Conformational rearrangements in and twisting of a single molecule

FRET and ligand related NON-FRET processes in single quantum dot-perylene bisimide assemblies

Nanoassemblies are formed via self-assembly of ZnS capped CdSe quantum dots (QD) and perylene bisimide dyes (PBI). Upon assembly formation with functionalized dye molecules the QD photoluminescence (PL) is quenched. Quenching has been assigned partly to FRET (fluorescence resonance energy transfer) and NON-FRET processes. By means of time resolved single particle spectroscopy of immobilized QD-dye assemblies, it is demonstrated that NON-FRET processes are due to new non-radiative decay channels caused by the assembly formation process itself. Immobilized (single) assemblies exhibit the same processes as ensembles of assemblies in toluene solution. Only one dye molecule on a QD quenches the PL up to 50%, which is much stronger than is expected when replacing a volume related number of ligands. NON-FRET processes are distinct from photoinduced charge and/or energy transfer. A combination of a Stern-Volmer and FRET analysis of ensemble experiments supports the investigation of the dynamics of assembly formation at extremely low concentration ratios of PBI to QD. This allows us to distinguish between the effects of PBI and ligands on PL quenching on a single molecule level which is not possible in conventional ligand dynamic experiments.

Identification of different donor-acceptor structures via Förster Resonance Energy Transfer (FRET) in quantum-dot-perylene bisimide assemblies

Nanoassemblies are formed via self-assembly of ZnS capped CdSe quantum dots (QD) and perylene bisimide (PBI) dyes. Upon assembly formation the QD photoluminescence is quenched, as can be detected both via single particle detection and ensemble experiments in solution. Quenching has been assigned to FRET and NON-FRET processes. Analysis of FRET allows for a distinction between different geometries of the QD dye assemblies. Time-resolved single molecule spectroscopy reveals intrinsic fluctuations of the PBI fluorescence lifetime and spectrum, caused by rearrangement of the phenoxy side groups. The distribution of such molecular conformations and their changed dynamics upon assembly formation are discussed in the scope of FRET efficiency and surface ligand density.

Conformational Effects of Bay Substituents on Optical, Electrochemical and Dynamic Properties of Perylene Bisimides: Macrocyclic Derivatives as Effective Probes

A series of diagonally and laterally bridged regioisomeric macrocycles based on 1,6,7,12-tetraaryloxy-substituted perylene bisimides (APBIs) have been synthesized and characterized. The different orientations of the aryloxy residues, that is, horizontal or perpendicular to the perylene core, in the regioisomeric macrocycles have been elucidated by NMR spectroscopy, and the dynamic properties of the laterally bridged regioisomers have been investigated by temperature-dependent NMR measurements. The influence of the different orientations of the aryloxy substituents on the electrochemical properties of APBIs is demonstrated by cyclic voltammetry, which reveals that a perpendicular orientation of the aryloxy residues relative to the perylene core leads to a substantial decrease of the LUMO energy level of the perylene bisimide electrophore. The optical properties of the regioisomeric macrocycles have been determined by UV/Vis and fluorescence spectroscopy. It has been shown that the diagonally bridged macrocycles exhibit optical properties that differ significantly from those of an open-chain reference compound, whereas the optical properties of the laterally bridged isomers resemble those of the reference system. This demonstrates that unrestricted aryloxy substituents prefer the lateral conformation in solution. Solvent-dependent fluorescent properties have been exemplified for one diagonally bridged derivative, suggesting a photoinduced electron transfer process as fluorescence quenching mechanism for APBIs. From these investigations, guidelines toward highly fluorescent APBI dyes in polar media could be derived.

Comparison of the Photophysical Parameters for Three Perylene Bisimide Derivatives by Single-Molecule Spectroscopy

Characterization of the photophysical parameters for three perylene bisimide derivatives is presented. We exploited time-resolved and steady-state spectroscopy on both ensembles and single molecules under ambient as well as cryogenic (1.4 K) conditions. The finding is that these chromophores show extraordinary high fluorescence-emission rates, low intersystem crossing yields to the triplet state, and relatively short triplet lifetimes.

