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For: Mojica FJM, Díez-Villaseñor C, García-Martínez J, Almendros C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology (Reading) 2009;155:733-740. [PMID: 19246744 DOI: 10.1099/mic.0.023960-0] [Citation(s) in RCA: 1057] [Impact Index Per Article: 66.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Number Cited by Other Article(s)
901
Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride DT. Conservation of streptococcal CRISPRs on human skin and saliva. BMC Microbiol 2014;14:146. [PMID: 24903519 PMCID: PMC4063239 DOI: 10.1186/1471-2180-14-146] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2014] [Accepted: 05/21/2014] [Indexed: 12/26/2022]  Open
902
Yaung SJ, Esvelt KM, Church GM. CRISPR/Cas9-mediated phage resistance is not impeded by the DNA modifications of phage T4. PLoS One 2014;9:e98811. [PMID: 24886988 PMCID: PMC4041780 DOI: 10.1371/journal.pone.0098811] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2014] [Accepted: 05/07/2014] [Indexed: 12/26/2022]  Open
903
Nuñez JK, Kranzusch PJ, Noeske J, Wright AV, Davies CW, Doudna JA. Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity. Nat Struct Mol Biol 2014;21:528-34. [PMID: 24793649 PMCID: PMC4075942 DOI: 10.1038/nsmb.2820] [Citation(s) in RCA: 342] [Impact Index Per Article: 31.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2014] [Accepted: 04/04/2014] [Indexed: 12/19/2022]
904
Charpentier E, Marraffini LA. Harnessing CRISPR-Cas9 immunity for genetic engineering. Curr Opin Microbiol 2014;19:114-119. [PMID: 25048165 PMCID: PMC4155128 DOI: 10.1016/j.mib.2014.07.001] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2014] [Accepted: 07/02/2014] [Indexed: 12/20/2022]
905
Yang CD, Chen YH, Huang HY, Huang HD, Tseng CP. CRP represses the CRISPR/Cas system in Escherichia coli: evidence that endogenous CRISPR spacers impede phage P1 replication. Mol Microbiol 2014;92:1072-91. [PMID: 24720807 DOI: 10.1111/mmi.12614] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/09/2014] [Indexed: 12/26/2022]
906
Hirose T, Mishima Y, Tomari Y. Elements and machinery of non-coding RNAs: toward their taxonomy. EMBO Rep 2014;15:489-507. [PMID: 24731943 PMCID: PMC4210095 DOI: 10.1002/embr.201338390] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2013] [Revised: 03/04/2014] [Accepted: 03/10/2014] [Indexed: 12/26/2022]  Open
907
Morris KV, Mattick JS. The rise of regulatory RNA. Nat Rev Genet 2014;15:423-37. [PMID: 24776770 DOI: 10.1038/nrg3722] [Citation(s) in RCA: 975] [Impact Index Per Article: 88.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
908
Fineran PC, Gerritzen MJH, Suárez-Diez M, Künne T, Boekhorst J, van Hijum SAFT, Staals RHJ, Brouns SJJ. Degenerate target sites mediate rapid primed CRISPR adaptation. Proc Natl Acad Sci U S A 2014;111:E1629-38. [PMID: 24711427 PMCID: PMC4000823 DOI: 10.1073/pnas.1400071111] [Citation(s) in RCA: 190] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
909
Wu X, Scott DA, Kriz AJ, Chiu AC, Hsu PD, Dadon DB, Cheng AW, Trevino AE, Konermann S, Chen S, Jaenisch R, Zhang F, Sharp PA. Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells. Nat Biotechnol 2014;32:670-6. [PMID: 24752079 DOI: 10.1038/nbt.2889] [Citation(s) in RCA: 726] [Impact Index Per Article: 66.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Accepted: 03/27/2014] [Indexed: 12/26/2022]
910
CasA mediates Cas3-catalyzed target degradation during CRISPR RNA-guided interference. Proc Natl Acad Sci U S A 2014;111:6618-23. [PMID: 24748111 DOI: 10.1073/pnas.1405079111] [Citation(s) in RCA: 163] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
911
Pawluk A, Bondy-Denomy J, Cheung VHW, Maxwell KL, Davidson AR. A new group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa. mBio 2014;5:e00896. [PMID: 24736222 PMCID: PMC3993853 DOI: 10.1128/mbio.00896-14] [Citation(s) in RCA: 201] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2014] [Accepted: 03/13/2014] [Indexed: 12/26/2022]  Open
