precursor. HMT has tetrahedral (Td) symmetry, whereas HMT-methanol has C1 symmetry. We report the computed expected infrared spectra for HMT and HMT-methanol obtained using ab initio quantum chemistry methods and show that there is a good match between the observed and computed spectra for regular HMT. Since HMT-methanol lacks the high symmetry of HMT, it produces rotational transitions that could be observed at longer wavelengths, although establishing the exact positions of these transitions may be challenging. It is likely that HMT-methanol represents an abundant member of a larger family of functionalized HMT molecules that may be present in cold astrophysical environments.
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Affiliation(s)
- Christopher K Materese
- NASA Ames Research Center, MS 245-6, Moffett Field, California 94035
- BAER Institute, NASA Research Park, MS 18-4, Moffett Field, California 94035
- NASA Goddard Space Flight Center, Code 691, Greenbelt, Maryland 20771
| | - Michel Nuevo
- NASA Ames Research Center, MS 245-6, Moffett Field, California 94035
- BAER Institute, NASA Research Park, MS 18-4, Moffett Field, California 94035
| | - Scott A Sandford
- NASA Ames Research Center, MS 245-6, Moffett Field, California 94035
| | - Partha P Bera
- NASA Ames Research Center, MS 245-6, Moffett Field, California 94035
- BAER Institute, NASA Research Park, MS 18-4, Moffett Field, California 94035
| | - Timothy J Lee
- NASA Ames Research Center, MS 245-3, Moffett Field, California 94035
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24
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Westbrook BR, Fortenberry RC. Anharmonic Frequencies of (MO) 2 and Related Hydrides for M = Mg, Al, Si, P, S, Ca, and Ti and Heuristics for Predicting Anharmonic Corrections of Inorganic Oxides. J Phys Chem A 2020; 124:3191-3204. [PMID: 32212705 DOI: 10.1021/acs.jpca.0c01609] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The low-frequency vibrational fundamentals of D2h inorganic oxides are readily modeled by heuristic scaling factors at fractions of the computational cost compared to explicit anharmonic frequency computations. Oxygen and the other elements in the present study are abundant in geochemical environments and have the potential to aggregate into minerals in planet-forming regions or in the remnants of supernovae. Explicit quartic force field computations at the CCSD(T)-F12b/cc-pVTZ-F12 level of theory generate scaling factors that accurately predict the anharmonic frequencies with an average error of less than 1.0 cm-1 for both the metal-oxygen stretching frequencies and the torsion and antisymmetric stretching frequencies. Inclusion of hydrogen motions is less absolutely accurate but is similarly relatively predictive. The fundamental vibrational frequencies for the seven tetra-atomic inorganic oxides examined presently fall below 876 cm-1 and most of the hydrogenated species do as well. Additionally, ν6 for the SiO dimer is shown to have an intensity of 562 km mol-1, with each of the other molecules having one or more frequencies with intensities greater than 80 km mol-1, again with most in the low-frequency infrared range. These intensities and the frequencies computed in the present study should assist in laboratory characterization and potential interstellar or circumstellar observation.
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Affiliation(s)
- Brent R Westbrook
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
| | - Ryan C Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677-1848, United States
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25
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Bera PP, Huang X, Lee TJ. Highly Accurate Quartic Force Field and Rovibrational Spectroscopic Constants for the Azirinyl Cation (c-C 2NH 2+) and Its Isomers. J Phys Chem A 2020; 124:362-370. [PMID: 31860305 DOI: 10.1021/acs.jpca.9b10290] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The azirinyl cation is an aromatic cyclic molecule that is isoelectronic with cyclopropenylidene, c-C3H2, and c-C3H3+. Cyclopropenylidene has been shown to be ubiquitous, existing in many different astrophysical environments. Given the similar chemistry between C and N, and the relative abundances between C and N in astrophysical environments, it is expected that there should be aromatic ringed molecules that incorporate N in the ring, but as yet, no such molecule has been identified. To address this issue, the present study uses high levels of electronic structure theory to compute a highly accurate quartic force field (QFF) for the azirinyl cation and its two lowest lying isomers, the cyanomethyl and isocyanomethyl cations. The theoretical approach uses the singles and doubles coupled-cluster method that includes a perturbative correction for connected triple excitations, CCSD(T), together with extrapolation to the one-particle basis set limit and corrections for scalar relativity and core-correlation. The QFF is then used in a second-order vibrational perturbation theory analysis (VPT2) to compute the fundamental vibrational frequencies and rovibrational spectroscopic constants for all three C2NH2+ isomers. The reliability of the VPT2 vibrational frequencies is tested by comparison to vibrational configuration interaction (VCI) calculations, and excellent agreement is found between the two approaches. Fundamental vibrational frequencies and rovibrational spectroscopic constants for all singly substituted 13C, 15N, and D isotopologues are also reported. It is expected that the highly accurate spectroscopic data reported herein will be useful in the identification of these cations in high-resolution experimental or astronomical observations.