Power-Law Blinking in the Fluorescence of Single Organic Molecules

The blinking behavior of perylene diïmide molecules is investigated at the single-molecule level. We observe long-time scale blinking of individual multi-chromophoric complexes embedded in a poly(methylmethacrylate) matrix, as well as for the monomeric dye absorbed on a glass substrate at ambient conditions. In both these different systems, the blinking of single molecules is found to obey analogous power-law statistics for both the on and off periods. The observed range for single-molecular power-law blinking extends over the full experimental time window, covering four orders of magnitude in time and six orders of magnitude in probability density. From molecule to molecule, we observe a large spread in off-time power-law exponents. The distributions of off-exponents in both systems are markedly different whereas both on-exponent distributions appear similar. Our results are consistent with models that ascribe the power-law behavior to charge separation and (environment-dependent) recombination by electron tunneling to a dynamic distribution of charge acceptors. As a consequence of power-law statistics, single molecule properties like the total number of emitted photons display non-ergodicity.

Fluorescent Perylene Diimide Rotaxanes: Spectroscopic Signatures of Wheel–Chromophore Interactions

[2]- and [3]-rotaxanes with a tetraphenoxy perylene diimide core were synthesized. Hydrogen bonding between the wheel and the imide changes the optical properties of the perylene chromophore: the absorption and fluorescence spectra are red-shifted. The decay times of the rotaxanes are shorter in comparison with that of the axle. Single molecule fluorescence measurements reveal relatively narrow distributions of emission maxima and decay times. The averages are in agreement with ensemble measurements. The observed red shifts make the perylene diimide a suitable chromophore for sensing the position of the wheel on the axle.

Photoluminescence and Conductivity of Self-Assembled π–π Stacks of Perylene Bisimide Dyes

The self-assembly of a new, highly fluorescent perylene bisimide dye 2 into pi stacks, both in solution and condensed phase, has been studied in detail by NMR spectroscopy, vapor pressure osmometry (VPO), UV/Vis and fluorescence spectroscopy, differential scanning calorimetry (DSC), optical polarizing microscopy (OPM) and X-ray diffraction. The NMR and VPO measurements revealed the formation of extended pi-pi stacks of the dye molecules in solution. The aggregate size determined from VPO and DOSY NMR measurements agree well with that obtained from the concentration and temperature-dependent UV/Vis spectral data by employing the isodesmic model (equal K model). In the condensed state, dye 2 possesses a hexagonal columnar liquid crystalline (LC) phase as confirmed by X-ray diffraction analysis. The columnar stacking of this dye has been further explored by atomic force microscopy (AFM). Well-resolved columnar nanostructures of the compound are observed on graphite surface. A color-tunable luminescence from green to red has been observed upon aggregation which is accompanied by an increase of the fluorescence lifetime and depolarization. The observed absorption properties can be explained in terms of molecular exciton theory. The charge transport properties of dye 2 have been investigated by pulse radiolysis-time resolved microwave conductivity measurements and a 1D charge carrier mobility up to 0.42 cm(2) V(-1) s(-1) is obtained. Considering the promising self-assembly, semiconducting, and luminescence properties of this dye, it might serve as a useful functional material for nano(opto)electronics.

Water-soluble perylene diimides: Solution photophysics and layer-by-layer incorporation into polyelectrolyte films