912
Shmakov S, Savitskaya E, Semenova E, Logacheva MD, Datsenko KA, Severinov K. Pervasive generation of oppositely oriented spacers during CRISPR adaptation. Nucleic Acids Res 2014;42:5907-16. [PMID: 24728991 PMCID: PMC4027179 DOI: 10.1093/nar/gku226] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
913
Chylinski K, Makarova KS, Charpentier E, Koonin EV. Classification and evolution of type II CRISPR-Cas systems. Nucleic Acids Res 2014;42:6091-105. [PMID: 24728998 PMCID: PMC4041416 DOI: 10.1093/nar/gku241] [Citation(s) in RCA: 320] [Impact Index Per Article: 29.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
914
Kim H, Kim JS. A guide to genome engineering with programmable nucleases. Nat Rev Genet 2014;15:321-34. [PMID: 24690881 DOI: 10.1038/nrg3686] [Citation(s) in RCA: 802] [Impact Index Per Article: 72.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
915
Fichtner F, Urrea Castellanos R, Ülker B. Precision genetic modifications: a new era in molecular biology and crop improvement. PLANTA 2014;239:921-39. [PMID: 24510124 DOI: 10.1007/s00425-014-2029-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2013] [Accepted: 01/06/2014] [Indexed: 05/26/2023]
916
Gogleva AA, Gelfand MS, Artamonova II. Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs. BMC Genomics 2014;15:202. [PMID: 24628983 PMCID: PMC4004331 DOI: 10.1186/1471-2164-15-202] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2013] [Accepted: 03/04/2014] [Indexed: 08/30/2023]  Open
917
Zhang BC, Zhang J, Sun L. Streptococcus iniae SF1: complete genome sequence, proteomic profile, and immunoprotective antigens. PLoS One 2014;9:e91324. [PMID: 24621602 PMCID: PMC3951389 DOI: 10.1371/journal.pone.0091324] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2013] [Accepted: 02/10/2014] [Indexed: 01/06/2023]  Open
918
Molecular mechanisms of CRISPR-mediated microbial immunity. Cell Mol Life Sci 2014;71:449-65. [PMID: 23959171 PMCID: PMC3890593 DOI: 10.1007/s00018-013-1438-6] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Revised: 07/21/2013] [Accepted: 07/24/2013] [Indexed: 12/15/2022]
919
Small RNA-guided adaptive immunity. Phys Life Rev 2014;11:139-40; discussion 149-51. [DOI: 10.1016/j.plrev.2013.11.015] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2013] [Accepted: 11/29/2013] [Indexed: 11/19/2022]
920
Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems. Phys Life Rev 2014;11:113-34. [DOI: 10.1016/j.plrev.2013.11.002] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2013] [Accepted: 11/05/2013] [Indexed: 12/26/2022]
921
Biswas A, Fineran PC, Brown CM. Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs. ACTA ACUST UNITED AC 2014;30:1805-13. [PMID: 24578404 DOI: 10.1093/bioinformatics/btu114] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
922
Nishimasu H, Ran FA, Hsu PD, Konermann S, Shehata SI, Dohmae N, Ishitani R, Zhang F, Nureki O. Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell 2014;156:935-49. [PMID: 24529477 PMCID: PMC4139937 DOI: 10.1016/j.cell.2014.02.001] [Citation(s) in RCA: 1347] [Impact Index Per Article: 122.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2014] [Revised: 02/02/2014] [Accepted: 02/02/2014] [Indexed: 12/26/2022]
923
Bondy-Denomy J, Davidson AR. To acquire or resist: the complex biological effects of CRISPR-Cas systems. Trends Microbiol 2014;22:218-25. [PMID: 24582529 DOI: 10.1016/j.tim.2014.01.007] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2013] [Revised: 01/15/2014] [Accepted: 01/24/2014] [Indexed: 12/26/2022]
924
Plagens A, Tripp V, Daume M, Sharma K, Klingl A, Hrle A, Conti E, Urlaub H, Randau L. In vitro assembly and activity of an archaeal CRISPR-Cas type I-A Cascade interference complex. Nucleic Acids Res 2014;42:5125-38. [PMID: 24500198 PMCID: PMC4005679 DOI: 10.1093/nar/gku120] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
