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For: Vodovotz Y, Constantine G, Rubin J, Csete M, Voit EO, An G. Mechanistic simulations of inflammation: current state and future prospects. Math Biosci 2008;217:1-10. [PMID: 18835282 DOI: 10.1016/j.mbs.2008.07.013] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2008] [Accepted: 07/11/2008] [Indexed: 12/15/2022]
Number Cited by Other Article(s)
51
Computational modeling of microabscess formation. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2012. [PMID: 23197993 PMCID: PMC3502874 DOI: 10.1155/2012/736394] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
52
Dick TE, Molkov YI, Nieman G, Hsieh YH, Jacono FJ, Doyle J, Scheff JD, Calvano SE, Androulakis IP, An G, Vodovotz Y. Linking Inflammation, Cardiorespiratory Variability, and Neural Control in Acute Inflammation via Computational Modeling. Front Physiol 2012;3:222. [PMID: 22783197 PMCID: PMC3387781 DOI: 10.3389/fphys.2012.00222] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2012] [Accepted: 06/03/2012] [Indexed: 01/10/2023]  Open
53
Fu Y, Glaros T, Zhu M, Wang P, Wu Z, Tyson JJ, Li L, Xing J. Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells. PLoS Comput Biol 2012;8:e1002526. [PMID: 22615556 PMCID: PMC3355072 DOI: 10.1371/journal.pcbi.1002526] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2011] [Accepted: 04/04/2012] [Indexed: 12/18/2022]  Open
54
A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine. Crit Care Med 2012;40:1052-63. [PMID: 22425816 DOI: 10.1097/ccm.0b013e31823e986a] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
55
An G, Nieman G, Vodovotz Y. Toward computational identification of multiscale "tipping points" in acute inflammation and multiple organ failure. Ann Biomed Eng 2012;40:2414-24. [PMID: 22527009 DOI: 10.1007/s10439-012-0565-9] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2012] [Accepted: 04/02/2012] [Indexed: 12/25/2022]
56
McGuire MF, Iyengar MS, Mercer DW. Computational approaches for translational clinical research in disease progression. J Investig Med 2012;59:893-903. [PMID: 21712727 DOI: 10.2310/jim.0b013e318224d8cc] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
57
An G, Nieman G, Vodovotz Y. Computational and systems biology in trauma and sepsis: current state and future perspectives. INTERNATIONAL JOURNAL OF BURNS AND TRAUMA 2012;2:1-10. [PMID: 22928162 PMCID: PMC3415970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Received: 12/30/2011] [Accepted: 01/15/2012] [Indexed: 06/01/2023]
58
An G, Namas RA, Vodovotz Y. Sepsis: from pattern to mechanism and back. Crit Rev Biomed Eng 2012;40:341-51. [PMID: 23140124 PMCID: PMC3623270 DOI: 10.1615/critrevbiomedeng.v40.i4.80] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
59
Viljoen A, Mncwangi N, Vermaak I. Anti-inflammatory iridoids of botanical origin. Curr Med Chem 2012;19:2104-27. [PMID: 22414102 PMCID: PMC3873812 DOI: 10.2174/092986712800229005] [Citation(s) in RCA: 115] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2011] [Revised: 01/07/2012] [Accepted: 01/08/2012] [Indexed: 11/22/2022]
60
Li NYK, Vodovotz Y, Kim KH, Mi Q, Hebda PA, Abbott KV. Biosimulation of acute phonotrauma: an extended model. Laryngoscope 2011;121:2418-28. [PMID: 22020892 DOI: 10.1002/lary.22226] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
61
McGuire MF, Iyengar MS, Mercer DW. Computational approaches for translational clinical research in disease progression. J Investig Med 2011;59. [PMID: 21712727 PMCID: PMC3196807 DOI: 10.231/jim.0b013e318224d8cc] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
62
Sepsis: Something old, something new, and a systems view. J Crit Care 2011;27:314.e1-11. [PMID: 21798705 DOI: 10.1016/j.jcrc.2011.05.025] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2011] [Revised: 05/08/2011] [Accepted: 05/19/2011] [Indexed: 01/01/2023]
63
Scheff JD, Mavroudis PD, Calvano SE, Lowry SF, Androulakis IP. Modeling autonomic regulation of cardiac function and heart rate variability in human endotoxemia. Physiol Genomics 2011;43:951-64. [PMID: 21673075 DOI: 10.1152/physiolgenomics.00040.2011] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
64
Brown BN, Price IM, Toapanta FR, DeAlmeida DR, Wiley CA, Ross TM, Oury TD, Vodovotz Y. An agent-based model of inflammation and fibrosis following particulate exposure in the lung. Math Biosci 2011;231:186-96. [PMID: 21385589 PMCID: PMC3088650 DOI: 10.1016/j.mbs.2011.03.005] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2010] [Revised: 02/26/2011] [Accepted: 03/01/2011] [Indexed: 12/11/2022]
65
Yang Q, Calvano SE, Lowry SF, Androulakis IP. A dual negative regulation model of Toll-like receptor 4 signaling for endotoxin preconditioning in human endotoxemia. Math Biosci 2011;232:151-63. [PMID: 21624378 DOI: 10.1016/j.mbs.2011.05.005] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2010] [Revised: 05/10/2011] [Accepted: 05/16/2011] [Indexed: 12/17/2022]
66
de Morais Lima GR, de Albuquerque Montenegro C, de Almeida CLF, de Athayde-Filho PF, Barbosa-Filho JM, Batista LM. Database survey of anti-inflammatory plants in South America: a review. Int J Mol Sci 2011;12:2692-749. [PMID: 21731467 PMCID: PMC3127143 DOI: 10.3390/ijms12042692] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2011] [Revised: 04/08/2011] [Accepted: 04/11/2011] [Indexed: 02/06/2023]  Open
67