Recently the synthesis of water-soluble and fluorescent perylene diimides has been reported (Müllen, K.; et al. Angew. Chem., Int. Ed. 2004, 43, 1528; Chem.-Eur. J. 2004, 10, 5297). We have characterized the photophysics of two of these compounds (anionic n-PDI, CAS Reg. No. 694438-88-5. and cationic p-PDI, CAS Reg. No. 817207-4-7) in pure water, dimethyl sulfoxide (DMSO), and aqueous NaCl. These studies, supported by molecular dynamics simulations, have led to the conclusion that these compounds form weakly interacting aggregated species in pure water. n-PDI and p-PDI have been incorporated in polyelectrolyte films of poly(styrene sulfonate) (PSS) and poly(diallyldimethylammonium chloride) (PDAC) following the layer-by-layer (LBL) methodology. The optical density and fluorescence intensity of the PDI-LBL films grew linearly with the number of layers, and the PDI was not extracted by subsequent polyelectrolyte deposition. The PDI fluorescence quantum yield was substantially diminished in these films, which we interpret as a self-quenching effect, enhanced by inter- and intralayer energy transfer. Energy-transfer studies to the incorporated cationic dye Brilliant Green (BG) has demonstrated that the BG resides in the same PSS-rich region as p-PDI and is largely excluded from the region that contains n-PDI (PDAC-rich).

Influence of intermolecular orientation on the photoinduced charge transfer kinetics in self-assembled aggregates of donor-acceptor arrays

The kinetics of photoinduced charge transfer reactions in covalently linked donor-acceptor molecules often undergoes dramatic changes when these molecules self-assemble from a molecular dissolved state into a nanoaggregate. Frequently, the origin of these changes is only partially understood. In this paper, we describe the intermolecular spatial organization of three homologous arrays, consisting of a central perylene bisimide (PERY) acceptor moiety and two oligo(p-phenylene vinylene) (OPV) donor units, in nanoaggregates and identify both face-to-face (H-type) and slipped (J-type) stacking of the OPV and PERY chromophores. For the J-type aggregates, short intermolecular OPV-PERY distances are created that give rise to a charge-transfer absorption band. The proximity of the donor and acceptor groups in the J-type aggregates enables a highly efficient photoinduced charge separation with a rate (k(cs) > 10(12) s(-1)) that significantly exceeds the rate of the intramolecular charge transfer of the same compounds when molecularly dissolved, even in the most polar media. In the H-type aggregates, on the other hand, the intermolecular OPV-PERY distance is not reduced compared to the intramolecular separation, and hence, the rates of the electron transfer reactions are not significantly affected compared to the molecular dissolved state. Similar to the forward electron transfer, the kinetics of the charge recombination in the aggregated state can be understood by considering the different interchromophoric distances that occur in the H- and J-type aggregates. These results provide the first consistent rationalization of the remarkable differences that are observed for photoinduced charge-transfer reactions of donor-acceptor compounds in molecularly dissolved versus aggregated states.

Existence of Conformers Revealed by Spectral Analysis of Single Molecules of Perylene Orange in Thin Sol−Gel Films

This paper reports on the spectral dynamics of perylene orange in thin sol-gel films. The studies are performed at the single molecule level to retrieve local information on such samples. The fluorescence spectrum of a molecule depends on the properties of the molecule itself and especially on its conformation in the ground state and in the state reached after excitation. Studies have been performed at room temperature and at a lower temperature, around 173 K. A large number of the recorded spectra reflect dual fluorescence. It is the rule at room temperature. However, at low temperature, single molecules either are relatively free to change conformation or are caught in a rigid environment. In the latter case, they present the spectrum of a rigid dye and we have identified the signature of several conformers of perylene orange in the ground state.

Scanning Tunneling Microscopy and Spectroscopy of Donor-Acceptor-Donor Triads at the Liquid/Solid Interface

By means of scanning tunneling microscopy (STM), the self-assembly of two organic donor-acceptor-donor triads (donor=oligo(p-phenylene vinylene) (OPV); acceptor=perylene diimide (PDI)) and their mixtures has been investigated at the liquid/solid interface. Both triads differ in the nature of the substituents and, therefore, in the redox properties of the central perylene diimide unit (H or Cl). Thanks to the submolecular resolution, the distinct electronic properties of the units, within a triad and between the two triads, are reflected by the relative STM contrast in the bias-dependent imaging experiments. Moreover, scanning tunneling spectroscopy reveals an inverse rectifying behavior of the OPV and H-substituted PDI units, which is discussed in the framework of quasi-resonant tunneling. A striking difference is observed for the Cl-substituted triad.

