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Fang H, Dong Y, Yue X, Hu J, Jiang S, Xu H, Wang Y, Su M, Zhang J, Zhang Z, Wang N, Chen X. The B-box zinc finger protein MdBBX20 integrates anthocyanin accumulation in response to ultraviolet radiation and low temperature. PLANT, CELL & ENVIRONMENT 2019; 42:2090-2104. [PMID: 30919454 DOI: 10.1111/pce.13552] [Citation(s) in RCA: 97] [Impact Index Per Article: 19.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Revised: 03/11/2019] [Accepted: 03/17/2019] [Indexed: 05/20/2023]
Abstract
Ultraviolet-B (UV-B) radiation and low temperature promote the accumulation of anthocyanins, which give apple skins their red colour. Although many transcription regulators have been characterized in the UV-B and low-temperature pathways, their interregulation and synergistic effects are not well understood. Here, a B-box transcription factor gene, MdBBX20, was characterized in apple and identified to promote anthocyanin biosynthesis under UV-B conditions in field experiments and when overexpressed in transgenic apple calli. The transcript level of MdBBX20 was significantly induced by UV-B. Specific G-box elements in the promoters of target genes were identified as interaction sites for MdBBX20. Further experimental interrogation of the UV-B signalling pathways showed that MdBBX20 could interact with MdHY5 in vitro and in vivo and that this interaction was required to significantly enhance the promoter activity of MdMYB1. MdBBX20 also responded to low temperature (14°C) with the participation of MdbHLH3, which directly bound a low temperature-response cis elements in the MdBBX20 promoter. These findings demonstrate the molecular mechanism by which MdBBX20 integrates low-temperature- and UV-B-induced anthocyanin accumulation in apple skin.
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Affiliation(s)
- Hongcheng Fang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Yuhui Dong
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Xuanxuan Yue
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Jiafei Hu
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Shenghui Jiang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Haifeng Xu
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Yicheng Wang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Mengyu Su
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Jing Zhang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Zongying Zhang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Nan Wang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Xuesen Chen
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong, 271018, China
- College of Horticulture Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
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Fang H, Dong Y, Yue X, Chen X, He N, Hu J, Jiang S, Xu H, Wang Y, Su M, Zhang J, Zhang Z, Wang N, Chen X. MdCOL4 Interaction Mediates Crosstalk Between UV-B and High Temperature to Control Fruit Coloration in Apple. PLANT & CELL PHYSIOLOGY 2019; 60:1055-1066. [PMID: 30715487 DOI: 10.1093/pcp/pcz023] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 01/28/2019] [Indexed: 05/04/2023]
Abstract
In many plants, anthocyanin biosynthesis is affected by environmental conditions. Ultraviolet-B (UV-B) radiation promotes anthocyanin accumulation and fruit coloration in apple skin, whereas high temperature suppresses these processes. In this study, we characterized a B-box transcription factor, MdCOL4, from 'Fuji' apple, and identified its role in anthocyanin biosynthesis by overexpressing its encoding gene in apple red callus. The expression of MdCOL4 was reduced by UV-B, but promoted by high temperature. We explored the regulatory relationship between heat shock transcription factors (HSFs) and MdCOL4, and found that MdHSF3b and MdHSF4a directly bound to the heat shock element cis-element of the MdCOL4 promoter. MdCOL4 interacted with MdHY5 to synergistically inhibit the expression of MdMYB1, and MdCOL4 directly bound to the promoters of MdANS and MdUFGT, which encode genes in the anthocyanin biosynthetic pathway, to suppress their expression. Our findings shed light on the molecular mechanism by which MdCOL4 suppresses anthocyanin accumulation in apple skin under UV-B and high temperature.