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Affiliation(s)
- Partha P Bera
- BAERI, Space Science and Astrobiology Division , NASA Ames Research Center , Moffett Field , Mountain View, California 94035 , United States.,Space Science and Astrobiology Division , NASA Ames Research Center , Moffett Field , Mountain View, California 94035 , United States
| | - Xinchuan Huang
- SETI Institute , 189 Bernardo Avenue, Suite 100 , Mountain View , California 94043 , United States.,Space Science and Astrobiology Division , NASA Ames Research Center , Moffett Field , Mountain View, California 94035 , United States
| | - Timothy J Lee
- Space Science and Astrobiology Division , NASA Ames Research Center , Moffett Field , Mountain View, California 94035 , United States
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26
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Trabelsi T, Davis MC, Fortenberry RC, Francisco JS. Spectroscopic investigation of [Al,N,C,O] refractory molecules. J Chem Phys 2019; 151:244303. [PMID: 31893878 DOI: 10.1063/1.5125268] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
As of yet, unexamined aluminum bearing molecules may help elucidate aluminum chemistry and associated refractory atom reactions in the interstellar medium. The flexibility of modern quantum chemistry in the construction and analysis of novel molecules makes it perfectly suited to analyze molecules of astrochemical significance. In this paper, high level ab initio electronic structure calculations using the coupled cluster CCSD(T) and explicitly correlated coupled cluster CCSD(T)-F12 methods with large basis sets extrapolated to the complete basis set limit have been performed on the various [Al,N,C,O] isomers. The anharmonic rotational and vibrational spectroscopic parameters for all isomers are produced with these same levels of theory via quartic force fields and vibrational perturbation theory in order to aid in their potential laboratory or even astrophysical identification. The most stable isomer is determined here to be the aluminum isocyanate radical with linear equilibrium geometry AlNCO (X1Σ+). The NCO antisymmetric stretch of AlNCO has an intensity of 1500 km/mol, which should greatly aid in its infrared detection in the region around 2305 cm-1. Additionally, the AlOCN isomer is relatively low lying, possesses a 5.12 D dipole moment, and has a notable kinetic stability, making it a viable candidate for astronomical observation. All isomers are characterized by small frequencies, which indicates that these are floppy molecules. Isomers with a terminal aluminum atom are especially floppy, with bending modes less than 100 cm-1.
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Affiliation(s)
- Tarek Trabelsi
- Department of Earth and Environmental Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Megan C Davis
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677-1848, USA
| | - Ryan C Fortenberry
- Department of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677-1848, USA
| | - Joseph S Francisco
- Department of Earth and Environmental Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
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27
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The performance of explicitly correlated wavefunctions [CCSD(T)-F12b] in the computation of anharmonic vibrational frequencies. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.136720] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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28
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Pandey A, Poirier B. Using phase-space Gaussians to compute the vibrational states of OCHCO+. J Chem Phys 2019; 151:014114. [DOI: 10.1063/1.5096770] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ankit Pandey
- Department of Chemistry and Biochemistry, Texas Tech University, P.O. Box 41061, Lubbock, Texas 79409-1061, USA
| | - Bill Poirier
- Department of Chemistry and Biochemistry, Texas Tech University, P.O. Box 41061, Lubbock, Texas 79409-1061, USA
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29
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Owens A, Yurchenko SN. Theoretical rotation-vibration spectroscopy of cis- and trans-diphosphene (P 2H 2) and the deuterated species P 2HD. J Chem Phys 2019; 150:194308. [PMID: 31117776 DOI: 10.1063/1.5092767] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Growing astronomical interest in phosphorous (P) chemistry is stimulating the search for new interstellar P-bearing molecules, a task requiring detailed knowledge of the microwave and infrared molecular spectrum. In this work, we present comprehensive rotation-vibration line lists of the cis- and trans-isomers of diphosphene (P2H2). The line lists have been generated using robust, first-principles methodologies based on newly computed, high-level ab initio potential energy and dipole moment surfaces. Transitions are considered between states with energies up to 8000 cm-1 and total angular momentum J ≤ 25. These are the first-ever line lists to be reported for P2H2, and they should significantly facilitate future spectroscopic characterization of this system. The deuterated species trans-P2HD and the effect of its dynamic dipole moment on the rovibrational spectrum are also discussed.