The Chemistry of Organic Nanomaterials

The development of nanotechnology using organic materials is one of the most intellectually and commercially exciting stories of our times. Advances in synthetic chemistry and in methods for the investigation and manipulation of individual molecules and small ensembles of molecules have produced major advances in the field of organic nanomaterials. The new insights into the optical and electronic properties of molecules obtained by means of single-molecule spectroscopy and scanning probe microscopy have spurred chemists to conceive and make novel molecular and supramolecular designs. Methods have also been sought to exploit the properties of these materials in optoelectronic devices, and prototypes and models for new nanoscale devices have been demonstrated. This Review aims to show how the interaction between synthetic chemistry and spectroscopy has driven the field of organic nanomaterials forward towards the ultimate goal of new technology.

Single-molecule pump-probe experiments reveal variations in ultrafast energy redistribution

Single-molecule pump probe (SM2P) is a novel, fluorescence-based technique that allows the study of ultrafast processes on the single-molecule level. Exploiting SM2P we have observed large variations (from 1 ps to below 100 fs) in the energy redistribution times of chemically identical molecules in the same sample. Embedding the molecules in a different matrix or changing the excitation wavelength does not lead to significant changes in the average redistribution time. However, chemically different molecules exhibit different characteristic redistribution times. We therefore conclude that the process measured with the SM2P technique is dominated by intramolecular energy redistribution and not intermolecular transfer to the surrounding matrix. The matrix though is responsible for inducing conformational changes in the molecule, which affect the coupling between electronic and vibrational modes. These conformational changes are the main origin of the observed broad distribution of redistribution times.

Single Molecule Blinking and Photobleaching Separated by Wide-Field Fluorescence Microscopy

Single molecule fluorescence detection of Atto590 in poly(vinyl alcohol) was achieved by using a wide-field epifluorescence microscope with CCD-camera detection. Image sequences are obtained from which the time traces of the detected molecules are built. We find a distinctive difference between the time evolution of the fluorescence originating from the molecules detected in the first image of the sequence compared to the time evolution of the fluorescence of the molecules detected in each image of the sequence. Atto590 shows very long blinking times and photobleaching and photoblinking that are both quadratically dependent on the irradiation power density. Our approach allows kinetic separation of photobleaching from blinking. The possibility of choosing different ensembles of molecules is demonstrated and taken advantage of for this aim. Initially dark molecules or low emitting ones that might be overlooked are important to describe the complete ensemble behavior.

Photophysical Properties of a Tetraphenoxy-Substituted Perylene Bisimide Derivative Characterized by Single-Molecule Spectroscopy

We present a detailed study of the photophysical properties of a tetraphenoxy-substituted perylene bisimide derivative. The probe molecules were immobilized in a Shpol'skii matrix of hexadecane and investigated by single-molecule spectroscopy at cryogenic temperatures. By using single-molecule spectroscopic techniques we reveal the triplet substate kinetics and the fluorescence quantum yield, and we provide an estimate for the S1-S0 transition dipole moment.

Ultrafast Energy-Electron Transfer Cascade in a Multichromophoric Light-Harvesting Molecular Square

A molecular square with dimensions of about 4 nm, incorporating sixteen pyrene chromophores attached to four ditopic bay-functionalized perylene bisimide chromophores, has been synthesized by coordination to four Pt(II) phosphine corner units and fully characterized via NMR spectroscopy and ESI-FTICR mass spectrometry. Steady-state and time-resolved emission as well as femtosecond transient absorption studies reveal the presence of a highly efficient (>90%) and fast photoinduced energy transfer (k(en) approximately equal to 5.0 x 10(9) s(-1)) from the pyrene to the perylene bisimide chromophores and a very fast and efficient electron transfer (>94%, k(et) approximately equal to 5 x 10(11) up to 43 x 10(11) s(-1)). Spectrotemporal parametrization indicates upper excited-state electron-transfer processes, various energy and electron-transfer pathways, and chromophoric heterogeneity. Temperature-dependent time-resolved emission spectroscopy has shown that the acceptor emission lifetime increases with decreasing temperature from which an electron-transfer barrier is obtained. The extremely fast electron-transfer processes (substantially faster and more efficient than in the free ligand) that are normally only observed in solid materials, together with the closely packed structure of 20 chromophoric units, indicate that we can consider the molecular square as a monodisperse nanoaggregate: a molecularly defined ensemble of chromophores that partly behaves like a solid material.