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Affiliation(s)
- Hongcheng Fang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Yuhui Dong
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Xuanxuan Yue
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Xiaoliu Chen
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Naibo He
- National Oceangraphic Center, Qingdao, China
| | - Jiafei Hu
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Shenghui Jiang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Haifeng Xu
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Yicheng Wang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Mengyu Su
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Jing Zhang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Zongying Zhang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Nan Wang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
| | - Xuesen Chen
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
- College of Horticulture Sciences, Shandong Agricultural University, Daizong Road No.61, Tai'an, Shandong, China
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Yadav A, Bakshi S, Yadukrishnan P, Lingwan M, Dolde U, Wenkel S, Masakapalli SK, Datta S. The B-Box-Containing MicroProtein miP1a/BBX31 Regulates Photomorphogenesis and UV-B Protection. PLANT PHYSIOLOGY 2019; 179:1876-1892. [PMID: 30723178 PMCID: PMC6446756 DOI: 10.1104/pp.18.01258] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 01/28/2019] [Indexed: 05/04/2023]
Abstract
The bZIP transcription factor ELONGATED HYPOCOTYL5 (HY5) represents a major hub in the light-signaling cascade both under visible and UV-B light. The mode of transcriptional regulation of HY5, especially under UV-B light, is not well characterized. B-BOX (BBX) transcription factors regulate HY5 transcription and also posttranscriptionally modulate HY5 to control photomorphogenesis under white light. Here, we identify BBX31 as a key signaling intermediate in visible and UV-B light signal transduction in Arabidopsis (Arabidopsis thaliana). BBX31 expression is induced by UV-B radiation in a fluence-dependent manner. HY5 directly binds to the promoter of BBX31 and regulates its transcript levels. Loss- and gain-of-function mutants of BBX31 indicate that it acts as a negative regulator of photomorphogenesis under white light but is a positive regulator of UV-B signaling. Genetic interaction studies suggest that BBX31 regulates photomorphogenesis independent of HY5 We found no evidence for a direct BBX31-HY5 interaction, and they primarily regulate different sets of genes in white light. Under high doses of UV-B radiation, BBX31 promotes the accumulation of UV-protective flavonoids and phenolic compounds. It enhances tolerance to UV-B radiation by regulating genes involved in photoprotection and DNA repair in a HY5-dependent manner. Under UV-B radiation, overexpression of BBX31 enhances HY5 transcriptional levels in a UV RESISTANCE LOCUS8-dependent manner, suggesting that BBX31 might regulate HY5 transcription.
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Affiliation(s)
- Arpita Yadav
- Department of Biological Sciences, Indian Institute of Science Education and Research, Bhauri, Bhopal-462066, Madhya Pradesh, India
| | - Souvika Bakshi
- Department of Biological Sciences, Indian Institute of Science Education and Research, Bhauri, Bhopal-462066, Madhya Pradesh, India
| | - Premachandran Yadukrishnan
- Department of Biological Sciences, Indian Institute of Science Education and Research, Bhauri, Bhopal-462066, Madhya Pradesh, India
| | - Maneesh Lingwan
- School of Basic Sciences, Indian Institute of Technology, Mandi-175005, Himachal Pradesh, India
| | - Ulla Dolde
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Stephan Wenkel
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Shyam Kumar Masakapalli
- School of Basic Sciences, Indian Institute of Technology, Mandi-175005, Himachal Pradesh, India
| | - Sourav Datta
- Department of Biological Sciences, Indian Institute of Science Education and Research, Bhauri, Bhopal-462066, Madhya Pradesh, India
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54
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Wang Y, Mao Z, Jiang H, Zhang Z, Chen X. A feedback loop involving MdMYB108L and MdHY5 controls apple cold tolerance. Biochem Biophys Res Commun 2019; 512:381-386. [PMID: 30902392 DOI: 10.1016/j.bbrc.2019.03.101] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 03/16/2019] [Indexed: 11/28/2022]
Abstract
The MYB transcription factors are important for many aspects of plant stress responses. In this study, we isolated and identified an apple MYB gene, MdMYB108L, whose expression is induced by light and cold stresses. An analysis of MdMYB108L-overexpressing transgenic apple calli revealed that MdMYB108L enhances cold tolerance in apple by upregulating MdCBF3 expression. Interestingly, the expression of MdHY5, which encodes an integrator of light and cold signals, was significantly downregulated in transgenic calli. Yeast one-hybrid and electrophoretic mobility shift assays indicated that MdMYB108L positively regulates cold tolerance by binding to the MdCBF3 promoter. Additionally, MdHY5 functions upstream of MdMYB108L, and the resulting increase in MdMYB108L abundance downregulates MdHY5 transcription. The results of this study elucidate a new pathway for the regulation of apple cold tolerance via a feedback mechanism involving MdMYB108L and MdHY5.