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Affiliation(s)
- Alec Owens
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
| | - Sergei N Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT London, United Kingdom
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30
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Morgan WJ, Fortenberry RC, Schaefer III HF, Lee TJ. Vibrational analysis of the ubiquitous interstellar molecule cyclopropenylidene (c-C3H2): the importance of numerical stability. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1589007] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- W. James Morgan
- Center for Computational Quantum Chemistry (CCQC), University of Georgia, Athens, GA, USA
| | - Ryan C. Fortenberry
- Department of Chemistry & Biochemistry, University of Mississippi, University, MS, USA
| | - Henry F. Schaefer III
- Center for Computational Quantum Chemistry (CCQC), University of Georgia, Athens, GA, USA
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31
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Xavier FGD, González MM, Varandas AJC. Global Potential Energy Surface for HO 2+ Using the CHIPR Method. J Phys Chem A 2019; 123:1613-1621. [PMID: 30707025 DOI: 10.1021/acs.jpca.8b12005] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
An analytical potential energy function for the title ion based on the combined hyperbolic inverse power representation (CHIPR) method and its characteristics are discussed at length in the present work. The curves of two diatomic ions, O2+ and OH+, are also obtained within the same approach. The model PES so obtained exhibits extraordinary flexibility in describing with subchemical accuracy even the weak topological features near the higher energy regions. Thus, structural properties predicted by the model may help spectroscopists who want to compare their experimental values with the ones from theory. The relaxed PESs in various coordinates have been calculated by relaxing the O2 bond distance using the present model, thus throwing light on all the possible isomers and their interconversions. The latest estimates of IR frequencies for three vibrational modes have been compared with the computed frequencies using the present model, and the agreement seems encouraging.
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Affiliation(s)
- F George D Xavier
- Department of Chemistry , University of Coimbra , 3004-525 Coimbra , Portugal
| | - M Martínez González
- Department of Chemistry , University of Coimbra , 3004-525 Coimbra , Portugal.,Facultad de Química , Universidad de La Habana , calle San Lázaro sn. , 10400 La Habana , Cuba
| | - A J C Varandas
- Department of Chemistry , University of Coimbra , 3004-525 Coimbra , Portugal.,School of Physics and Physical Engineering , Qufu Normal University , 273165 Qufu , China
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32
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A Small Molecule with PAH Vibrational Properties and a Detectable Rotational Spectrum: c-(C)C3H2, Cyclopropenylidenyl Carbene. ACTA ACUST UNITED AC 2019. [DOI: 10.3847/1538-4357/aaf85a] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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33
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Fortenberry RC, Lee TJ. Computational vibrational spectroscopy for the detection of molecules in space. ANNUAL REPORTS IN COMPUTATIONAL CHEMISTRY 2019. [DOI: 10.1016/bs.arcc.2019.08.006] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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34
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Fortenberry RC, Ascenzi D. ArCH 2 + : A Detectable Noble Gas Molecule. Chemphyschem 2018; 19:3388-3392. [PMID: 30370986 DOI: 10.1002/cphc.201800888] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2018] [Revised: 10/23/2018] [Indexed: 11/07/2022]
Abstract
The noble gas molecular cation, ArCH2 + , has been observed in mass spectrometry experiments, and the present work is providing high-level quantum chemical predictions for the vibrational and rotational spectroscopic data necessary to observe this molecule in situ in other laboratory conditions. The Ar-C stretch in this cation is a bright fundamental vibrational frequency that should be observable in the early regions of the far-infrared at 421.2 cm-1 for the universally most common 36 Ar isotope. The near-prolate nature of this molecule and its 2.91 D dipole moment should also make it distinguishable for submillimeter detection, as well. Furthermore, the Ar-C bond strength in ArCH2 + is greater than the global minimum for the dissociation of the experimentally known ArOH+ cation. As a result, the infrared spectrum of this simple organo-noble gas molecule is likely waiting to be observed and may already exist in the spectra of hydrocarbon cations in argon-matrix condensed phase experiments.