Photophysical and Electrochemical Properties of 1,7-Diaryl-Substituted Perylene Diimides

Substituent effects on the photophysical and electrochemical properties of 1,7-diaryl-substituted perylene diimides (1,7-Ar(2)PDIs) have been carefully explored. Progressive red-shifts of the absorption and emission maxima were observed when the electron-donating ability of these substituents was increased. Linear Hammett correlations of 1/lambda(max) versus sigma(+) were observed in both spectral analyses. The positive slopes of the Hammett plots suggested that the electronic transitions carry certain amounts of photoinduced intramolecular charge-transfer (PICT) character from the aryl substituents to the perylene diimide core which leads to the reduction of the electron density on the substituents. The substituent electronic effects originated mainly from the perturbation of the core PDI HOMO energy level by the substituents. This conclusion was supported by PM3 analyses and confirmed by cyclic voltammetry experiments. More interestingly, the Ph(2)NC(6)H(4)-substituted PDI, 4i, showed an unusual dual-band absorption that spans from 450 to 750 nm. We tentatively assigned these two bands as the charge-transfer band and the PDI core absorption, respectively.

Imaging of Tautomerism in a Single Molecule

Fluorescence imaging is used to visualize directly the transfer of two inner hydrogen atoms in single porphycene molecules. This reaction leads to a chemically equivalent but differently oriented structure and hence results in a rotation of the transition dipole moments. By probing single immobilized molecules with an azimuthally polarized laser beam in the focal spot of a confocal microscope we observe ring-like emission patterns, possible only for a chromophore with two nearly orthogonal transition dipole moments. Numerical simulations of the observed emission patterns yield a value of 72 degrees for the angle between the S0-S1 transition moments in the two tautomeric forms.

Two-dimensional self-assembly into multicomponent hydrogen-bonded nanostructures

By means of scanning tunneling microscopy, we have explored the two-dimensional self-assembly of functional bicomponent hydrogen-bonding dye systems, leading to well-defined patterns, different from those of the individual components, and providing design rules to immobilize multicomponent systems at the liquid-solid interface.

Water-Soluble Rylene Dyes as High-Performance Colorants for the Staining of Cells

The synthesis of perylene and terrylene chromophores carrying a single poly(ethylene oxide) chain is presented. These chromophores reveal a strong solvatochromic behavior: High fluorescence in nonpolar solvents and weak fluorescence in polar solvents which is mainly attributed to aggregation. Therefore, such chromophores are attractive candidates as sensitive fluorescent probes reflecting the polarity of their environment. In particular, their suitability for the staining of cellular membranes is presented in detail.

Probing conformational dynamics in single donor-acceptor synthetic molecules by means of photoinduced reversible electron transfer

We use single-molecule fluorescence lifetimes to probe dynamics of photoinduced reversible electron transfer occurring between triphenylamine (donor) and perylenediimide (acceptor) in single molecules of a polyphenylenic rigid dendrimer embedded in polystyrene. Here, reversible electron transfer in individual donor-acceptor molecules results in delayed fluorescence that is emitted with a high photon count rate. By monitoring fluorescence decay times on a photon-by-photon basis, we find fluctuations in both forward and reverse electron transfer spanning a broad time range, from milliseconds to seconds. Fluctuations are induced by conformational changes in the dendrimer structure as well by polystyrene chain reorientation. The conformational changes are related to changes in the dihedral angle of adjacent phenyl rings located in the dendritic branch near the donor transferring the charge, a torsional motion that results in millisecond fluctuations in the "through-bond" donor-acceptor electronic coupling. Polymer chain reorientation leads to changes in the local polarity experienced by the donors and to changes in the solvation of the charge-separated state. As a result, switching between different donor moieties within the same single molecule becomes possible and induces fluctuations in decay time on a time scale of seconds.