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Affiliation(s)
- Yicheng Wang
- National Key Laboratory of Crop Biology, College of Horticulture Science, Shandong Agricultural University, Tai-An, Shandong, China.
| | - Zuolin Mao
- National Key Laboratory of Crop Biology, College of Horticulture Science, Shandong Agricultural University, Tai-An, Shandong, China.
| | - Huiyan Jiang
- National Key Laboratory of Crop Biology, College of Horticulture Science, Shandong Agricultural University, Tai-An, Shandong, China.
| | - Zongying Zhang
- National Key Laboratory of Crop Biology, College of Horticulture Science, Shandong Agricultural University, Tai-An, Shandong, China.
| | - Xuesen Chen
- National Key Laboratory of Crop Biology, College of Horticulture Science, Shandong Agricultural University, Tai-An, Shandong, China.
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55
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Struk S, Jacobs A, Sánchez Martín-Fontecha E, Gevaert K, Cubas P, Goormachtig S. Exploring the protein-protein interaction landscape in plants. PLANT, CELL & ENVIRONMENT 2019; 42:387-409. [PMID: 30156707 DOI: 10.1111/pce.13433] [Citation(s) in RCA: 54] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Accepted: 08/16/2018] [Indexed: 05/24/2023]
Abstract
Protein-protein interactions (PPIs) represent an essential aspect of plant systems biology. Identification of key protein players and their interaction networks provide crucial insights into the regulation of plant developmental processes and into interactions of plants with their environment. Despite the great advance in the methods for the discovery and validation of PPIs, still several challenges remain. First, the PPI networks are usually highly dynamic, and the in vivo interactions are often transient and difficult to detect. Therefore, the properties of the PPIs under study need to be considered to select the most suitable technique, because each has its own advantages and limitations. Second, besides knowledge on the interacting partners of a protein of interest, characteristics of the interaction, such as the spatial or temporal dynamics, are highly important. Hence, multiple approaches have to be combined to obtain a comprehensive view on the PPI network present in a cell. Here, we present the progress in commonly used methods to detect and validate PPIs in plants with a special emphasis on the PPI features assessed in each approach and how they were or can be used for the study of plant interactions with their environment.