925
DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature 2014;507:62-7. [PMID: 24476820 PMCID: PMC4106473 DOI: 10.1038/nature13011] [Citation(s) in RCA: 1334] [Impact Index Per Article: 121.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Accepted: 12/23/2013] [Indexed: 12/14/2022]
926
Almendros C, Mojica FJM, Díez-Villaseñor C, Guzmán NM, García-Martínez J. CRISPR-Cas functional module exchange in Escherichia coli. mBio 2014;5:e00767-13. [PMID: 24473126 PMCID: PMC3903273 DOI: 10.1128/mbio.00767-13] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2013] [Accepted: 12/05/2013] [Indexed: 12/26/2022]  Open
927
Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems. mBio 2014;5:e00928-13. [PMID: 24473129 PMCID: PMC3903277 DOI: 10.1128/mbio.00928-13] [Citation(s) in RCA: 268] [Impact Index Per Article: 24.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
928
Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems. mBio 2014. [PMID: 24473129 DOI: 10.1128/mbio.00928-13.] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
929
Trevino AE, Zhang F. Genome editing using Cas9 nickases. Methods Enzymol 2014;546:161-74. [PMID: 25398340 DOI: 10.1016/b978-0-12-801185-0.00008-8] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
930
Song M, Kim YH, Kim JS, Kim H. Genome engineering in human cells. Methods Enzymol 2014;546:93-118. [PMID: 25398337 DOI: 10.1016/b978-0-12-801185-0.00005-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
931
Pyzocha NK, Ran FA, Hsu PD, Zhang F. RNA-guided genome editing of mammalian cells. Methods Mol Biol 2014;1114:269-77. [PMID: 24557909 DOI: 10.1007/978-1-62703-761-7_17] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
932
Bassett AR, Liu JL. CRISPR/Cas9 and genome editing in Drosophila. J Genet Genomics 2013;41:7-19. [PMID: 24480743 DOI: 10.1016/j.jgg.2013.12.004] [Citation(s) in RCA: 141] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2013] [Revised: 12/10/2013] [Accepted: 12/11/2013] [Indexed: 12/26/2022]
933
Spilman M, Cocozaki A, Hale C, Shao Y, Ramia N, Terns R, Terns M, Li H, Stagg S. Structure of an RNA silencing complex of the CRISPR-Cas immune system. Mol Cell 2013;52:146-52. [PMID: 24119404 DOI: 10.1016/j.molcel.2013.09.008] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2013] [Revised: 08/08/2013] [Accepted: 08/20/2013] [Indexed: 12/11/2022]
934
Manica A, Zebec Z, Steinkellner J, Schleper C. Unexpectedly broad target recognition of the CRISPR-mediated virus defence system in the archaeon Sulfolobus solfataricus. Nucleic Acids Res 2013;41:10509-17. [PMID: 24021627 PMCID: PMC3905844 DOI: 10.1093/nar/gkt767] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2013] [Revised: 08/03/2013] [Accepted: 08/05/2013] [Indexed: 12/26/2022]  Open
935
Lactobacillus buchneri genotyping on the basis of clustered regularly interspaced short palindromic repeat (CRISPR) locus diversity. Appl Environ Microbiol 2013;80:994-1001. [PMID: 24271175 DOI: 10.1128/aem.03015-13] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
936
Fonfara I, Le Rhun A, Chylinski K, Makarova KS, Lécrivain AL, Bzdrenga J, Koonin EV, Charpentier E. Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems. Nucleic Acids Res 2013;42:2577-90. [PMID: 24270795 PMCID: PMC3936727 DOI: 10.1093/nar/gkt1074] [Citation(s) in RCA: 249] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
937
Thyme SB, Boissel SJS, Arshiya Quadri S, Nolan T, Baker DA, Park RU, Kusak L, Ashworth J, Baker D. Reprogramming homing endonuclease specificity through computational design and directed evolution. Nucleic Acids Res 2013;42:2564-76. [PMID: 24270794 PMCID: PMC3936771 DOI: 10.1093/nar/gkt1212] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
938