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Affiliation(s)
- Ryan C Fortenberry
- University of Mississippi, Department of Chemistry & Biochemistry, University, MS 38677-1848, U.S.A
| | - Daniela Ascenzi
- University of Trento, Department of Physics, Via Sommarive 14, 38050, Povo Trento, Italy
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35
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Dickerson CE, Bera PP, Lee TJ. Characterization of Azirine and Its Structural Isomers. J Phys Chem A 2018; 122:8898-8904. [PMID: 30350988 DOI: 10.1021/acs.jpca.8b07788] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The structures and spectroscopic properties of azirine (C2H3N), a nitrogen-containing three-membered cyclic molecule, and its isomers were studied with state-of-the-art ab initio quantum chemical methods. Azirine is isomeric with methyl cyanide (CH3CN) and methyl isocyanide (CH3NC)-both observed in the star-forming regions of Sgr B2. In this study, we characterize the stationary points on the potential energy surface, relative energies, dipole moments, rotational constants, and harmonic vibrational frequencies of the 2 H-azirine ( a), 1 H-2,2 H-azirine ( b, carbene isomer), and 1 H-azirine ( c) cyclic isomers. The CCSD(T) method and density functional theory (DFT), using the ωB97-X functional, along with Dunning's cc-pVXZ (X = T and Q) basis sets were used to optimize molecular geometries and calculate vibrational frequencies. The 2 H-azirine, an imine isomer ( a), was found to be the lowest in energy among the cyclic isomers, followed by the carbene isomer ( b), and last the 1 H-azirine, an enamine isomer ( c). All three cyclic isomers have a C s symmetry equilibrium structure. Azirines, if identified (three linear C2H3N isomers are already identified in the same source toward the galactic center, Sgr B2), would be the first nitrogen-containing cyclic molecules identified in an astronomical observation.
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Affiliation(s)
| | - Partha P Bera
- Space Science and Astrobiology Division , NASA Ames Research Center , Mountain View , California 94035 , United States.,Bay Area Environmental Research Institute , Moffett Field , California 94035 , United States
| | - Timothy J Lee
- Space Science and Astrobiology Division , NASA Ames Research Center , Mountain View , California 94035 , United States
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36
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Palmer CZ, Fortenberry RC. Rovibrational Considerations for the Monomers and Dimers of Magnesium Hydride and Magnesium Fluoride. J Phys Chem A 2018; 122:7079-7088. [DOI: 10.1021/acs.jpca.8b06611] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- C. Zachary Palmer
- Department of Chemistry & Biochemistry, Georgia Southern University, Statesboro, Georgia 30460, United States
| | - Ryan C. Fortenberry
- Department of Chemistry & Biochemistry, Georgia Southern University, Statesboro, Georgia 30460, United States
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677, United States
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37
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Fortenberry RC, Novak CM, Lee TJ. Rovibrational analysis of c-SiC 2H 2: Further evidence for out-of-plane bending issues in correlated methods. J Chem Phys 2018; 149:024303. [PMID: 30007394 DOI: 10.1063/1.5043166] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
While the issue of properly describing the out-of-plane bends (OPBs) in sp2 hybridized carbon atoms has reappeared for c-SiC2H2, the present quantum chemical study provides a new characterization of this molecule in order to aid in its potential detection in astrophysically relevant studies. Combining the previous, high-level approach with MP2-F12/aug-cc-pVDZ gives exceptionally accurate results for the comparison of experimental rotational constants and seemingly reliable vibrational frequencies. Most notably, the brightest fundamental vibrational frequency in c-SiC2H2, the b1 OPB, is predicted to lie at 673.4 cm-1, within 4.0 cm-1 of the previous matrix isolation experiment. As with c-C3H2, CCSD(T)-F12/aug-cc-pVTZ appears to be quite susceptible to over estimating the OPB anharmonic correction in c-SiC2H2 and may also do such for in-plane bends, as well. MP2-F12/aug-cc-pVDZ is less susceptible to these errors, and increasing the step size reduces this positive anharmonicity issue in both the cases. The OPB underestimation, however, likely still remains. Finally, estimates for some anharmonic vibrational frequencies are provided for the methylated form, c-SiC2HCH3, which is likely also a product of gas phase reactions of ·SiH with various alkynes.