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Affiliation(s)
- Sylwia Struk
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Anse Jacobs
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
- Department of Biochemistry, Ghent University, Ghent, Belgium
- Center for Medical Biotechnology, VIB, Ghent, Belgium
| | - Elena Sánchez Martín-Fontecha
- Plant Molecular Genetics Department, Centro Nacional de Biotecnología (CSIC), Campus Universidad Autónoma de Madrid, Madrid, Spain
| | - Kris Gevaert
- Department of Biochemistry, Ghent University, Ghent, Belgium
- Center for Medical Biotechnology, VIB, Ghent, Belgium
| | - Pilar Cubas
- Plant Molecular Genetics Department, Centro Nacional de Biotecnología (CSIC), Campus Universidad Autónoma de Madrid, Madrid, Spain
| | - Sofie Goormachtig
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
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56
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Vaishak KP, Yadukrishnan P, Bakshi S, Kushwaha AK, Ramachandran H, Job N, Babu D, Datta S. The B-box bridge between light and hormones in plants. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2018; 191:164-174. [PMID: 30640143 DOI: 10.1016/j.jphotobiol.2018.12.021] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Revised: 11/23/2018] [Accepted: 12/27/2018] [Indexed: 11/29/2022]
Abstract
Plant development is meticulously modulated by interactions between the surrounding environment and the endogenous phytohormones. Light, as an external signal coordinates with the extensive networks of hormones inside the plant to execute its effects on growth and development. Several proteins in plants have been identified for their crucial roles in mediating light regulated development. Among these are the B-box (BBX) family of transcription factors characterized by the presence of zinc-finger B-box domain in their N-terminal region. In Arabidopsis there are 32 BBX proteins that are divided into five structural groups on the basis of the domains present. Several BBX proteins play important roles in seedling photomorphogenesis, neighbourhood detection and photoperiodic regulation of flowering. There is increasing evidence that besides light signaling BBX proteins also play integral roles in several hormone signaling pathways in plants. Here we attempt to comprehensively integrate the roles of multiple BBX proteins in various light and hormone signaling pathways. We further discuss the role of the BBX proteins in mediating crosstalk between the two signaling pathways to harmonize plant growth and development. Finally, we try to analyse the conservation of BBX genes across species and discuss the role of BBX proteins in regulating economically important traits in crop plants.
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Affiliation(s)
- K P Vaishak
- Plant Cell and Development Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal, India; School of Biological Sciences, Indian Institute of Science Education and Research (IISER) Thiruvananthapuram, India
| | - Premachandran Yadukrishnan
- Plant Cell and Development Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal, India
| | - Souvika Bakshi
- Plant Cell and Development Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal, India
| | - Amit Kumar Kushwaha
- Plant Cell and Development Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal, India
| | - Harshil Ramachandran
- Plant Cell and Development Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal, India
| | - Nikhil Job
- Plant Cell and Development Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal, India
| | - Dion Babu
- Plant Cell and Development Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal, India
| | - Sourav Datta
- Plant Cell and Development Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal, India.
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57
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Hsieh PH, Kan CC, Wu HY, Yang HC, Hsieh MH. Early molecular events associated with nitrogen deficiency in rice seedling roots. Sci Rep 2018; 8:12207. [PMID: 30111825 PMCID: PMC6093901 DOI: 10.1038/s41598-018-30632-1] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Accepted: 07/31/2018] [Indexed: 11/16/2022] Open
Abstract
Nitrogen (N) deficiency is one of the most common problems in rice. The symptoms of N deficiency are well documented, but the underlying molecular mechanisms are largely unknown in rice. Here, we studied the early molecular events associated with N starvation (−N, 1 h), focusing on amino acid analysis and identification of −N-regulated genes in rice roots. Interestingly, levels of glutamine rapidly decreased within 15 min of −N treatment, indicating that part of the N-deficient signals could be mediated by glutamine. Transcriptome analysis revealed that genes involved in metabolism, plant hormone signal transduction (e.g. abscisic acid, auxin, and jasmonate), transporter activity, and oxidative stress responses were rapidly regulated by −N. Some of the −N-regulated genes encode transcription factors, protein kinases and protein phosphatases, which may be involved in the regulation of early −N responses in rice roots. Previously, we used similar approaches to identify glutamine-, glutamate-, and ammonium nitrate-responsive genes. Comparisons of the genes induced by different forms of N with the −N-regulated genes identified here have provided a catalog of potential N regulatory genes for further dissection of the N signaling pathwys in rice.
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Affiliation(s)
- Ping-Han Hsieh
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Chia-Cheng Kan
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Hsin-Yu Wu
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Hsiu-Chun Yang
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Ming-Hsiun Hsieh
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan.