Lemak S, Beloglazova N, Nocek B, Skarina T, Flick R, Brown G, Popovic A, Joachimiak A, Savchenko A, Yakunin AF. Toroidal structure and DNA cleavage by the CRISPR-associated [4Fe-4S] cluster containing Cas4 nuclease SSO0001 from Sulfolobus solfataricus. J Am Chem Soc 2013;135:17476-87. [PMID: 24171432 DOI: 10.1021/ja408729b] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
939
TALEN-based knockout library for human microRNAs. Nat Struct Mol Biol 2013;20:1458-64. [PMID: 24213537 DOI: 10.1038/nsmb.2701] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2013] [Accepted: 09/30/2013] [Indexed: 12/18/2022]
940
Larson MH, Gilbert LA, Wang X, Lim WA, Weissman JS, Qi LS. CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nat Protoc 2013;8:2180-96. [PMID: 24136345 PMCID: PMC3922765 DOI: 10.1038/nprot.2013.132] [Citation(s) in RCA: 848] [Impact Index Per Article: 70.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
941
Hou Z, Zhang Y, Propson NE, Howden SE, Chu LF, Sontheimer EJ, Thomson JA. Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis. Proc Natl Acad Sci U S A 2013;110:15644-9. [PMID: 23940360 PMCID: PMC3785731 DOI: 10.1073/pnas.1313587110] [Citation(s) in RCA: 500] [Impact Index Per Article: 41.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
942
CRISPR interference: a structural perspective. Biochem J 2013;453:155-66. [PMID: 23805973 PMCID: PMC3727216 DOI: 10.1042/bj20130316] [Citation(s) in RCA: 99] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
943
Postreplication targeting of transformants by bacterial immune systems? Trends Microbiol 2013;21:516-21. [PMID: 24021553 DOI: 10.1016/j.tim.2013.08.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2013] [Revised: 08/14/2013] [Accepted: 08/15/2013] [Indexed: 12/26/2022]
944
Westra ER, Semenova E, Datsenko KA, Jackson RN, Wiedenheft B, Severinov K, Brouns SJJ. Type I-E CRISPR-cas systems discriminate target from non-target DNA through base pairing-independent PAM recognition. PLoS Genet 2013;9:e1003742. [PMID: 24039596 PMCID: PMC3764190 DOI: 10.1371/journal.pgen.1003742] [Citation(s) in RCA: 166] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2012] [Accepted: 07/10/2013] [Indexed: 12/18/2022]  Open
945
Dy RL, Pitman AR, Fineran PC. Chromosomal targeting by CRISPR-Cas systems can contribute to genome plasticity in bacteria. Mob Genet Elements 2013;3:e26831. [PMID: 24251073 PMCID: PMC3827097 DOI: 10.4161/mge.26831] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2013] [Revised: 10/10/2013] [Accepted: 10/15/2013] [Indexed: 12/11/2022]  Open
946
Menke DB. Engineering subtle targeted mutations into the mouse genome. Genesis 2013;51:605-18. [PMID: 23913666 DOI: 10.1002/dvg.22422] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Revised: 07/25/2013] [Accepted: 07/26/2013] [Indexed: 12/13/2022]
947
Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis. Mol Cell 2013;50:488-503. [PMID: 23706818 DOI: 10.1016/j.molcel.2013.05.001] [Citation(s) in RCA: 207] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2013] [Revised: 04/11/2013] [Accepted: 04/29/2013] [Indexed: 12/26/2022]
948
DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array. Proc Natl Acad Sci U S A 2013;110:14396-401. [PMID: 23940313 DOI: 10.1073/pnas.1300108110] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
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Cradick TJ, Fine EJ, Antico CJ, Bao G. CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity. Nucleic Acids Res 2013;41:9584-92. [PMID: 23939622 PMCID: PMC3814385 DOI: 10.1093/nar/gkt714] [Citation(s) in RCA: 461] [Impact Index Per Article: 38.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
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Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system. Proc Natl Acad Sci U S A 2013;110:13904-9. [PMID: 23918387 DOI: 10.1073/pnas.1308335110] [Citation(s) in RCA: 954] [Impact Index Per Article: 79.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
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