An G, Mi Q, Dutta-Moscato J, Vodovotz Y. Agent-based models in translational systems biology. WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE 2011;1:159-171. [PMID: 20835989 DOI: 10.1002/wsbm.45] [Citation(s) in RCA: 159] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
68
Popel AS, Hunter PJ. Systems biology and physiome projects. WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE 2011;1:153-158. [PMID: 20835988 DOI: 10.1002/wsbm.67] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
69
An G, Bartels J, Vodovotz Y. In Silico Augmentation of the Drug Development Pipeline: Examples from the study of Acute Inflammation. Drug Dev Res 2010;72:187-200. [PMID: 21552346 DOI: 10.1002/ddr.20415] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
70
Valeyev NV, Hundhausen C, Umezawa Y, Kotov NV, Williams G, Clop A, Ainali C, Ouzounis C, Tsoka S, Nestle FO. A systems model for immune cell interactions unravels the mechanism of inflammation in human skin. PLoS Comput Biol 2010;6:e1001024. [PMID: 21152006 PMCID: PMC2996319 DOI: 10.1371/journal.pcbi.1001024] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2010] [Accepted: 11/04/2010] [Indexed: 11/21/2022]  Open
71
Mi Q, Li NYK, Ziraldo C, Ghuma A, Mikheev M, Squires R, Okonkwo DO, Verdolini-Abbott K, Constantine G, An G, Vodovotz Y. Translational systems biology of inflammation: potential applications to personalized medicine. Per Med 2010;7:549-559. [PMID: 21339856 PMCID: PMC3041597 DOI: 10.2217/pme.10.45] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
72
Vodovotz Y, Constantine G, Faeder J, Mi Q, Rubin J, Bartels J, Sarkar J, Squires RH, Okonkwo DO, Gerlach J, Zamora R, Luckhart S, Ermentrout B, An G. Translational systems approaches to the biology of inflammation and healing. Immunopharmacol Immunotoxicol 2010;32:181-95. [PMID: 20170421 PMCID: PMC3134151 DOI: 10.3109/08923970903369867] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
73
Arciero JC, Ermentrout GB, Upperman JS, Vodovotz Y, Rubin JE. Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis. PLoS One 2010;5:e10066. [PMID: 20419099 PMCID: PMC2856678 DOI: 10.1371/journal.pone.0010066] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2010] [Accepted: 03/14/2010] [Indexed: 12/29/2022]  Open
74
Vodovotz Y. Translational systems biology of inflammation and healing. Wound Repair Regen 2010;18:3-7. [PMID: 20082674 DOI: 10.1111/j.1524-475x.2009.00566.x] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
75
Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. Multiscale model for the assessment of autonomic dysfunction in human endotoxemia. Physiol Genomics 2010;42:5-19. [PMID: 20233835 DOI: 10.1152/physiolgenomics.00184.2009] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
76
Dong X, Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes. PLoS One 2010;5:e9249. [PMID: 20174629 PMCID: PMC2823776 DOI: 10.1371/journal.pone.0009249] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2009] [Accepted: 11/27/2009] [Indexed: 01/09/2023]  Open
77
Kant CS, Ibberson MR, Scheer A. Building a disease knowledge environment to lay the foundations forin silicodrug discovery and translational medicine. Expert Opin Drug Discov 2010;5:117-22. [DOI: 10.1517/17460440903548226] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
78
Di Pino G, Formica D, Lonini L, Accoto D, Benvenuto A, Micera S, Rossini PM, Guglielmelli E. ODEs model of foreign body reaction around peripheral nerve implanted electrode. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2010;2010:1543-1546. [PMID: 21096377 DOI: 10.1109/iembs.2010.5626825] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
79
An GC. Translational systems biology using an agent-based approach for dynamic knowledge representation: An evolutionary paradigm for biomedical research. Wound Repair Regen 2010;18:8-12. [DOI: 10.1111/j.1524-475x.2009.00568.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
80
Systems biology and inflammation. Methods Mol Biol 2010;662:181-201. [PMID: 20824472 DOI: 10.1007/978-1-60761-800-3_9] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
81
Foteinou P, Yang E, Androulakis IP. NETWORKS, BIOLOGY AND SYSTEMS ENGINEERING: A CASE STUDY IN INFLAMMATION. Comput Chem Eng 2009;33:2028-2041. [PMID: 20161495 PMCID: PMC2796781 DOI: 10.1016/j.compchemeng.2009.06.027] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
82
Namas R, Ghuma A, Hermus L, Zamora R, Okonkwo DO, Billiar TR, Vodovotz Y. The acute inflammatory response in trauma / hemorrhage and traumatic brain injury: current state and emerging prospects. Libyan J Med 2009;4:97-103. [PMID: 21483522 PMCID: PMC3066737 DOI: 10.4176/090325] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
83
Chou IC, Voit EO. Recent developments in parameter estimation and structure identification of biochemical and genomic systems. Math Biosci 2009;219:57-83. [PMID: 19327372 PMCID: PMC2693292 DOI: 10.1016/j.mbs.2009.03.002] [Citation(s) in RCA: 298] [Impact Index Per Article: 19.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2008] [Revised: 03/06/2009] [Accepted: 03/15/2009] [Indexed: 01/16/2023]
84
A systems-theoretical framework for health and disease: inflammation and preconditioning from an abstract modeling point of view. Math Biosci 2008;217:11-8. [PMID: 18851981 DOI: 10.1016/j.mbs.2008.09.005] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2008] [Revised: 09/19/2008] [Accepted: 09/20/2008] [Indexed: 12/12/2022]
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