Single-Molecule Conformations Probe Free Volume in Polymers

In this communication, we showed that the conformational dynamics of the tetraphenoxy-perylenetetracarboxy diimide single dye molecule embedded in different polymer matrixes allows a direct visualization of the local free volume. By monitoring the fluorescence lifetime of the dye molecule in time and at different locations in the matrix, different lifetimes were observed. Attributed to two distinct stable conformations of the dye molecule, the lifetime variations permitted characterization of the spatial distribution and temporal dynamics of free volume.

Perylene bisimide dyes as versatile building blocks for functional supramolecular architectures

Perylene bisimide dyes and their organization into supramolecular architectures through hydrogen-bonding, metal ion coordination and pi-pi-stacking is discussed; further self-assembly leading to nano- and meso-scopic structures and liquid-crystalline compounds is also addressed.

Single Photon Emission from a Dendrimer Containing Eight Perylene Diimide Chromophores

A novel dendrimer containing eight perylene diimide chromophores has been synthesized and studied by ensemble and single-molecule spectroscopic techniques. Photon anti-bunching (coincidence) measurements on single molecules embedded in zeonex polymer films show that the dendrimer behaves as a deterministic (triggered) single photon source with only one fluorescence photon being emitted following pulsed laser excitation, even when more than one chromophore is excited. This behaviour is due to efficient singlet–singlet annihilation being operative in this dendrimer. Preliminary results indicate that the triplet lifetime and yield for this molecule are similar to the values for a molecule containing a single perylene diimide chromophore.

Bias-Dependent Visualization of Electron Donor (D) and Electron Acceptor (A) Moieties in a Chiral DAD Triad Molecule

The 2D crystal lattice structure and bias-dependent contrast of a chiral electron donor-acceptor-donor triad system, composed of two oligo(p-phenylene vinylene) electron donors and a perylenediimide electron acceptor (OPV4-PDI-OPV4), have been studied by means of scanning tunneling microscopy (STM) at the liquid-graphite interface. OPV4-PDI-OPV4 is ordered in rows and forms a well-ordered 2D crystal lattice structure. The electrical properties of the donor and acceptor parts are distinguished by the contrast in bias-dependent STM imaging.

Intramolecular Directional Förster Resonance Energy Transfer at the Single-Molecule Level in a Dendritic System

We report on the directional Förster resonance energy transfer (FRET) process taking place in single molecules of a first (T1P4) and a second (T2P8) generation of a perylenemonoimide (P)-terrylenediimide (T)-based dendrimer in which the chromophores are separated by rigid polyphenylene arms. At low excitation powers, single-molecule detection and spectroscopy of T1P4 and T2P8 dendrimers point to a highly efficient directional FRET from P donors to the central T acceptor, optical excitation at 488 nm resulting in exclusively acceptor emission in the beginning of the detected fluorescence intensity. Donor emission is seen only upon the bleaching of the acceptor. High-resolution time-resolved single-molecule fluorescence data measured with a microchannel plate photomultiplier reveal, for T2P8, a broad range of FRET rates as a result of a broad range of distances and orientations experienced by the donor-acceptor dendrimers when immobilized in a polymer matrix. Single-molecule data from T2P8 on 488 nm excitation are indicative for the presence, after terrylenediimide bleaching, of a P-P excited dimer characterized by a broad emission spectrum peaking around 600 nm and by fluctuating fluorescence decay times. At high excitation powers, single T1P4 and T2P8 molecules display simultaneous emission from both donor and acceptor chromophores. The effect, called "exciton blockade", occurs due to the presence of multiple excitations in a single molecule.