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Affiliation(s)
- Ryan C Fortenberry
- Department of Chemistry and Biochemistry, University of Mississippi, University, Oxford, Mississippi 38677, USA
| | - Carlie M Novak
- Department of Chemistry and Biochemistry, Georgia Southern University, Statesboro, Georgia 30460, USA
| | - Timothy J Lee
- NASA Ames Research Center, MS 245-3 Moffett Field, California 94035 USA
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38
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Kohguchi H, Jusko P, Yamada KMT, Schlemmer S, Asvany O. High-resolution infrared spectroscopy of O 2H + in a cryogenic ion trap. J Chem Phys 2018; 148:144303. [PMID: 29655341 DOI: 10.1063/1.5023633] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The protonated oxygen molecule, O2H+, and its helium complex, He-O2H+, have been investigated by vibrational action spectroscopy in a cryogenic 22-pole ion trap. For the He-O2H+ complex, the frequencies of three vibrational bands have been determined by predissociation spectroscopy. The elusive O2H+ has been characterized for the first time by high-resolution rovibrational spectroscopy via its ν1 OH-stretching band. Thirty-eight rovibrational fine structure transitions with partly resolved hyperfine satellites were measured (56 resolved lines in total). Spectroscopic parameters were determined by fitting the observed lines with an effective Hamiltonian for an asymmetric rotor in a triplet electronic ground state, X̃3A'', yielding a band origin at 3016.73 cm-1. Based on these spectroscopic parameters, the rotational spectrum is predicted, but not yet detected.
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Affiliation(s)
- Hiroshi Kohguchi
- Department of Chemistry, Graduate School of Science, Hiroshima University, Kagamiyama 1-3-1, Higashi-Hiroshima 739-8526, Japan
| | - Pavol Jusko
- I. Physikalisches Institut, Universität zu Köln, Zülpicher Str. 77, 50937 Köln, Germany
| | | | - Stephan Schlemmer
- I. Physikalisches Institut, Universität zu Köln, Zülpicher Str. 77, 50937 Köln, Germany
| | - Oskar Asvany
- I. Physikalisches Institut, Universität zu Köln, Zülpicher Str. 77, 50937 Köln, Germany
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39
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Fortenberry RC, Trabelsi T, Francisco JS. Hydrogen Sulfide as a Scavenger of Sulfur Atomic Cation. J Phys Chem A 2018; 122:4983-4987. [DOI: 10.1021/acs.jpca.8b02923] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ryan C. Fortenberry
- Department of Chemistry & Biochemistry, Georgia Southern University, Statesboro, Georgia 30460, United States
- Department of Chemistry & Biochemistry, University of Mississippi, University, Mississippi 38677, United States
| | - Tarek Trabelsi
- Department of Chemistry, University of Nebraska—Lincoln, Lincoln, Nebraska 68588, United States
| | - Joseph S. Francisco
- Department of Chemistry, University of Nebraska—Lincoln, Lincoln, Nebraska 68588, United States
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40
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Fortenberry RC, Novak CM, Layfield JP, Matito E, Lee TJ. Overcoming the Failure of Correlation for Out-of-Plane Motions in a Simple Aromatic: Rovibrational Quantum Chemical Analysis of c-C 3H 2. J Chem Theory Comput 2018. [PMID: 29522337 DOI: 10.1021/acs.jctc.8b00164] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Truncated, correlated, wave function methods either produce imaginary frequencies (in the extreme case) or nonphysically low frequencies in out-of-plane motions for carbon and adjacent atoms when the carbon atoms engage in π bonding. Cyclopropenylidene is viewed as the simplest aromatic hydrocarbon, and the present as well as previous theoretical studies have shown that this simple molecule exhibits this behavior in the two out-of-plane bends (OPBs). This nonphysical behavior has been treated by removing nearly linear dependent basis functions according to eigenvalues of the overlap matrix, by employing basis sets where the spd space saturatation is balanced with higher angular momentum functions, by including basis set superposition/incompleteness error (BSSE/BSIE) corrections, or by combining standard correlation methods with explicitly correlated methods to produce hybrid potential surfaces. However, this work supports the recently described hypothesis that the OPB problem is both a method and a basis set effect. The correlated wave function's largest higher-order substitution term comes from a π → π* excitation where constructive interference of both orbitals artificially stabilizes the OPB. By employing schema to overcome this issue, the symmetric OPB ν9 is the predicted to be the second-brightest transition, and it will be observed very close to 775 cm-1. However, more work from the community is required to formulate better how carbon atoms interact with their adjacent atoms in π-bonded systems. Such bonds are ubiquitous in all of chemistry and beyond.