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58
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Wang L, Waters MT, Smith SM. Karrikin-KAI2 signalling provides Arabidopsis seeds with tolerance to abiotic stress and inhibits germination under conditions unfavourable to seedling establishment. THE NEW PHYTOLOGIST 2018; 219:605-618. [PMID: 29726620 DOI: 10.1111/nph.15192] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 03/27/2018] [Indexed: 05/06/2023]
Abstract
The control of seed germination in response to environmental conditions is important for plant success. We investigated the role of the karrikin receptor KARRIKIN INSENSITIVE2 (KAI2) in the response of Arabidopsis seeds to osmotic stress, salinity and high temperature. Germination of the kai2 mutant was examined in response to NaCl, mannitol and elevated temperature. The effect of karrikin on germination of wild-type seeds, hypocotyl elongation and the expression of karrikin-responsive genes was also examined in response to such stresses. The kai2 seeds germinated less readily than wild-type seeds and germination was more sensitive to inhibition by abiotic stress. Karrikin-induced KAI2 signalling stimulated germination of wild-type seeds under favourable conditions, but, surprisingly, inhibited germination in the presence of osmolytes or at elevated temperature. By contrast, GA stimulated germination of wild-type seeds and mutants under all conditions. Karrikin induced expression of DLK2 and KUF1 genes and inhibited hypocotyl elongation independently of osmotic stress. Under mild osmotic stress, karrikin enhanced expression of DREB2A, WRKY33 and ERF5 genes, but not ABA signalling genes. Thus, the karrikin-KAI2 signalling system can protect against abiotic stress, first by providing stress tolerance, and second by inhibiting germination under conditions unfavourable to seedling establishment.
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Affiliation(s)
- Lu Wang
- School of Natural Sciences, University of Tasmania, Tasmania, 7001, Australia
| | - Mark T Waters
- School of Molecular Sciences and Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, 6009, Australia
| | - Steven M Smith
- School of Natural Sciences, University of Tasmania, Tasmania, 7001, Australia
- Institute of Genetics and Developmental Biology, Chinese Academy of sciences, Beijing, 100101, China
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59
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Job N, Yadukrishnan P, Bursch K, Datta S, Johansson H. Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. PLANT PHYSIOLOGY 2018; 176:2963-2976. [PMID: 29439209 PMCID: PMC5884587 DOI: 10.1104/pp.17.00856] [Citation(s) in RCA: 77] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Accepted: 01/30/2018] [Indexed: 05/04/2023]
Abstract
The Arabidopsis (Arabidopsis thaliana) BBX family comprises several positive and negative regulators of photomorphogenesis. BBX24, a member of BBX structural group IV, acts as a negative regulator of photomorphogenesis, whereas another member from the same group, BBX21, is a positive regulator. The molecular basis for the functional diversity shown by these related BBX family members is unknown. Using domain-swap lines, we show that the C-terminal regions of BBX24 and BBX21 specify their function. Because both BBX21 and BBX24 work in close association with HY5, we hypothesized that these proteins differentially regulate the levels or activity of HY5 to fulfill their opposite roles. We show that BBX21 can regulate HY5 post-transcriptionally and the two proteins can coordinate to promote photomorphogenesis. By contrast, BBX24 interferes with the binding of HY5 to the promoter of an anthocyanin biosynthetic gene, possibly by heterodimerizing with HY5 and preventing it from binding DNA. Our finding that both BBX21 and BBX24 regulate HY5 activity post-transcriptionally, in opposite ways, suggests that closely related B-box proteins execute contrasting functions through differential regulation of HY5.