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Affiliation(s)
- Ryan C Fortenberry
- Georgia Southern University , Department of Chemistry & Biochemistry , Statesboro , Georgia 30460 , United States
| | - Carlie M Novak
- Georgia Southern University , Department of Chemistry & Biochemistry , Statesboro , Georgia 30460 , United States
| | - Joshua P Layfield
- University of St. Thomas , Department of Chemsitry , St. Paul , Minnesota 55105 , United States
| | - Eduard Matito
- Kimika Fakultatea , Euskal Herriko Unibertsitatea, UPV/EHU, and Donostia International Physics Center (DIPC) , P.K. 1072, 20080 Donostia , Euskadi , Spain.,Ikerbasque , Basque Foundation for Science , 48013 Bilbao , Spain
| | - Timothy J Lee
- MS 245-3 NASA Ames Research Center , Moffett Field , California 94035-1000 , United States
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41
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Morgan WJ, Matthews DA, Ringholm M, Agarwal J, Gong JZ, Ruud K, Allen WD, Stanton JF, Schaefer HF. Geometric Energy Derivatives at the Complete Basis Set Limit: Application to the Equilibrium Structure and Molecular Force Field of Formaldehyde. J Chem Theory Comput 2018; 14:1333-1350. [DOI: 10.1021/acs.jctc.7b01138] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- W. James Morgan
- Center for Computational Quantum Chemistry (CCQC), University of Georgia, Athens, Georgia 30602, United States
| | - Devin A. Matthews
- Institute for Computational Engineering and Sciences (ICES), University of Texas at Austin, Austin, Texas 78712, United States
| | - Magnus Ringholm
- Hylleraas Centre for Quantum Molecular Science, Department of Chemistry, University of Tromsø − The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Jay Agarwal
- Center for Computational Quantum Chemistry (CCQC), University of Georgia, Athens, Georgia 30602, United States
| | - Justin Z. Gong
- Department of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States
| | - Kenneth Ruud
- Hylleraas Centre for Quantum Molecular Science, Department of Chemistry, University of Tromsø − The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Wesley D. Allen
- Center for Computational Quantum Chemistry (CCQC), University of Georgia, Athens, Georgia 30602, United States
| | - John F. Stanton
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, United States
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry (CCQC), University of Georgia, Athens, Georgia 30602, United States
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42
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Czekner J, Cheung LF, Johnson EL, Fortenberry RC, Wang LS. A high-resolution photoelectron imaging and theoretical study of CP−and C2P−. J Chem Phys 2018; 148:044301. [DOI: 10.1063/1.5008570] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Joseph Czekner
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Ling Fung Cheung
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Eric L. Johnson
- Department of Chemistry and Biochemistry, Georgia Southern University, P.O. Box 8064, Statesboro, Georgia 30460, USA
| | - Ryan C. Fortenberry
- Department of Chemistry and Biochemistry, Georgia Southern University, P.O. Box 8064, Statesboro, Georgia 30460, USA
| | - Lai-Sheng Wang
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
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43
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Redondo P, Rayón VM, Barrientos C, Largo A. Structural Trends in Monoboronyl Compounds: Analysis of the Interaction of Second-Row Elements with BO. J Phys Chem A 2018; 122:398-409. [PMID: 29227645 DOI: 10.1021/acs.jpca.7b10482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A theoretical study of the monoboronyl compounds of second-row elements, [XBO] (X = Na, Si, P, S, Cl), has been carried out. It is observed that the preference for the XBO arrangement is higher when moving to the right of the period. In the case of sodium monoboronyl three minima were characterized, all lying rather close in energy: linear NaBO, linear NaOB, and an L-shaped structure. Linear NaBO and the L-shaped structure are nearly isoenergetic, whereas linear NaOB is located 2.11 kcal/mol above linear NaBO. The barrier for the conversion of the L-shaped structure into linear NaBO is about 5.1 kcal/mol, suggesting that both species could be potential targets for experimental detection. For silicon monoboronyl, two minima, linear SiBO and linear SiOB, are found, the latter lying about 13 kcal/mol above SiBO. The barrier for the isomerization of SiOB into SiBO is estimated to be 11.4 kcal/mol. For phosphorus, sulfur, and chlorine monoboronyls the linear XBO isomer is clearly the most stable one, and the barriers for the conversion into XOB species are relatively high, suggesting that quite likely the linear XBO isomer should be the main experimental target. All studied monoboronyls are relatively stable, with dissociation energies increasing from left to right of the second-row (69.8 kcal/mol for NaBO and 118.98 kcal/mol for ClBO). An analysis of the bonding for second-row monoboronyls has been carried out, emphasizing the different characteristics of the X-B and X-O bonds along the second row.