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Affiliation(s)
- Nikhil Job
- Plant Cell and Developmental Biology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhauri, Bhopal 462066, India and
| | - Premachandran Yadukrishnan
- Plant Cell and Developmental Biology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhauri, Bhopal 462066, India and
| | - Katharina Bursch
- Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences (DCPS), Freie Universität Berlin, D-14195 Berlin, Germany
| | - Sourav Datta
- Plant Cell and Developmental Biology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhauri, Bhopal 462066, India and
| | - Henrik Johansson
- Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences (DCPS), Freie Universität Berlin, D-14195 Berlin, Germany
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60
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Yadukrishnan P, Job N, Johansson H, Datta S. Opposite roles of group IV BBX proteins: Exploring missing links between structural and functional diversity. PLANT SIGNALING & BEHAVIOR 2018; 13:e1462641. [PMID: 29701497 PMCID: PMC6149489 DOI: 10.1080/15592324.2018.1462641] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
BBX proteins are a family of zinc finger transcription factors that are versatile regulators of plant development. The 32 BBX proteins in Arabidopsis are subdivided into five structural groups based on their domain structure. Members of group IV play important and diverse roles in light-regulated development. The N-terminal B-box domains mediate DNA binding and transcriptional regulation. The C-terminal region determines the functional diversity of the structurally similar group IV members as reported in our recent study investigating the basis of functional diversification between BBX21 and BBX24. We also found that multi-layered regulation of HY5 by the BBX proteins leads to a diverse repertoire of developmental effects. Here we provide a comprehensive structure-function analysis of the group IV BBX proteins.
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Affiliation(s)
- Premachandran Yadukrishnan
- Plant Cell and Developmental Biology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, India
| | - Nikhil Job
- Plant Cell and Developmental Biology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, India
| | - Henrik Johansson
- Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences (DCPS), Freie Universität Berlin, Albrecht-Thaer-Weg 6. D-14195 Berlin, Germany
| | - Sourav Datta
- Plant Cell and Developmental Biology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, India
- CONTACT Dr. Sourav Datta Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, India
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61
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Xu DB, Gao SQ, Ma YN, Wang XT, Feng L, Li LC, Xu ZS, Chen YF, Chen M, Ma YZ. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. MOLECULAR PLANT 2017; 10:1206-1223. [PMID: 28827171 DOI: 10.1016/j.molp.2017.08.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2016] [Revised: 08/08/2017] [Accepted: 08/09/2017] [Indexed: 05/10/2023]
Abstract
Hypocotyl development in Arabidopsis thaliana is regulated by light and endogenous hormonal cues, making it an ideal model to study the interplay between light and endogenous growth regulators. BBX21, a B-box (BBX)-like zinc-finger transcription factor, integrates light and abscisic acid signals to regulate hypocotyl elongation in Arabidopsis. Heterotrimeric G-proteins are pivotal regulators of plant development. The short hypocotyl phenotype of the G-protein β-subunit (AGB1) mutant (agb1-2) has been previously identified, but the precise role of AGB1 in hypocotyl elongation remains enigmatic. Here, we show that AGB1 directly interacts with BBX21, and the short hypocotyl phenotype of agb1-2 is partially suppressed in agb1-2bbx21-1 double mutant. BBX21 functions in the downstream of AGB1 and overexpression of BBX21 in agb1-2 causes a more pronounced reduction in hypocotyl length, indicating that AGB1 plays an oppositional role in relation to BBX21 during hypocotyl development. Furthermore, we demonstrate that the C-terminal region of BBX21 is important for both its intracellular localization and its transcriptional activation activity that is inhibited by interaction with AGB1. ChIP assays showed that BBX21 specifically associates with its own promoter and with those of BBX22, HY5, and GA2ox1. which is not altered in agb1-2. These data suggest that the AGB1-BBX21 interaction only affects the transcriptional activation activity of BBX21 but has no effect on its DNA binding ability. Taken together, our data demonstrate that AGB1 positively promotes hypocotyl elongation through repressing BBX21 activity.
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Affiliation(s)
- Dong-Bei Xu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China; Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No.1 Qianhu Houcun, Zhongshanmen Wai, Nanjing, Jiangsu Province 210014, PR China
| | - Shi-Qing Gao
- Beijing Engineering Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Ya-Nan Ma
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xiao-Ting Wang
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Lu Feng
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Lian-Cheng Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Zhao-Shi Xu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Yao-Feng Chen
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China.
| | - Ming Chen
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China.
| | - You-Zhi Ma
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China.
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62
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Zhang X, Lin R. Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. PLANT SIGNALING & BEHAVIOR 2017; 12:e1365213. [PMID: 28922622 PMCID: PMC5640187 DOI: 10.1080/15592324.2017.1365213] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2017] [Accepted: 08/03/2017] [Indexed: 05/24/2023]
Abstract
Light is an important external signal that affects plant growth and development, such as photomorphogenesis. Transcriptional regulation defines a central regulatory mechanism in photomorphogenesis. The B-box zinc finger family consists of 32 proteins in Arabidopsis thaliana. Previous studies show that group IV of the B-box family (BBX18 to BBX25) plays either positive or negative roles in regulating photomorphogenesis. We investigated the expression patterns of BBX18 to BBX25 and the results demonstrate that the transcriptional levels of these genes are differentially regulated by the light signaling pathway.
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Affiliation(s)
- Xinyu Zhang
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Rongcheng Lin
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
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Zhang X, Huai J, Shang F, Xu G, Tang W, Jing Y, Lin R. A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis. PLANT PHYSIOLOGY 2017; 174:2487-2500. [PMID: 28687557 PMCID: PMC5543951 DOI: 10.1104/pp.17.00418] [Citation(s) in RCA: 97] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 07/01/2017] [Indexed: 05/18/2023]
Abstract
Light signaling plays an essential role in controlling higher plants' early developmental process termed as photomorphogenesis. Transcriptional regulation is a vital mechanism that is orchestrated by transcription factors and other regulatory proteins working in concert to finely tune gene expression. Although many transcription factors/regulators have been characterized in the light-signaling pathway, their interregulation remains largely unknown. Here, we show that PHYTOCHROME-INTERACTING FACTOR3 (PIF3) and PIF1 transcription factors directly bind to the regulatory regions of ELONGATED HYPOCOTYL5 (HY5) and a B-box gene BBX23 and activate their expression in Arabidopsis (Arabidopsis thaliana). We found that BBX23 and its close homolog gene BBX22 play a redundant role in regulating hypocotyl growth, and that plants overexpressing BBX23 display reduced hypocotyl elongation under red, far-red, and blue light conditions. Intriguingly, BBX23 transcription is inhibited by light, whereas its protein is degraded in darkness. Furthermore, we demonstrate that HY5 physically interacts with BBX23, and these two proteins coordinately regulate the expression of both light-induced and light-repressed genes. BBX23 is also recruited to the promoter sequences of the light-responsive genes in a partial HY5-dependent manner. Taken together, our study reveals that the transcriptional cascade consisting of PIF1/PIF3, HY5, and BBX23 controls photomorphogenesis, providing a transcriptional regulatory layer by which plants fine-tune their growth in response to changing light environment.
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Affiliation(s)
- Xinyu Zhang
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Junling Huai
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Fangfang Shang
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Gang Xu
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Weijiang Tang
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Yanjun Jing
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Rongcheng Lin
- Key Laboratory of Photobiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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64
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Abstract
Strigolactones are a structurally diverse class of plant hormones that control many aspects of shoot and root growth. Strigolactones are also exuded by plants into the rhizosphere, where they promote symbiotic interactions with arbuscular mycorrhizal fungi and germination of root parasitic plants in the Orobanchaceae family. Therefore, understanding how strigolactones are made, transported, and perceived may lead to agricultural innovations as well as a deeper knowledge of how plants function. Substantial progress has been made in these areas over the past decade. In this review, we focus on the molecular mechanisms, core developmental roles, and evolutionary history of strigolactone signaling. We also propose potential translational applications of strigolactone research to agriculture.
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Affiliation(s)
- Mark T Waters
- School of Molecular Sciences and Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth 6009, Australia;
| | - Caroline Gutjahr
- Genetics, Faculty of Biology, LMU Munich, 82152 Martinsried, Germany;
| | - Tom Bennett
- School of Biology, University of Leeds, Leeds LS2 9JT, United Kingdom;
| | - David C Nelson
- Department of Botany and Plant Sciences, University of California, Riverside, California 92521;
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