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Affiliation(s)
- Pilar Redondo
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid Campus Miguel Delibes , Paseo de Belén 7, 47011 Valladolid, Spain
| | - Víctor M Rayón
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid Campus Miguel Delibes , Paseo de Belén 7, 47011 Valladolid, Spain
| | - Carmen Barrientos
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid Campus Miguel Delibes , Paseo de Belén 7, 47011 Valladolid, Spain
| | - Antonio Largo
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid Campus Miguel Delibes , Paseo de Belén 7, 47011 Valladolid, Spain
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44
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Cheng Q, Fortenberry RC, DeYonker NJ. Towards a quantum chemical protocol for the prediction of rovibrational spectroscopic data for transition metal molecules: Exploration of CuCN, CuOH, and CuCCH. J Chem Phys 2017; 147:234303. [PMID: 29272934 DOI: 10.1063/1.5006931] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
High accuracy electronic structure computations for small transition metal-containing molecules have been a long term challenge. Due to coupling between electronic and nuclear wave functions, even experimental/theoretical identification of the ground electronic state requires tremendous efforts. Quartic force fields (QFFs) are effective ab initio tools for obtaining reliable anharmonic spectroscopic properties. However, the method that employs complete basis set limit extrapolation ("C"), consideration of core electron correlation ("cC"), and inclusion of scalar relativity ("R") to produce the energy points on the QFF, the composite CcCR methodology, has not yet been utilized to study inorganic spectroscopy. This work takes the CcCR methodology and adapts it to test whether such an approach is conducive for the closed-shell, copper-containing molecules CuCN, CuOH, and CuCCH. Gas phase rovibrational data are provided for all three species in their ground electronic states. Equilibrium geometries and many higher-order rovibrational properties show good agreement with earlier studies. However, there are notable differences, especially in computation of fundamental vibrational frequencies. Even with further additive corrections for the inner core electron correlation and coupled cluster with full single, double, and triple substitutions (CCSDT), the differences are still larger than expected indicating that more work should follow for predicting rovibrational properties of transition metal molecules.
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Affiliation(s)
- Qianyi Cheng
- Department of Chemistry, University of Memphis, Memphis, Tennessee 38152, USA
| | - Ryan C Fortenberry
- Department of Chemistry and Biochemistry, Georgia Southern University, Statesboro, Georgia 30460, USA
| | - Nathan J DeYonker
- Department of Chemistry, University of Memphis, Memphis, Tennessee 38152, USA
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45
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Fortenberry RC, Francisco JS, Lee TJ. Quantum Chemical Rovibrational Analysis of the HOSO Radical. J Phys Chem A 2017; 121:8108-8114. [DOI: 10.1021/acs.jpca.7b08121] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ryan C. Fortenberry
- Department of Chemistry & Biochemistry, Georgia Southern University, Statesboro, Georgia 30460, United States
| | - Joseph S. Francisco
- Department
of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, United States
| | - Timothy J. Lee
- NASA Ames Research Center, MS 245-3 Moffett Field, California 94035-1000, United States
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46
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Tchatchouang M, Nsangou M, Motapon O. Stability, metastability and spectroscopic properties of some low-lying electronic states of C 2 H − and N 2 H −. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2017.08.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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47
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Fortenberry RC, Lee TJ, Huang X. Towards completing the cyclopropenylidene cycle: rovibrational analysis of cyclic N 3+, CNN, HCNN +, and CNC . Phys Chem Chem Phys 2017; 19:22860-22869. [PMID: 28812071 DOI: 10.1039/c7cp04257d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The simple aromatic hydrocarbon, cyclopropenylidene (c-C3H2), is a known, naturally-occurring molecule. The question remains as to whether its isoelectronic, cyclic, fellow aromatics of c-N3+, c-CNN, HCNN+, and c-CNC- are as well. Each of these are exciting objects for observation of Titan, and the rotational constants and vibrational frequencies produced here will allow for remote sensing of Titan's atmosphere or other astrophysical or terrestrial sources. None of these four aromatic species are vibrationally strong absorbers/emitters, but the two ions, HCNN+ and c-CNC-, have dipole moments of greater than 3 D and 1 D, respectively, making them good targets for rotational spectroscopic observation. Each of these molecules is shown here to exhibit its own, unique vibrational properties, but the general trends put the vibrational behavior for corresponding fundamental modes within close ranges of one another, even producing nearly the same heavy atom, symmetric stretching frequencies for HCNN+ and c-C3H2 at 1600 cm-1. The c-N3+ cation is confirmed to be fairly unstable and has almost no intensity in its ν2 fundamental. Hence, it will likely remain difficult to characterize experimentally.
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Affiliation(s)
- Ryan C Fortenberry
- Georgia Southern University, Department of Chemistry and Biochemistry, Statesboro, GA 30460, USA.
| | - Timothy J Lee
- MS 245-3, NASA Ames Research Center, Moffett Field, CA 94035-1000, USA
| | - Xinchuan Huang
- SETI Institute, 189 Bernardo Avenue, Suite 100, Mountain View, CA 94043, USA
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48
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Fortenberry RC, Thackston R, Francisco JS, Lee TJ. Toward the laboratory identification of the not-so-simple NS2neutral and anion isomers. J Chem Phys 2017; 147:074303. [DOI: 10.1063/1.4985901] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Ryan C. Fortenberry
- Department of Chemistry and Biochemistry, Georgia Southern University, Statesboro, Georgia 30460-8064, USA
| | - Russell Thackston
- Department of Information Technology, Georgia Southern University, Statesboro, Georgia 30460-8150, USA
| | - Joseph S. Francisco
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, USA
| | - Timothy J. Lee
- MS 245-1, NASA Ames Research Center, Moffett Field, California 94035-1000, USA
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Fortenberry RC. The rovibrational nature of cis- and trans-HNNS: A possible nitrogen molecule progenitor. J Chem Phys 2017; 145:204302. [PMID: 27908132 DOI: 10.1063/1.4968036] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The HNNS radical has been promoted recently as a viable intermediate in the interstellar creation of the spectroscopically elusive nitrogen molecule. Any confirmation of this pathway or utilizing HNNS as a tracer of N2 depends upon the ability to observe the radical intermediate whether in the laboratory or in the interstellar medium. Established and accurate quantum chemical procedures are employed here to produce spectroscopic constants, fundamental vibrational frequencies, and intensities that can be utilized for any possible detection of HNNS. While trans-HNNS is confirmed here to be 3.0 kcal/mol lower in energy than cis-HNNS, the latter will be more readily observed rotationally due to its significantly larger dipole moment. The N-N bond in cis-HNNS is stronger than in trans-HNNS, and earlier work has suggested that cis-HNNS is more useful in the creation of N2 from NH and NS. Hence, the detection of cis-HNNS may be of greater value anyway. Furthermore, the N-N stretch in either conformer is also exceptionally bright and will occur in the mid-infrared with nearly 30 cm-1 separating the fundamentals of the two conformers. Finally, the low isomerization barrier can be affected significantly upon deuteration also making ND an interesting consideration as a starting material in the interstellar formation of N2.
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Affiliation(s)
- Ryan C Fortenberry
- Department of Chemistry and Biochemistry, Georgia Southern University, Statesboro, Georgia 30460, USA
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Vega-Vega Á, Barrientos C, Largo A. Metallic monoboronyl compounds: Prediction of their structure and comparison with the cyanide analogues. J Comput Chem 2017; 38:807-815. [DOI: 10.1002/jcc.24752] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Revised: 01/19/2017] [Accepted: 01/20/2017] [Indexed: 11/12/2022]
Affiliation(s)
- Álvaro Vega-Vega
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias; Universidad de Valladolid; Campus Miguel Delibes, Paseo de Belén 7 47011 Valladolid Spain
| | - Carmen Barrientos
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias; Universidad de Valladolid; Campus Miguel Delibes, Paseo de Belén 7 47011 Valladolid Spain
| | - Antonio Largo
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias; Universidad de Valladolid; Campus Miguel Delibes, Paseo de Belén 7 47011 Valladolid Spain
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